CmoCh02G004470 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G004470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plastocyanin-like domain protein
Location	Cmo_Chr02 : 2341520 .. 2342014 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCGTCTTCCGCTGCCATCCTCGTCCTCGTTGTCTCTTGCATGTCAGTTGTCTGTTCGGCCCGAGGTCCGAAAAAGATTGTCGTGGGCGGTCATCAAACGTGGGAGTTTGGCATTGACTATAGTGATTGGGCGTTAAAAAATGACCCTTTTTATGTTAATGATGTTCTTGGTGAGCTTAAATTGAATGCATGATATTGAATAAGGGCGAATTTGTTCAAAGGTTTTGTTTTTGCAGTTTTCAGGTACCCGGCTCCGAATGGATTCGGATCTCCTCATAGTGTTTACTTGTTACCGAACTTGGAGAGTTTCTCGAACTGTGATTTTTCAAAGGCTCGAGAGGTAGCGAATACGAGCCAAGGAGAAGGAGATGGGTTCGAGTTCGTGCTCGAACAATCTAAGACTTACTACTTTGCTTGTGGTGAACGCAATGGGTTGCATTGCGTTGATGGAAACATGAAATTCTCTGTGTTACCAAAAGCTTACTAG

mRNA sequence

ATGGCTTCCTCGTCTTCCGCTGCCATCCTCGTCCTCGTTGTCTCTTGCATGTCAGTTGTCTGTTCGGCCCGAGGTCCGAAAAAGATTGTCGTGGGCGGTCATCAAACGTGGGAGTTTGGCATTGACTATATTTTCAGGTACCCGGCTCCGAATGGATTCGGATCTCCTCATAGTGTTTACTTGTTACCGAACTTGGAGAGTTTCTCGAACTGTGATTTTTCAAAGGCTCGAGAGGTAGCGAATACGAGCCAAGGAGAAGGAGATGGGTTCGAGTTCGTGCTCGAACAATCTAAGACTTACTACTTTGCTTGTGGTGAACGCAATGGGTTGCATTGCGTTGATGGAAACATGAAATTCTCTGTGTTACCAAAAGCTTACTAG

Coding sequence (CDS)

ATGGCTTCCTCGTCTTCCGCTGCCATCCTCGTCCTCGTTGTCTCTTGCATGTCAGTTGTCTGTTCGGCCCGAGGTCCGAAAAAGATTGTCGTGGGCGGTCATCAAACGTGGGAGTTTGGCATTGACTATATTTTCAGGTACCCGGCTCCGAATGGATTCGGATCTCCTCATAGTGTTTACTTGTTACCGAACTTGGAGAGTTTCTCGAACTGTGATTTTTCAAAGGCTCGAGAGGTAGCGAATACGAGCCAAGGAGAAGGAGATGGGTTCGAGTTCGTGCTCGAACAATCTAAGACTTACTACTTTGCTTGTGGTGAACGCAATGGGTTGCATTGCGTTGATGGAAACATGAAATTCTCTGTGTTACCAAAAGCTTACTAG

Homology

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BLAST of CmoCh02G004470 vs. TrEMBL
Match: A0A061E0S0_THECC (CUB and sushi domain-containing protein 3 OS=Theobroma cacao GN=TCM_007009 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-30
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1


Query: 24  RGPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLES 83
            GPKKI+VGG Q W+FG++Y                +F+Y  P+    PHSVYLLPNL S
Sbjct: 48  NGPKKIIVGGSQNWQFGVNYTDWSLKNAPFYFNDTLVFKYDPPSNTTFPHSVYLLPNLRS 107

Query: 84  FSNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
           F NCD  KA+ +AN +QG G+GFEFVL++ + YYFACGERNG HC DG MKF+V+P
Sbjct: 108 FLNCDLRKAKMIANPTQGGGNGFEFVLKRWRPYYFACGERNGFHCKDGLMKFAVVP 163

[Close]

BLAST of CmoCh02G004470 vs. TrEMBL
Match: A0A151UAI8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_020562 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 26  PKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESFS 85
           P+KI+VGG + W FG +Y                +F+Y APN    PHSVYL PN  SF 
Sbjct: 46  PRKIIVGGSEHWHFGYNYTDWAIKNGPFYLNDTLVFKYDAPNATSFPHSVYLFPNFGSFL 105

