CmoCh04G015260 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAATGGTTGCGATCTATAAATCCTCATCTTCAACGCCTCCAAAGGCGTTTCAAAATTCTACAGAGAGTTTCTGGCGGTTTTTCTCATCTGGTTCTCGGCGGCGATGGGTATTTTGTCGGCGTTTCTTTTCCCACCGCCTCCTTCCACGTTCGTAAACGTTATGACGGTGGTGAGCTCGACGGCGATGGGGATGGCAGGGATTTCAGAGATTAATGGTAAGCATTTGCAGTATTCCAAGTTCTGGAATGCGAATAGTTCTCCGAAAGCTCCATCGGAGGAACCTAAGCTTTCGTCCAAATATGGAATGCTCTTGGCTTATACGCCGGCATTTCTCGCCGGTGCGGCGTCGTTTTGGTTCTTTCCAAGCGACAATGAGAGGATTCTTGTGCTTAAAGCTGCTCTCACTCTCCATTTCTTCAAGAGGATCTTCGAGGTACTCTCAATTTCTCTACGCCTCTGATTGAGTTCTGAAATTTCAATCCGATTTTAAAATTAATTCTTCGATTCAGTTCGATTGTGGCTTTATTGAGAACCTGTTAATCTTATTCTTCGAAAATTTCTCGAGTCCTTTATACAACTGTATGAAGATTCGTGGCGAAAAGAAAATGGCGGAGAGATCTGGATCTCTTCTCCCTTCTTTGCATCTTATGGTTCCTCTGGAGATTTCGGAACTCGTCTTTATGTTTACGGGATTCGGAAGACTTTTAACCTATCTTGATTTCTTTTTTTTAATTTTTTGTCGTATGAACTTGAATATTAACCATCCACTTATAAATATCCGAGTTCATTAGTTTTCCTCTACTAATTTAATTGTCATTAAGAACTCGTGGAGTCTACTTTGTGTATAATAATAATTTTGGAATTATTATTATATGAAGTCATGTACAAGAAAGAACAAACTGCACGTTTCTGCTCAACAGTTTTCTAAGAAATTTGTTTCAATAATCACTAGATGATTTGCACTTATTGTACCTTTCATTCATGCGACAATTATTTTTGAAACAAATCGAGTATTCTTCTCAAATTATAGAAGCTATTCTTTTATTATTTCTTCAACCAATTGCATCTGAGGGTAACTAGAAATGATAACAAAAGTTTTGGAAGATCATATGAATCATTTAGAGAACAATGAAAAGTAATATAAACAAACATTTTTTCAGAAACAACAAAACACCTAATCTTATATTAAATATCATTGAATTCAAAAGCTCAAACGGATAGACTATATGAATTACTTACTATCATGAAATTCTTTGCAGGTTCTGTTCATTCACAAGTACAGCAGTAAAATGGTATTCGATACAGCAATCAAAATCTCGTTCAGCTACTGCTTGTCCACAGTGATCATGATATACACACAGCACCTATCACAAGGACTTCCAGAGCCGCCCATTGATCTGAAAAACATTGGGATTGCTTTGTTTCTGATAGGCATTATCGGGAACTTCTACCACCATTTTCTCTTGTCCAAAACCAGAAAACCGGGAGAAACAGGGTACAAAATCCCCAAGGGAGGCCTCTTCAGCCTTGTCATCTGCCCTCACTATCTGTTTGAAATCATTGAGTTTTTTGGATTTGCTTTCATCTCTCAGGAACTCTATCCCCTGTGCTTCAGCACCGGCACCGCCATTTATTTGGCTGGAAGGAGCTATGCCACAAGGAAATGGTACGTCTCCAAATTTGAAAACTTCCCCAGCCATGTCAAAGCCCTGCTCCCTTTTGTGTTTTAGAACCCTTCCTTTCTTCATTTCATAAAAGCTACTTATGTTTATGCTTTACACAATTAAGTTAGGCTCATACTACTATTGTATTAGTTCCCTTAGGTTGTGATTCTGTTTATCACTACAATAGTAGAAGGTAAAACAGTTGGATATTTGTTCTTTACCTGTTCTTAATAACGACGATTTATACTTGTGTGTTTTTATTTATTATAATTAAAATAGTTTTTATGTTATGAAATTGAATTGAATTAAATTAAATTAAAAATGTTATTGGCAAAAATTAGTCTAGAATTCCTAGGTTATATATTTGTTGTTTTAGAAAACCGCTCGTTCATGCAAGTGTTTCTATGGACTTCGTCGACCAAATTGGGTTGTTCGCATTTTTAGGCCGTAGTATAGAAGAGGAGTATTTAAAAAAATTCGATAATCTGAAAAGTTCTATTAATCCAATCCAAACCTATACTTAAAAATGTTTAAACAAAGAATTGAATAAATAATTCGAATGGGCATAAAAAAAGAAAAATTTATAGTTAGGTTCATTATTTTAAAAAACAAATTACACAATTGAAATAATTTAGTTGAGTTTAAAATTTTTTTCAGGATCAATCTAATCCAACCCATTAATACATGGAGGAGGAGGGAAAAGAGAAAAACCTTCTAATTTTTTTTAAAAAAAACTAATTTCTTAGAAAATAAATGTGTAAATTTTGTTTACTCTTTTTTTTATAAAAAAAAAATTAAAATTAGGAGGATAAAAATTGTTATTTTCTAGATTTATTTAATTTTTTATTTATTAAATAACTTTAAACTTATAAATCTTTTTCAAAACATTTTTATTCATAAAATATCTGGACAATAGGCTCTGATTTTTTTTTTTATAAATAAGGTTGCAAACTATCAAAAATAAAAATATTTTTAGAATATACAGCTAAAATAAATCATAAATAATACTAGAAAAAGAAAAAAACAATAAAAAAAACAAGAAATGTATTATATATATATATTACTTAATTAAGTAATGGCCACACACTAAGAAAGAAAAGGACATGGAGATTTTTTTTTAATAAATTGCAGAGCGATGAGGCAACCGTCGTTCACCATCAAATTTCCATCCTTCTCTGCAACTCACGATTTCAAGA AAAATGGTTGCGATCTATAAATCCTCATCTTCAACGCCTCCAAAGGCGTTTCAAAATTCTACAGAGAGTTTCTGGCGGTTTTTCTCATCTGGTTCTCGGCGGCGATGGGTATTTTGTCGGCGTTTCTTTTCCCACCGCCTCCTTCCACGTTCGTAAACGTTATGACGGTGGTGAGCTCGACGGCGATGGGGATGGCAGGGATTTCAGAGATTAATGGTAAGCATTTGCAGTATTCCAAGTTCTGGAATGCGAATAGTTCTCCGAAAGCTCCATCGGAGGAACCTAAGCTTTCGTCCAAATATGGAATGCTCTTGGCTTATACGCCGGCATTTCTCGCCGGTGCGGCGTCGTTTTGGTTCTTTCCAAGCGACAATGAGAGGATTCTTGTGCTTAAAGCTGCTCTCACTCTCCATTTCTTCAAGAGGATCTTCGAGGTTCTGTTCATTCACAAGTACAGCAGTAAAATGGTATTCGATACAGCAATCAAAATCTCGTTCAGCTACTGCTTGTCCACAGTGATCATGATATACACACAGCACCTATCACAAGGACTTCCAGAGCCGCCCATTGATCTGAAAAACATTGGGATTGCTTTGTTTCTGATAGGCATTATCGGGAACTTCTACCACCATTTTCTCTTGTCCAAAACCAGAAAACCGGGAGAAACAGGGTACAAAATCCCCAAGGGAGGCCTCTTCAGCCTTGTCATCTGCCCTCACTATCTGTTTGAAATCATTGAGTTTTTTGGATTTGCTTTCATCTCTCAGGAACTCTATCCCCTGTGCTTCAGCACCGGCACCGCCATTTATTTGGCTGGAAGGAGCTATGCCACAAGGAAATGA ATGGGTATTTTGTCGGCGTTTCTTTTCCCACCGCCTCCTTCCACGTTCGTAAACGTTATGACGGTGGTGAGCTCGACGGCGATGGGGATGGCAGGGATTTCAGAGATTAATGGTAAGCATTTGCAGTATTCCAAGTTCTGGAATGCGAATAGTTCTCCGAAAGCTCCATCGGAGGAACCTAAGCTTTCGTCCAAATATGGAATGCTCTTGGCTTATACGCCGGCATTTCTCGCCGGTGCGGCGTCGTTTTGGTTCTTTCCAAGCGACAATGAGAGGATTCTTGTGCTTAAAGCTGCTCTCACTCTCCATTTCTTCAAGAGGATCTTCGAGGTTCTGTTCATTCACAAGTACAGCAGTAAAATGGTATTCGATACAGCAATCAAAATCTCGTTCAGCTACTGCTTGTCCACAGTGATCATGATATACACACAGCACCTATCACAAGGACTTCCAGAGCCGCCCATTGATCTGAAAAACATTGGGATTGCTTTGTTTCTGATAGGCATTATCGGGAACTTCTACCACCATTTTCTCTTGTCCAAAACCAGAAAACCGGGAGAAACAGGGTACAAAATCCCCAAGGGAGGCCTCTTCAGCCTTGTCATCTGCCCTCACTATCTGTTTGAAATCATTGAGTTTTTTGGATTTGCTTTCATCTCTCAGGAACTCTATCCCCTGTGCTTCAGCACCGGCACCGCCATTTATTTGGCTGGAAGGAGCTATGCCACAAGGAAATGA
BLAST of CmoCh04G015260 vs. Swiss-Prot
Match: S5A1_RAT (3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Rattus norvegicus GN=Srd5a1 PE=1 SV=2) HSP 1 Score: 70.5 bits (171), Expect = 2.9e-11 Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1
BLAST of CmoCh04G015260 vs. Swiss-Prot
Match: S5A1_MACFA (3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Macaca fascicularis GN=SRD5A1 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.8e-11 Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
BLAST of CmoCh04G015260 vs. Swiss-Prot
Match: S5A1_HUMAN (3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Homo sapiens GN=SRD5A1 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.5e-11 Identity = 46/148 (31.08%), Postives = 73/148 (49.32%), Query Frame = 1
BLAST of CmoCh04G015260 vs. Swiss-Prot
Match: S5A1_MOUSE (3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Mus musculus GN=Srd5a1 PE=2 SV=2) HSP 1 Score: 68.9 bits (167), Expect = 8.5e-11 Identity = 62/223 (27.80%), Postives = 99/223 (44.39%), Query Frame = 1
BLAST of CmoCh04G015260 vs. Swiss-Prot
Match: S5A2_MACFA (3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Macaca fascicularis GN=SRD5A2 PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10 Identity = 45/151 (29.80%), Postives = 80/151 (52.98%), Query Frame = 1
BLAST of CmoCh04G015260 vs. TrEMBL
Match: A0A0A0KTC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612880 PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 3.3e-102 Identity = 189/245 (77.14%), Postives = 206/245 (84.08%), Query Frame = 1
BLAST of CmoCh04G015260 vs. TrEMBL
Match: A0A0A0KWK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612900 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 2.6e-91 Identity = 173/246 (70.33%), Postives = 200/246 (81.30%), Query Frame = 1
BLAST of CmoCh04G015260 vs. TrEMBL
Match: A0A0A0KRA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612890 PE=4 SV=1) HSP 1 Score: 330.1 bits (845), Expect = 2.3e-87 Identity = 167/247 (67.61%), Postives = 194/247 (78.54%), Query Frame = 1
BLAST of CmoCh04G015260 vs. TrEMBL
Match: I1JDE1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G081200 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 3.1e-84 Identity = 159/245 (64.90%), Postives = 188/245 (76.73%), Query Frame = 1
BLAST of CmoCh04G015260 vs. TrEMBL
Match: A0A0S3TAT5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G143800 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 9.0e-84 Identity = 158/245 (64.49%), Postives = 185/245 (75.51%), Query Frame = 1
BLAST of CmoCh04G015260 vs. TAIR10
Match: AT5G16010.1 (AT5G16010.1 3-oxo-5-alpha-steroid 4-dehydrogenase family protein) HSP 1 Score: 275.0 bits (702), Expect = 4.4e-74 Identity = 138/246 (56.10%), Postives = 181/246 (73.58%), Query Frame = 1
BLAST of CmoCh04G015260 vs. NCBI nr
Match: gi|778706250|ref|XP_004135052.2| (PREDICTED: 3-oxo-5-alpha-steroid 4-dehydrogenase 2-like [Cucumis sativus]) HSP 1 Score: 418.3 bits (1074), Expect = 9.2e-114 Identity = 203/245 (82.86%), Postives = 223/245 (91.02%), Query Frame = 1
BLAST of CmoCh04G015260 vs. NCBI nr
Match: gi|659091769|ref|XP_008446722.1| (PREDICTED: 3-oxo-5-alpha-steroid 4-dehydrogenase 2-like [Cucumis melo]) HSP 1 Score: 417.2 bits (1071), Expect = 2.0e-113 Identity = 207/245 (84.49%), Postives = 220/245 (89.80%), Query Frame = 1
BLAST of CmoCh04G015260 vs. NCBI nr
Match: gi|700196982|gb|KGN52159.1| (hypothetical protein Csa_5G612880 [Cucumis sativus]) HSP 1 Score: 379.4 bits (973), Expect = 4.7e-102 Identity = 189/245 (77.14%), Postives = 206/245 (84.08%), Query Frame = 1
BLAST of CmoCh04G015260 vs. NCBI nr
Match: gi|659091773|ref|XP_008446724.1| (PREDICTED: 3-oxo-5-alpha-steroid 4-dehydrogenase 1-like [Cucumis melo]) HSP 1 Score: 344.0 bits (881), Expect = 2.2e-91 Identity = 172/246 (69.92%), Postives = 195/246 (79.27%), Query Frame = 1
BLAST of CmoCh04G015260 vs. NCBI nr
Match: gi|449434532|ref|XP_004135050.1| (PREDICTED: 3-oxo-5-alpha-steroid 4-dehydrogenase 2-like [Cucumis sativus]) HSP 1 Score: 343.2 bits (879), Expect = 3.8e-91 Identity = 173/246 (70.33%), Postives = 200/246 (81.30%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|