CmoCh01G008980 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTACCCGAGACGCAGGTTGTGGAGAAAATCTTGAGGTCGTTAACAGACAACTTCGAGAATGTTGTGTGTGCCATAGAAGAGTCGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTGCCGGTTCTCTCGAGGCACACGAGCAACGCAAGAAAAAGGAGGAGGAGCCGCTCGATCAAGCGCTTCAAAAGAAGGCATCAATAAAGGATGGAAAGATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGGAAGCCGCGGGAATGGTCGAGCTACTCAAGGCAATAGTCACGAAGAAAACTACCATGAGAAGAGACTGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAATCAAGAGTGCGGTCAAGGATACAATTTCAACGTCCAGTGCTATAAATGTCAGAAATATGACCACTATGCAAATAATTGTAACTCCGACAGATGTTACAATTGTGGCAGAATGGGTCACTATGCAAGAGATTGTCGAACCAAAGAGAAGGTGGAAGAATCCATCAACCTAGCCTTGGATGACACAACAAATGGAGGCATCCTCTTGATGGCCCAAAACAAAGAGACAAATACAAAAGGAGACGGCGGTGCGAAGACAATGGCGATAGTCGTGAGGTAG ATGTTACCCGAGACGCAGGTTGTGGAGAAAATCTTGAGGTCGTTAACAGACAACTTCGAGAATGTTGTGTGTGCCATAGAAGAGTCGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTGCCGGTTCTCTCGAGGCACACGAGCAACGCAAGAAAAAGGAGGAGGAGCCGCTCGATCAAGCGCTTCAAAAGAAGGCATCAATAAAGGATGGAAAGATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGGAAGCCGCGGGAATGGTCGAGCTACTCAAGGCAATAGTCACGAAGAAAACTACCATGAGAAGAGACTGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAATCAAGAGTGCGGTCAAGGATACAATTTCAACGTCCAGTGCTATAAATGTCAGAAATATGACCACTATGCAAATAATTGTAACTCCGACAGATGTTACAATTGTGGCAGAATGGGTCACTATGCAAGAGATTGTCGAACCAAAGAGAAGGTGGAAGAATCCATCAACCTAGCCTTGGATGACACAACAAATGGAGGCATCCTCTTGATGGCCCAAAACAAAGAGACAAATACAAAAGGAGACGGCGGTGCGAAGACAATGGCGATAGTCGTGAGGTAG ATGTTACCCGAGACGCAGGTTGTGGAGAAAATCTTGAGGTCGTTAACAGACAACTTCGAGAATGTTGTGTGTGCCATAGAAGAGTCGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTGCCGGTTCTCTCGAGGCACACGAGCAACGCAAGAAAAAGGAGGAGGAGCCGCTCGATCAAGCGCTTCAAAAGAAGGCATCAATAAAGGATGGAAAGATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGGAAGCCGCGGGAATGGTCGAGCTACTCAAGGCAATAGTCACGAAGAAAACTACCATGAGAAGAGACTGTCGAGCCAAGCAAATTGGCGTGGAAGAGGACGCAATCAAGAGTGCGGTCAAGGATACAATTTCAACGTCCAGTGCTATAAATGTCAGAAATATGACCACTATGCAAATAATTGTAACTCCGACAGATGTTACAATTGTGGCAGAATGGGTCACTATGCAAGAGATTGTCGAACCAAAGAGAAGGTGGAAGAATCCATCAACCTAGCCTTGGATGACACAACAAATGGAGGCATCCTCTTGATGGCCCAAAACAAAGAGACAAATACAAAAGGAGACGGCGGTGCGAAGACAATGGCGATAGTCGTGAGGTAG
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A059QBK0_PHAVU (Polyprotein OS=Phaseolus vulgaris PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 6.4e-62 Identity = 132/202 (65.35%), Postives = 159/202 (78.71%), Query Frame = 1
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A151QX97_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_044011 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 3.2e-45 Identity = 108/199 (54.27%), Postives = 131/199 (65.83%), Query Frame = 1
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A151T3L7_CAJCA (Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_016136 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.4e-37 Identity = 105/222 (47.30%), Postives = 134/222 (60.36%), Query Frame = 1
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A151SMJ1_CAJCA (Gag polyprotein OS=Cajanus cajan GN=KK1_002198 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 7.1e-37 Identity = 94/191 (49.21%), Postives = 127/191 (66.49%), Query Frame = 1
BLAST of CmoCh01G008980 vs. TrEMBL
Match: A0A151TA96_CAJCA (Gag polyprotein OS=Cajanus cajan GN=KK1_018540 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 7.1e-37 Identity = 98/199 (49.25%), Postives = 126/199 (63.32%), Query Frame = 1
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|545693870|gb|AGW47867.1| (polyprotein [Phaseolus vulgaris]) HSP 1 Score: 245.4 bits (625), Expect = 9.1e-62 Identity = 132/202 (65.35%), Postives = 159/202 (78.71%), Query Frame = 1
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|1012322726|gb|KYP34977.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]) HSP 1 Score: 189.9 bits (481), Expect = 4.6e-45 Identity = 108/199 (54.27%), Postives = 131/199 (65.83%), Query Frame = 1
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|1012350441|gb|KYP61630.1| (Gag-Pol polyprotein [Cajanus cajan]) HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37 Identity = 105/222 (47.30%), Postives = 134/222 (60.36%), Query Frame = 1
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|1012344779|gb|KYP55971.1| (Gag polyprotein [Cajanus cajan]) HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36 Identity = 94/191 (49.21%), Postives = 127/191 (66.49%), Query Frame = 1
BLAST of CmoCh01G008980 vs. NCBI nr
Match: gi|1012352765|gb|KYP63953.1| (Gag polyprotein [Cajanus cajan]) HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36 Identity = 98/199 (49.25%), Postives = 126/199 (63.32%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |