CmoCh03G012160 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGGAGTGAAGGAAAAGAGTGGGAATTCGAGCAGTTTGAGACGAATTGGGGAATACCCATGTGATCCTTGTTCATCTTTTGGCCAAAAGTGCAGCAATTTGGTGAAGAAACAACGCACTAAATTCTACATCCTCCGCCGCTGTGTGGCTTTGCTTCTCTGCTCGCATGAGCGTGGCGACCCTTGATATCACACACACAAGCCTCCGCCACCGCCACTGCCACCGCCTCTGCTTTTGTTGCGCCAACGCCGGTGTGCTTCTTTTCTTTGAACTTCATTTTGTTTATAGGAGATCTTAATAACATCTCTCTGTTCATGACTCTTTCTTGAGTTCGAATTGAAGCCATTTTTGTTGTTCTAACCGAGTTATAGAGAGATTTCATGATTAGAACGATGCATTTAGGTGAGAAATTCAAACTTTTGATCGCTTAATTGAGAGCATATGTCTAAACGAATTGAGTTTGGCTCGTATTAACACCAAATTTTACAAACAATATACTTCTATTTTTTTTTTGGTTAAGAAAGCAAGGTACAATTTTAATATAGATATAGCTTACTATGTTAATAAATTTTAAATGGGCTAATTAAAGAGATAAGGTCAGATCAAGTTCAAATATCGATCCTGTCAAATTTAAGATATAATTTATCATATGGAGTATGATATATCGAAATTGTTTAATTAACTCTTTAAAACTTACTTGAGATATAATGTTCTAAAAATGAATAATCTATATTTTTTTTTTTAAGAATACAACGTTCTACAAAGATTACATGTTTTTTTAATAAACCCATAAATCAAATTCATTAAATTCAACAAAGTCGTAAGTATCCACATGATTTGTCAATTCAATCCTAAAGTGAACATGAGACAAGACACAAGCACCCAATGTTTGTATTATTATTTGTGCGTTTTCTTAATAATATAAAATTTGATCGTATCTTTTTATTTGTATATCGATGGTATAAATTTTAACGAAAAAGTAATCATTTTTAATATATATTTTTTTTTATAACAAATGATATATCACTGGACCTTGAACATTTAACGTAATAGAAATAAGTAAGTACCTACATTTTTTATTAAATTTTTGCAAGAAATTAAAATATTTCTTGAAAATCAAGATTTAGTCGTTGTTTCCAAGTGGAGCCAACATCAAACTGTGGGGAAGAACAAGACCAATGGATTACGCTATTTAGGGCCTAAAGATAAAAGCTAAGATCTCAACTAGATTCGTTTCCATCGGCTCTTTTGTTTTATAACATATGAGATATGGAATTGAATATGGAATGTGAAAGAAAGAAATAAGTATACATCAATTACTGCTAATGAGCTAGGCTAGAGAGAGAAAGAGGGAGAGAGAGAGAAAAGGGAGGCAAAGGAGTGGGTACGATCAGCTGCAGCTTCTTCTGATTTTCAGAGACCCCTCGTGCGGCCCTCCCTCTCCTCTTTTTTCTTTCCTGCTTTGCTTTTCAATCATTTCAAATTAGGGTTTCACTTCAAAATCCTACCTTTCCTGCTGGTTTCCATGGCTTCCGAGTTAGGGTTTTGTATTCCTACTCTTCTCATCCCCTTAAATTACAAATTTAATTCTTCCTTTTATAAACTTTATTAGAGAATAAATAATCAAAAAATAGTTATCTCAAATTAAAAATAACGTAGGTATATAATTGTATCCAATTTTTTATAAAACCAATAACAAATTTGTGTTGGTTCTGTTCAACTTAGTCAAAATTTATAAAGCTTGAATTCAATCTAAATAAGTATATAATCCAACTAGATTGGGTTAGGTTGATCAGTTTTTCAGATCATCTGATCTTTTGAACATTCCTACTCGAAAGGTTAACTACATATGGGTCTAATTAGCACTTAAACAAAATCAATAATCAATAATTTAATGTGTAATTTATTTGTATATATTAATATCTATTATTATTATGAATAGGATTGGATGTCCCAACAAAAAAAAACATAAAATTTACCAATTTTAAGGAACATGAATCTCAAAGTTTCTCTGTTCTGTTGACACACAAATTATTAAGTTGACTCGTTCCCTAACACACTAACAATTTCATATGAATCTCAAACATCCCACATTTAATCTTTAACTTTTCGATCTTGTTTTTCAATTATTTTCATCATGGTCCCTTGAGTTTTAGTCATTTTGAATCCTTTCCCTCCTTTTGTTTTCTTTTTTCTTTTTGGTCCCTACCCTTGTCACTCTCAATCTACTTTACTCCCCTCCACTTAGACATCGGAGAGACATGTCTTTGTCCTATCAATGTTCTTGTTTGTAATTCTTTCTTCAAGGATGTTTTTTTTTTCAATATTGTTCTCCACTCATATCTTGAAAATTATACTTGGTGAGATGGAGTAAAATTTGTGTGGTGCAATGGAGTATAATTTTGTGTGGTGAAGGCTCCCGTAATCCCATCTAATACGTGGCGGGTAGAGACATGATCCTATTTGATATGTAGTTGGTAGAAACATGAGAAAAAACTCTGCAAAAACCGTAATGCATCTTTTGATTCTACTCGACTTTCTCTTTGAGCTACAGCTCCAGCAAAACGGTCAACTAAGTGTGAACAATAAGAATGGACTAAAGCATCTCGGACTTTCTTAGAAAGAAAAGTTGCCACGGATAAGGCTTTAAAAGTCCTGCACTTAGTTAAGTAGTAGAGGCCAAACAGCAGTCCTATGGTGTTCTGAAGTTATCCATTTTTAAAGCAGTAACAGGAAATAACCAACTGATATGTCTACATTATAGGCAAGTATCACTACCCAAGGAGGCGCCCTGAAGCCATCTTTGGAACCGAACACCCCTCCAACTGAAGGCTCCTTCTTCCCCCACAGATCTTTCTATGAGAAACGGACACAAATTTGCAGTGTTAGAAGAACTGTTCTAA