Query: 86  NCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
           NCD  KA+ VAN  QGEG+GFEFVL++ + YYFACGERNG HC +GNMKF+V+P
Sbjct: 106 NCDVKKAKMVANPKQGEGEGFEFVLKRWQPYYFACGERNGFHCNNGNMKFAVMP 159

[Close]

BLAST of CmoCh02G004470 vs. TrEMBL
Match: V4UAL1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029789mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-28
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 25  GPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESF 84
           GPKKI+VGG   W FG +Y                +F+Y APN    PHSVY LPNL S+
Sbjct: 57  GPKKIIVGGSDNWRFGFNYSVWAFKNAPFYVNDVLVFKYDAPNDTVFPHSVYQLPNLWSY 116

Query: 85  SNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
             CD S+A+ +AN +QG+G+GFEFVL++   YYFACGER GLHC +G MKF VLP
Sbjct: 117 LRCDLSRAKMIANATQGDGEGFEFVLKRWLPYYFACGERGGLHCREGRMKFMVLP 171

[Close]

BLAST of CmoCh02G004470 vs. TrEMBL
Match: V4SBV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029377mg PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 60/115 (52.17%), Postives = 74/115 (64.35%), Query Frame = 1


Query: 25  GPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESF 84
           GPKKI+VGG   W FG +Y                +F+Y APN    PHSVY LPNL S+
Sbjct: 57  GPKKIIVGGSDNWRFGFNYSVWAFKNAPFYVNDVLVFKYDAPNDTVFPHSVYQLPNLWSY 116

Query: 85  SNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
             CD S+A+ +AN +QG+G+GFEFVL++   YYFACGE  GLHC +G MKF VLP
Sbjct: 117 LRCDLSRAKMIANATQGDGEGFEFVLKRWLPYYFACGEHGGLHCREGRMKFMVLP 171

[Close]

BLAST of CmoCh02G004470 vs. TrEMBL
Match: V4RPI0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029852mg PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 61/115 (53.04%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 25  GPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESF 84
           GP KIVVGG   W FG +Y                +F+Y  PN    PHSVY LPNL S+
Sbjct: 58  GPSKIVVGGSDNWHFGFNYSVWAFQNSPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSY 117

Query: 85  SNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
             CD S+A+ +ANT+QG GDGFEFVL++ + YYFACGER G HC +G MKF VLP
Sbjct: 118 LRCDLSRAKMIANTTQGGGDGFEFVLKRWQPYYFACGERGGFHCREGRMKFMVLP 172

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BLAST of CmoCh02G004470 vs. TAIR10
Match: AT2G15780.1 (AT2G15780.1 Cupredoxin superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 1


Query: 25  GPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESF 84
           GP+KI+VGG + W +G +Y                +F+Y  P  F   HSVYLLPN  S+
Sbjct: 140 GPRKIIVGGDKEWTYGFNYADWASKTAPFFLNDILVFKYNPPAPF--THSVYLLPNPSSY 199

Query: 85  SNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
             CD  K + +A+  QG G GFEFVL+Q K YY +CGE +G HC +G MKF+V+P
Sbjct: 200 EKCDVKKGKMIASPKQGAGKGFEFVLKQMKPYYISCGEHDGAHCSNGTMKFTVMP 252

[Close]

BLAST of CmoCh02G004470 vs. TAIR10
Match: AT2G15770.1 (AT2G15770.1 Cupredoxin superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 8.2e-16
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 1


Query: 26  PKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESFS 85
           PKKI+VGG   W+ G+DY                +F+Y         ++VYL  +  S+ 
Sbjct: 143 PKKIIVGGSDGWKKGLDYKDWASKNAPFYVNDVLVFKYD--KSAKRRNNVYLFKDRWSYM 202

Query: 86  NCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
           NCD   AR++ +T +G  + F F L++ + Y+FA GE +G +C + NMKF++ P
Sbjct: 203 NCDIKNARKIGSTRKGSEESFNFTLKKIQPYFFASGEHDGDYCRNHNMKFTIFP 254

[Close]

BLAST of CmoCh02G004470 vs. TAIR10
Match: AT4G33930.1 (AT4G33930.1 Cupredoxin superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-08
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1


Query: 57  HSVYLLPNLESFSNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGN 116
           + VYLLP+++SF  C+ ++ +++         GF+ +L + +TYYFA G+ N   C + N
Sbjct: 273 NDVYLLPDMKSFKRCNVARGKKLVARGGSSSRGFKLLLRKVQTYYFASGDHN--EC-NHN 332

Query: 117 MKFSVLP 124
           MKFSV P
Sbjct: 333 MKFSVHP 336

[Close]

BLAST of CmoCh02G004470 vs. NCBI nr
Match: gi|590686390|ref|XP_007042366.1| (CUB and sushi domain-containing protein 3 [Theobroma cacao])

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1


Query: 24  RGPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLES 83
            GPKKI+VGG Q W+FG++Y                +F+Y  P+    PHSVYLLPNL S
Sbjct: 48  NGPKKIIVGGSQNWQFGVNYTDWSLKNAPFYFNDTLVFKYDPPSNTTFPHSVYLLPNLRS 107

Query: 84  FSNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
           F NCD  KA+ +AN +QG G+GFEFVL++ + YYFACGERNG HC DG MKF+V+P
Sbjct: 108 FLNCDLRKAKMIANPTQGGGNGFEFVLKRWRPYYFACGERNGFHCKDGLMKFAVVP 163

[Close]

BLAST of CmoCh02G004470 vs. NCBI nr
Match: gi|1012365145|gb|KYP76327.1| (hypothetical protein KK1_020562 [Cajanus cajan])

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-29
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 26  PKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESFS 85
           P+KI+VGG + W FG +Y                +F+Y APN    PHSVYL PN  SF 
Sbjct: 46  PRKIIVGGSEHWHFGYNYTDWAIKNGPFYLNDTLVFKYDAPNATSFPHSVYLFPNFGSFL 105

Query: 86  NCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
           NCD  KA+ VAN  QGEG+GFEFVL++ + YYFACGERNG HC +GNMKF+V+P
Sbjct: 106 NCDVKKAKMVANPKQGEGEGFEFVLKRWQPYYFACGERNGFHCNNGNMKFAVMP 159

[Close]

BLAST of CmoCh02G004470 vs. NCBI nr
Match: gi|567860820|ref|XP_006423064.1| (hypothetical protein CICLE_v10029789mg [Citrus clementina])

HSP 1 Score: 132.5 bits (332), Expect = 5.2e-28
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 25  GPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESF 84
           GPKKI+VGG   W FG +Y                +F+Y APN    PHSVY LPNL S+
Sbjct: 57  GPKKIIVGGSDNWRFGFNYSVWAFKNAPFYVNDVLVFKYDAPNDTVFPHSVYQLPNLWSY 116

Query: 85  SNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
             CD S+A+ +AN +QG+G+GFEFVL++   YYFACGER GLHC +G MKF VLP
Sbjct: 117 LRCDLSRAKMIANATQGDGEGFEFVLKRWLPYYFACGERGGLHCREGRMKFMVLP 171

[Close]

BLAST of CmoCh02G004470 vs. NCBI nr
Match: gi|659118621|ref|XP_008459215.1| (PREDICTED: extensin, partial [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 24  RGPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLES 83
           + P+KI+VGG   W+ G DY                +F+Y  PN    PHSVYLLPN+ S
Sbjct: 36  QSPRKIIVGGSNQWQLGFDYTDWALKNGPFYVNDILVFKYDPPNMSTPPHSVYLLPNMRS 95

Query: 84  FSNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
           F+NCD  KA+ +AN  QG GDGFEFVL+    YYFACGE NG HC  G+MKF++ P
Sbjct: 96  FANCDLGKAKMLANIKQGSGDGFEFVLKDQNPYYFACGEGNGFHCKLGSMKFTITP 151

[Close]

BLAST of CmoCh02G004470 vs. NCBI nr
Match: gi|567860822|ref|XP_006423065.1| (hypothetical protein CICLE_v10029377mg [Citrus clementina])

HSP 1 Score: 130.6 bits (327), Expect = 2.0e-27
Identity = 60/115 (52.17%), Postives = 74/115 (64.35%), Query Frame = 1


Query: 25  GPKKIVVGGHQTWEFGIDY----------------IFRYPAPNGFGSPHSVYLLPNLESF 84
           GPKKI+VGG   W FG +Y                +F+Y APN    PHSVY LPNL S+
Sbjct: 57  GPKKIIVGGSDNWRFGFNYSVWAFKNAPFYVNDVLVFKYDAPNDTVFPHSVYQLPNLWSY 116

Query: 85  SNCDFSKAREVANTSQGEGDGFEFVLEQSKTYYFACGERNGLHCVDGNMKFSVLP 124
             CD S+A+ +AN +QG+G+GFEFVL++   YYFACGE  GLHC +G MKF VLP
Sbjct: 117 LRCDLSRAKMIANATQGDGEGFEFVLKRWLPYYFACGEHGGLHCREGRMKFMVLP 171

The following BLAST results are available for this feature:

BLAST of CmoCh02G004470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G004470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E0S0_THECC	1.7e-30	54.31	CUB and sushi domain-containing protein 3 OS=Theobroma cacao GN=TCM_007009 PE=4 ...	[more]
A0A151UAI8_CAJCA	1.5e-29	54.39	Uncharacterized protein OS=Cajanus cajan GN=KK1_020562 PE=4 SV=1	[more]
V4UAL1_9ROSI	3.6e-28	53.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029789mg PE=4 SV=1	[more]
V4SBV5_9ROSI	1.4e-27	52.17	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029377mg PE=4 SV=1	[more]
V4RPI0_9ROSI	1.4e-27	53.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029852mg PE=4 SV=1	[more]

BLAST of CmoCh02G004470 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15780.1	1.1e-25	45.22	Cupredoxin superfamily protein	[more]
AT2G15770.1	8.2e-16	34.21	Cupredoxin superfamily protein	[more]
AT4G33930.1	3.7e-08	38.81	Cupredoxin superfamily protein	[more]

BLAST of CmoCh02G004470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590686390\|ref\|XP_007042366.1\|	2.5e-30	54.31	CUB and sushi domain-containing protein 3 [Theobroma cacao]	[more]
gi\|1012365145\|gb\|KYP76327.1\|	2.1e-29	54.39	hypothetical protein KK1_020562 [Cajanus cajan]	[more]
gi\|567860820\|ref\|XP_006423064.1\|	5.2e-28	53.04	hypothetical protein CICLE_v10029789mg [Citrus clementina]	[more]
gi\|659118621\|ref\|XP_008459215.1\|	2.0e-27	50.00	PREDICTED: extensin, partial [Cucumis melo]	[more]
gi\|567860822\|ref\|XP_006423065.1\|	2.0e-27	52.17	hypothetical protein CICLE_v10029377mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003245	Phytocyanin_dom
IPR008972	Cupredoxin

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004470.1	CmoCh02G004470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PROFILE	PS51485	PHYTOCYANIN	coord: 27..125 score: 13
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 45..123 score: 9.6
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 27..123 score: 3.86
None	No IPR available	PANTHER	PTHR34052	FAMILY NOT NAMED	coord: 5..123 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G004470	Cucurbita moschata (Rifu)	cmocmoB404
CmoCh02G004470	Cucumber (Gy14) v1	cgycmoB0156
CmoCh02G004470	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G004470	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G004470	Wild cucumber (PI 183967)	cmocpiB582
CmoCh02G004470	Cucumber (Chinese Long) v2	cmocuB577
CmoCh02G004470	Melon (DHL92) v3.5.1	cmomeB524
CmoCh02G004470	Watermelon (Charleston Gray)	cmowcgB507
CmoCh02G004470	Watermelon (97103) v1	cmowmB538
CmoCh02G004470	Cucurbita pepo (Zucchini)	cmocpeB575
CmoCh02G004470	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G004470	Bottle gourd (USVL1VR-Ls)	cmolsiB533
CmoCh02G004470	Bottle gourd (USVL1VR-Ls)	cmolsiB545
CmoCh02G004470	Cucumber (Gy14) v2	cgybcmoB220
CmoCh02G004470	Melon (DHL92) v3.6.1	cmomedB604
CmoCh02G004470	Silver-seed gourd	carcmoB1074
CmoCh02G004470	Silver-seed gourd	carcmoB1415
CmoCh02G004470	Cucumber (Chinese Long) v3	cmocucB0687
CmoCh02G004470	Watermelon (97103) v2	cmowmbB592
CmoCh02G004470	Watermelon (97103) v2	cmowmbB637
CmoCh02G004470	Wax gourd	cmowgoB0731
CmoCh02G004470	Wax gourd	cmowgoB0736
CmoCh02G004470	Wax gourd	cmowgoB0752