CmoCh04G013800 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box family protein
Location	Cmo_Chr04 : 7031949 .. 7032964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTCATAAGTGAAAAGCTTGAAGATCGTAGCACGATGGTCAGTTCCCTGAAACGAAAATCCCAGGCTCTTGACTCTCAAATTTCAATGTACGTTAAATTAATTTTTGCATGCATACTTTTTTTATTAATAAAAATTATTTGATTATTTTTTGTCTAGAGTTTTTAATAATAAATTTATTACAACGGTTGTGACTTACTTTTGACGATTTGGCGGCGGCTCGAGTTCTTCTTTAAGTTTGTTTCTCTCTAATTTATGATGTGCAGGACAACCAAAATGGCGCGTTTTATGCTTCTCCATTGGCCATAGAATCACTCCCAAATGATTTATTGATTGAAGTTTTGGCAAAAGTTGCCGCTTTTTCATTCACGCATTTAGTCCAAGCCAAATTAGCCACCAAGGATTTTCTCGAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTGGAAACTTCCAGAAGCTTCTATGGAACAACAGCATAGAGTTTTGGTCGTTCATGGAAAAATGCAACAACAACGAGAACCCAGAGACTCTATACCGAAAGGGGATGCTAGAATTCTTCACCCATTGTAGAGAAGCTTTTGGAATGACATATTTAAAACTTTCTGCCCAAAAAGGCTACCCGAAAGCTTGTTATGTATACGGCATCATTTTGTAGGCAACGAGTTTGGAGGATGAGGGAGTGAAGTTCTTGAAGATTTGTGAGGCGAAATTAGGGCTTAAATTGGCTGAATGTCATTGGAGAGTTAAGGAATTTGTTCGTTATCTTTGGGTTAAGAACAAGATTTCTTTGTCGGAAAAAGATTTCGATGACCAAAGAGACTGTGAGAGTGTAGTTAAGAATAGTTGTAAGAAGAACGTGAAAAGAATTAGATGGGATGAGAACGATGGGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGGATGAGGAAGTTTTGAGATTTTGTAATATGCTTAGAACTGGAAATTATGATATTAGGTTGGGGCACTTGTAA

mRNA sequence

ATGCCGTTCATAAGTGAAAAGCTTGAAGATCGTAGCACGATGGACAACCAAAATGGCGCGTTTTATGCTTCTCCATTGGCCATAGAATCACTCCCAAATGATTTATTGATTGAAGTTTTGGCAAAAGTTGCCGCTTTTTCATTCACGCATTTAGTCCAAGCCAAATTAGCCACCAAGGATTTTCTCGAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTGGAAACTTCCAGAAGCTTCTATGGAACAACAGCATAGAGTTTTGGTCGTTCATGGAAAAATGCAACAACAACGAGAACCCAGAGACTCTATACCGAAAGGGGATGCTAGAATTCTTCACCCATTGTAGAGAAGCTTTTGGAATGACATATTTAAAACTTTCTGCCCAAAAAGGCTACCCGAAAGCTTGTTATGCAACGAGTTTGGAGGATGAGGGAGTGAAGTTCTTGAAGATTTGTGAGGCGAAATTAGGGCTTAAATTGGCTGAATGTCATTGGAGAGTTAAGGAATTTGTTCGTTATCTTTGGGTTAAGAACAAGATTTCTTTGTCGGAAAAAGATTTCGATGACCAAAGAGACTGTGAGAGTGTAGTTAAGAATAGTTGTAAGAAGAACGTGAAAAGAATTAGATGGGATGAGAACGATGGGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGGATGAGGAAGTTTTGAGATTTTGTAATATGCTTAGAACTGGAAATTATGATATTAGGTTGGGGCACTTGTAA

Coding sequence (CDS)

ATGCCGTTCATAAGTGAAAAGCTTGAAGATCGTAGCACGATGGACAACCAAAATGGCGCGTTTTATGCTTCTCCATTGGCCATAGAATCACTCCCAAATGATTTATTGATTGAAGTTTTGGCAAAAGTTGCCGCTTTTTCATTCACGCATTTAGTCCAAGCCAAATTAGCCACCAAGGATTTTCTCGAAGCATCAAGTCATGGCTACATATTCCAGCACGCGTCCCTTGGAAACTTCCAGAAGCTTCTATGGAACAACAGCATAGAGTTTTGGTCGTTCATGGAAAAATGCAACAACAACGAGAACCCAGAGACTCTATACCGAAAGGGGATGCTAGAATTCTTCACCCATTGTAGAGAAGCTTTTGGAATGACATATTTAAAACTTTCTGCCCAAAAAGGCTACCCGAAAGCTTGTTATGCAACGAGTTTGGAGGATGAGGGAGTGAAGTTCTTGAAGATTTGTGAGGCGAAATTAGGGCTTAAATTGGCTGAATGTCATTGGAGAGTTAAGGAATTTGTTCGTTATCTTTGGGTTAAGAACAAGATTTCTTTGTCGGAAAAAGATTTCGATGACCAAAGAGACTGTGAGAGTGTAGTTAAGAATAGTTGTAAGAAGAACGTGAAAAGAATTAGATGGGATGAGAACGATGGGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGGATGAGGAAGTTTTGAGATTTTGTAATATGCTTAGAACTGGAAATTATGATATTAGGTTGGGGCACTTGTAA

Homology

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BLAST of CmoCh04G013800 vs. Swiss-Prot
Match: FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-11
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 26  LAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWN 85
           L ++SLP DLL+E+ +   A S + +   +L +K F       Y+F   SL   + L W+
Sbjct: 22  LCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWH 81

Query: 86  NSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKACY 141
            +     F+E+C  + NPE L++KG + +F    +  G+ YL  +A+KG  +A Y
Sbjct: 82  ENSA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKY 134

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BLAST of CmoCh04G013800 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.3e-80
Identity = 153/244 (62.70%), Postives = 180/244 (73.77%), Query Frame = 1


Query: 12  STMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIF 71
           S +  +N     SP  I+SLPNDLL EVLAKVA  S+  L+QAKLATK FLEAS+  YIF
Sbjct: 18  SRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIF 77

Query: 72  QHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSA 131
           QH SLGNF+ LLWNNS +FWSFME CNN+ENPE+LYRKGMLEFFTHC+EA GM YLK SA
Sbjct: 78  QHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSA 137

Query: 132 QKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKIS 191
           QKGY  AC       YA++L+DEG++FLK  E KLG K+ EC  RVKEFV Y+W+KNKIS
Sbjct: 138 QKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKIS 197

Query: 192 LSEKDFDDQRDCESVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLR 249
           LSE D    R C+  +  +C+ N K   WD  D DDYYG++TCE CKW+ EVLRFC MLR
Sbjct: 198 LSEGDSSYGRKCDKNI--NCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLR 257

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BLAST of CmoCh04G013800 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 85/236 (36.02%), Postives = 124/236 (52.54%), Query Frame = 1


Query: 28  IESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKL-LWNN 87
           IESL +DLLIEVL +VA+ SFT L  AKL+ ++FLEAS   ++ ++ S+  F  +  W  
Sbjct: 15  IESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEKFPTIPWWQV 74

Query: 88  SIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKACY------ 147
             E  SF++ C  + NPE LYR+GM+EFF+  +      YLK + + G+ +A Y      
Sbjct: 75  KDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGIIL 134

Query: 148 ----ATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDC 207
                 S E++G+K L     K   KL EC  R + F   +W++N I   +       + 
Sbjct: 135 LCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQ-------EL 194

Query: 208 ESVVKNSC-KKNVKRI------RWDENDGD-DYYGEHTCEACKWDEEVLRFCNMLR 245
            S   N+C ++N   I       W E+D D D    + CEAC WD+EV  FC + R
Sbjct: 195 TSYHANTCGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

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BLAST of CmoCh04G013800 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 77/232 (33.19%), Postives = 119/232 (51.29%), Query Frame = 1


Query: 32  PNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFW 91
           P DLL EVLA+VA+ S + L  AKL+ K+FLEA+S  YIF+H ++     + W  S    
Sbjct: 18  PKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPVIPWRISHGAS 77

Query: 92  SFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKA---------CYAT 151
           SF+ +C  N NPE L+R+GM+EFF+  +   G  +LK +A+KG+ +A         C+  
Sbjct: 78  SFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVILVCHGG 137

Query: 152 SLEDEGVKFLKICE--AKLGLKLAECHWRVKEFVRYLWVKNKIS--LSEKDFDDQRDCES 211
             + EG++ L   +        + EC  ++KE ++ +W+  + +    E+     R C  
Sbjct: 138 QFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRREAGIGPEEPKSHGRTC-- 197

Query: 212 VVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNYDI 251
               +C K  KR   DE +        TC+ C WD E   FC +LR   + I
Sbjct: 198 ----NCSKFNKRGWIDEEE------YTTCDYCVWDHEATLFCKILRARGFGI 237

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BLAST of CmoCh04G013800 vs. TrEMBL
Match: I1KMZ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 4.4e-25
Identity = 81/229 (35.37%), Postives = 116/229 (50.66%), Query Frame = 1


Query: 24  SPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQ--K 83
           S   I+SLP +L +E+ AKVA  S       KL  K+FL A+   Y+++HAS+ NF    
Sbjct: 18  SVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALVP 77

Query: 84  LLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKACYA 143
           L W    +  SF+++C  + N E LYR+GML++FT  R   G+  LK +A +G+  A Y 
Sbjct: 78  LPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKYV 137

Query: 144 TSL-----EDEGVK---FLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQ 203
             +     EDEG +   F   C  K    +  C  RVK FVR +W+KNK +  +  F   
Sbjct: 138 YCMLLMCGEDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNKPN-GKSSFCGS 197

Query: 204 RDCESVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNM 243
             C+S  +    K     RW   +  D  G  +C+ C  D E+  FCNM
Sbjct: 198 GTCDSERQKQLSK-----RWSSFEDKD--GGISCQRCGADHELGFFCNM 238

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BLAST of CmoCh04G013800 vs. TrEMBL
Match: A0A0B2P0Z6_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.4e-25
Identity = 81/229 (35.37%), Postives = 116/229 (50.66%), Query Frame = 1


Query: 24  SPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQ--K 83
           S   I+SLP +L +E+ AKVA  S       KL  K+FL A+   Y+++HAS+ NF    
Sbjct: 18  SVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALVP 77

Query: 84  LLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKACYA 143
           L W    +  SF+++C  + N E LYR+GML++FT  R   G+  LK +A +G+  A Y 
Sbjct: 78  LPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKYV 137

Query: 144 TSL-----EDEGVK---FLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQ 203
             +     EDEG +   F   C  K    +  C  RVK FVR +W+KNK +  +  F   
Sbjct: 138 YCMLLMCGEDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNKPN-GKSSFCGS 197

Query: 204 RDCESVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNM 243
             C+S  +    K     RW   +  D  G  +C+ C  D E+  FCNM
Sbjct: 198 GTCDSERQKQLSK-----RWSSFEDKD--GGISCQRCGADHELGFFCNM 238

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BLAST of CmoCh04G013800 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-13
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 26  LAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWN 85
           L ++SLP DLL+E+ +   A S + +   +L +K F       Y+F   SL   + L W+
Sbjct: 22  LCLDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWH 81

Query: 86  NSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKACY 141
            +     F+E+C  + NPE L++KG + +F    +  G+ YL  +A+KG  +A Y
Sbjct: 82  ENSA--KFIERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKY 134

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BLAST of CmoCh04G013800 vs. TAIR10
Match: AT1G74875.1 (AT1G74875.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 58.2 bits (139), Expect = 8.8e-09
Identity = 58/231 (25.11%), Postives = 96/231 (41.56%), Query Frame = 1


Query: 33  NDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFWS 92
           N   I ++  V + S +     +L +K F   S+  YI Q  SL     L W N  +F +
Sbjct: 17  NMFQIHLVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHN 76

Query: 93  FMEKCNNNENPETLYRKGMLEFF---THCREA-FGMTYLKLSAQKGYPKACYATSLEDEG 152
           F ++C  + N E +YRKG++++F   +H R+   G+ ++  +A  G  +A Y   L    
Sbjct: 77  FFKRCRKSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGL---- 136

Query: 153 VKFLKICEAKLGLKLAECHWRVKEFVRY-LWVKNKISLSEKDFDDQRDC----------- 212
              + IC   LG K  +  +++   +R  L + N I   EK     R+            
Sbjct: 137 ---ILIC---LGGKTKQNGFKILSSLRKPLMLSNTIKEMEKHRTHIRNMWWWGEPMMRHL 196

Query: 213 -ESVVKNSCKKNVKR-------IRWDENDGDDYYGEHTCEACKWDEEVLRF 240
            +S V+ +C  + +         R    + DD      CE C    EV  F
Sbjct: 197 QKSYVRENCNCDGRTEIFPNYCFRHRFGEDDDMLTSSACEICLCHHEVKLF 237

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BLAST of CmoCh04G013800 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 4.3e-82
Identity = 160/255 (62.75%), Postives = 185/255 (72.55%), Query Frame = 1


Query: 1   MPFISEKLEDRSTMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKD 60
           +PF    L  R+T  N+ G    SP  I+SLPNDLL EVLAKVAA S+  LVQAKLATK 
Sbjct: 10  LPF--HTLISRTTQKNRTGVL--SPTVIKSLPNDLLTEVLAKVAASSYVDLVQAKLATKQ 69

Query: 61  FLEASSHGYIFQHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCRE 120
           FLEAS   YIFQH SLGNF+  LWNNS EFWSF+E CNNNENPE+LYRKGMLEFFTHC+E
Sbjct: 70  FLEASKDRYIFQHVSLGNFENHLWNNSPEFWSFIETCNNNENPESLYRKGMLEFFTHCKE 129

Query: 121 AFGMTYLKLSAQKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEF 180
           A G+ YLKLSAQKGY  AC       YA+  +DEG +FLK  EAKL  K+AEC WRVK F
Sbjct: 130 ASGLAYLKLSAQKGYVDACYVCSVILYASKAKDEGFEFLKNHEAKLRNKMAECRWRVKRF 189

Query: 181 VRYLWVKNKISLSEKDFDDQRDCESVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWD 240
           V YLW+KN+IS S +D +D R C+  +  +C+ N +R  WD  D DDYYGE+TCE CKW+
Sbjct: 190 VSYLWIKNRISSSGEDPND-RKCDKNI--NCRVNERRNSWDWKDEDDYYGEYTCEKCKWN 249

Query: 241 EEVLRFCNMLRTGNY 249
            EV RFC MLRTG Y
Sbjct: 250 NEVFRFCKMLRTGRY 257

[Close]

BLAST of CmoCh04G013800 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.8e-80
Identity = 153/244 (62.70%), Postives = 180/244 (73.77%), Query Frame = 1


Query: 12  STMDNQNGAFYASPLAIESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIF 71
           S +  +N     SP  I+SLPNDLL EVLAKVA  S+  L+QAKLATK FLEAS+  YIF
Sbjct: 18  SRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIF 77

Query: 72  QHASLGNFQKLLWNNSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSA 131
           QH SLGNF+ LLWNNS +FWSFME CNN+ENPE+LYRKGMLEFFTHC+EA GM YLK SA
Sbjct: 78  QHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSA 137

Query: 132 QKGYPKAC-------YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKIS 191
           QKGY  AC       YA++L+DEG++FLK  E KLG K+ EC  RVKEFV Y+W+KNKIS
Sbjct: 138 QKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKIS 197

Query: 192 LSEKDFDDQRDCESVVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLR 249
           LSE D    R C+  +  +C+ N K   WD  D DDYYG++TCE CKW+ EVLRFC MLR
Sbjct: 198 LSEGDSSYGRKCDKNI--NCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLR 257

[Close]

BLAST of CmoCh04G013800 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 4.5e-71
Identity = 144/230 (62.61%), Postives = 170/230 (73.91%), Query Frame = 1


Query: 28  IESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGN--FQKLLWN 87
           I SLPNDLLIEVLAKVAA S+  LVQAKLATK FL AS+ GYIFQH SL N  F+ LLWN
Sbjct: 33  IVSLPNDLLIEVLAKVAASSYIDLVQAKLATKLFLHASNDGYIFQHVSLENKSFRNLLWN 92

Query: 88  NSIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKAC------ 147
           N+ +  SFME  NNNENPE+LYRKG +EFF+H +EA G++YLK SAQKGY  AC      
Sbjct: 93  NTPQSRSFMETLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVV 152

Query: 148 -YATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDCES 207
            YA +L++EGV++LK+CEAKLG K+AEC  RVKEFV Y W+KN+IS+S++       C +
Sbjct: 153 MYAANLKEEGVEYLKMCEAKLGNKMAECRRRVKEFVWYFWIKNRISMSKE------ICSN 212

Query: 208 VVKNSCKKNVKRIRWDENDGDDYYGEHTCEACKWDEEVLRFCNMLRTGNY 249
           V   +CK N +   WD  D DDYYGEHTCE CKW  EVLRFCNMLR G Y
Sbjct: 213 V---NCKVNERSNGWDWKDEDDYYGEHTCEQCKWSNEVLRFCNMLRRGGY 253

[Close]

BLAST of CmoCh04G013800 vs. NCBI nr
Match: gi|802724919|ref|XP_012085893.1| (PREDICTED: putative F-box protein At1g67623 [Jatropha curcas])

HSP 1 Score: 130.2 bits (326), Expect = 5.2e-27
Identity = 79/248 (31.85%), Postives = 129/248 (52.02%), Query Frame = 1


Query: 32  PNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKLLWNNSIEFW 91
           P +LL E+L +VA+ SFT L  AK + ++FL+ ++  Y F+H SL     + W  +    
Sbjct: 26  PKELLTEILFRVASSSFTDLCNAKASCEEFLQVATEDYFFEHVSLNPIPIISWRINHAVS 85

Query: 92  SFMEKCNNNENPETLYRKGMLEFFTHCRE----------AFGMTYLKLSAQKGYPKA--- 151
           SF+ +C  + NPE L+R+GM+++F+  ++          A G+  LK +A+KG+ +A   
Sbjct: 86  SFLFECKRSGNPEALFRRGMVDYFSKPKQRESGLDFLEKASGLELLKEAAKKGHMEANYV 145

Query: 152 ------CYATSLEDEGVKFL-KICEAKLGLKLAECHWRVKEFVRYLWVKNKI-SLSEKDF 211
                 CY   L  EG+K L K   + L L + +C  +V++ V+ +WV + I     ++ 
Sbjct: 146 CGIILVCYGGELRKEGLKLLSKFERSNLSLVITDCRKKVRDLVKNIWVDDNIFGFGPEEE 205

Query: 212 DDQR------DCESVVKNSCKKNVKRIRWDENDGDDYYGEHT--CEACKWDEEVLRFCNM 251
           ++ R       C S  K  C   V   RW  +   DY+ + +  C++C W  E  RF NM
Sbjct: 206 EECRISIKSCSCNSKKKAVCSFTVAGSRWTMD--SDYFEDDSSLCDSCLWRREATRFLNM 265

[Close]

BLAST of CmoCh04G013800 vs. NCBI nr
Match: gi|147773103|emb|CAN71689.1| (hypothetical protein VITISV_039291 [Vitis vinifera])

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 85/236 (36.02%), Postives = 124/236 (52.54%), Query Frame = 1


Query: 28  IESLPNDLLIEVLAKVAAFSFTHLVQAKLATKDFLEASSHGYIFQHASLGNFQKL-LWNN 87
           IESL +DLLIEVL +VA+ SFT L  AKL+ ++FLEAS   ++ ++ S+  F  +  W  
Sbjct: 15  IESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEKFPTIPWWQV 74

Query: 88  SIEFWSFMEKCNNNENPETLYRKGMLEFFTHCREAFGMTYLKLSAQKGYPKACY------ 147
             E  SF++ C  + NPE LYR+GM+EFF+  +      YLK + + G+ +A Y      
Sbjct: 75  KDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGIIL 134

Query: 148 ----ATSLEDEGVKFLKICEAKLGLKLAECHWRVKEFVRYLWVKNKISLSEKDFDDQRDC 207
                 S E++G+K L     K   KL EC  R + F   +W++N I   +       + 
Sbjct: 135 LCKGGDSNEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQ-------EL 194

Query: 208 ESVVKNSC-KKNVKRI------RWDENDGD-DYYGEHTCEACKWDEEVLRFCNMLR 245
            S   N+C ++N   I       W E+D D D    + CEAC WD+EV  FC + R
Sbjct: 195 TSYHANTCGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

The following BLAST results are available for this feature:

BLAST of CmoCh04G013800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB79_ARATH	1.4e-11	32.17	Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1	[more]

BLAST of CmoCh04G013800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS96_CUCSA	1.3e-80	62.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1	[more]
A5AV49_VITVI	1.4e-26	36.02	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1	[more]
B9I6Z5_POPTR	2.0e-25	33.19	F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1	[more]
I1KMZ2_SOYBN	4.4e-25	35.37	Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2	[more]
A0A0B2P0Z6_GLYSO	4.4e-25	35.37	Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1	[more]

BLAST of CmoCh04G013800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67623.1	7.7e-13	32.17	F-box family protein	[more]
AT1G74875.1	8.8e-09	25.11	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh04G013800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107472\|ref\|XP_008453691.1\|	4.3e-82	62.75	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
gi\|449439561\|ref\|XP_004137554.1\|	1.8e-80	62.70	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|449435498\|ref\|XP_004135532.1\|	4.5e-71	62.61	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|802724919\|ref\|XP_012085893.1\|	5.2e-27	31.85	PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]	[more]
gi\|147773103\|emb\|CAN71689.1\|	2.0e-26	36.02	hypothetical protein VITISV_039291 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013800.1	CmoCh04G013800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 11..250 score: 6.3
None	No IPR available	PANTHER	PTHR33784:SF4	SUBFAMILY NOT NAMED	coord: 11..250 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013800	Cucumber (Chinese Long) v3	cmocucB0849
CmoCh04G013800	Watermelon (97103) v2	cmowmbB698
CmoCh04G013800	Wax gourd	cmowgoB0891
CmoCh04G013800	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G013800	Cucurbita moschata (Rifu)	cmocmoB343
CmoCh04G013800	Cucumber (Gy14) v1	cgycmoB0124
CmoCh04G013800	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G013800	Cucurbita maxima (Rimu)	cmacmoB425
CmoCh04G013800	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013800	Wild cucumber (PI 183967)	cmocpiB725
CmoCh04G013800	Cucumber (Chinese Long) v2	cmocuB717
CmoCh04G013800	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G013800	Watermelon (Charleston Gray)	cmowcgB624
CmoCh04G013800	Watermelon (97103) v1	cmowmB724
CmoCh04G013800	Cucurbita pepo (Zucchini)	cmocpeB648
CmoCh04G013800	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G013800	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013800	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G013800	Cucumber (Gy14) v2	cgybcmoB628
CmoCh04G013800	Melon (DHL92) v3.6.1	cmomedB734
CmoCh04G013800	Silver-seed gourd	carcmoB0986
CmoCh04G013800	Silver-seed gourd	carcmoB0987
CmoCh04G013800	Silver-seed gourd	carcmoB1138