ATGGAAGGAGTGAAGGAAAAGAGTGGGAATTCGAGCAGTTTGAGACGAATTGGGGAATACCCATGTGATCCTTGTTCATCTTTTGGCCAAAAGTGCAGCAATTTGGTGAAGAAACAACGCACTAAATTCTACATCCTCCGCCGCTGTGTGGCTTTGCTTCTCTGCTCGCATGAGCTAGAGGCCAAACAGCAGTCCTATGGTGTTCTGAAGTTATCCATTTTTAAAGCAGTAACAGGAAATAACCAACTGATATGTCTACATTATAGGCAAGCTCCTTCTTCCCCCACAGATCTTTCTATGAGAAACGGACACAAATTTGCAGTGTTAGAAGAACTGTTCTAA ATGGAAGGAGTGAAGGAAAAGAGTGGGAATTCGAGCAGTTTGAGACGAATTGGGGAATACCCATGTGATCCTTGTTCATCTTTTGGCCAAAAGTGCAGCAATTTGGTGAAGAAACAACGCACTAAATTCTACATCCTCCGCCGCTGTGTGGCTTTGCTTCTCTGCTCGCATGAGCTAGAGGCCAAACAGCAGTCCTATGGTGTTCTGAAGTTATCCATTTTTAAAGCAGTAACAGGAAATAACCAACTGATATGTCTACATTATAGGCAAGCTCCTTCTTCCCCCACAGATCTTTCTATGAGAAACGGACACAAATTTGCAGTGTTAGAAGAACTGTTCTAA
BLAST of CmoCh03G012160 vs. TrEMBL
Match: A0A151TV07_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_010133 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11 Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1
BLAST of CmoCh03G012160 vs. TrEMBL
Match: K7LZR1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G143700 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11 Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
BLAST of CmoCh03G012160 vs. TrEMBL
Match: G7L3V3_MEDTR (DVL family protein OS=Medicago truncatula GN=MTR_7g101850 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 8.0e-11 Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1
BLAST of CmoCh03G012160 vs. TrEMBL
Match: K7LHN6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G057200 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10 Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1
BLAST of CmoCh03G012160 vs. TrEMBL
Match: A0A151S2V1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029099 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1
BLAST of CmoCh03G012160 vs. TAIR10
Match: AT2G36985.1 (AT2G36985.1 DVL family protein) HSP 1 Score: 67.8 bits (164), Expect = 4.9e-12 Identity = 26/37 (70.27%), Postives = 34/37 (91.89%), Query Frame = 1
BLAST of CmoCh03G012160 vs. TAIR10
Match: AT3G53232.1 (AT3G53232.1 ROTUNDIFOLIA like 1) HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06 Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 1
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|778717178|ref|XP_011657662.1| (PREDICTED: uncharacterized protein LOC105435882 [Cucumis sativus]) HSP 1 Score: 81.6 bits (200), Expect = 9.4e-13 Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 1
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|1012359709|gb|KYP70893.1| (hypothetical protein KK1_010133 [Cajanus cajan]) HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11 Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|947071026|gb|KRH19917.1| (hypothetical protein GLYMA_13G143700 [Glycine max]) HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11 Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|659125016|ref|XP_008462465.1| (PREDICTED: uncharacterized protein LOC103500815 [Cucumis melo]) HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11 Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1
BLAST of CmoCh03G012160 vs. NCBI nr
Match: gi|1012188654|ref|XP_015970108.1| (PREDICTED: uncharacterized protein LOC107493533 [Arachis duranensis]) HSP 1 Score: 75.5 bits (184), Expect = 6.7e-11 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |