CmaCh12G005630.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh12G005630.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDehydration responsive element binding transcription factor
LocationCma_Chr12 : 2940087 .. 2940332 (-)
Sequence length246
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCGGTGGTGTTTTACCTGAGAGGACCATCCGCCCGCCGTAACTTCCCGGACCTGATCTTACAGGACATGAATCACAAGCTGCTCGATTTTCCCCCTTCTTCAATACGCAGAAGAGCTATTGAGGTCGGTGCTAGAGTCGATGCCGCTGCCCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCCAGAAAGCTCCGACGAAGATTGA

mRNA sequence

ATGACACCGGTGGTGTTTTACCTGAGAGGACCATCCGCCCGCCGTAACTTCCCGGACCTGATCTTACAGGACATGAATCACAAGCTGCTCGATTTTCCCCCTTCTTCAATACGCAGAAGAGCTATTGAGGTCGGTGCTAGAGTCGATGCCGCTGCCCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCCAGAAAGCTCCGACGAAGATTGA

Coding sequence (CDS)

ATGACACCGGTGGTGTTTTACCTGAGAGGACCATCCGCCCGCCGTAACTTCCCGGACCTGATCTTACAGGACATGAATCACAAGCTGCTCGATTTTCCCCCTTCTTCAATACGCAGAAGAGCTATTGAGGTCGGTGCTAGAGTCGATGCCGCTGCCCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGACAAGCCTGATTTGAACCAGTTTCCGGACCCAGAAAGCTCCGACGAAGATTGA

Protein sequence

MTPVVFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDPESSDED
BLAST of CmaCh12G005630.1 vs. Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-12
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNH----KLLDFPPSSIRRRAIEVGARVDA--AAHHASQR 64
           VFYLRGPSAR NFPDL+LQ+ +H       D P + IR +A EVGARVDA  A+   S  
Sbjct: 74  VFYLRGPSARLNFPDLLLQEEDHLSAATTADMPAALIREKAAEVGARVDALLASAAPSMA 133

Query: 65  QSKPISDKPDLNQFPD 75
            S P   KPDLNQ P+
Sbjct: 134 HSTPPVIKPDLNQIPE 149

BLAST of CmaCh12G005630.1 vs. Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKL---LDFPPSSIRRRAIEVGARVDAAAHHASQRQSK 64
           VFYLRGPSAR NFP+ + +D N       D  P+ IR++A EVGARVD     A  R   
Sbjct: 79  VFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVD-----AELRLEN 138

Query: 65  PISDKPDLNQFPD 75
            + +  D+N+ P+
Sbjct: 139 RMVENLDMNKLPE 146

BLAST of CmaCh12G005630.1 vs. Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.1e-06
Identity = 36/98 (36.73%), Postives = 50/98 (51.02%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLI----LQDMNHKLLDFPPSSIRRRAIEVGARVDAAAH------- 64
           VFYLRGPSAR NFP+L+    + +   +  D   + IRR+A EVGA+VDA          
Sbjct: 71  VFYLRGPSARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTG 130

Query: 65  ----------HASQRQSKPISDKPDLNQFPDPESSDED 82
                        ++      ++ DLN+ PDPE+SD D
Sbjct: 131 GENRGDYEKIENCRKSGNGSLERVDLNKLPDPENSDGD 168

BLAST of CmaCh12G005630.1 vs. TrEMBL
Match: A0A0A0LR87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G356600 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-28
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDAAAHHASQRQSKPIS 64
           VFYLRGPSAR NFPDLILQDM+H+LLD  PSSIR+RAIEVGARVDAAAH  S RQSKPIS
Sbjct: 66  VFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAAHQTSLRQSKPIS 125

Query: 65  DKPDLNQFPDPESSDED 82
           DKPDLNQFPDPESS ED
Sbjct: 126 DKPDLNQFPDPESSGED 142

BLAST of CmaCh12G005630.1 vs. TrEMBL
Match: A0A125R6G9_BETPL (ERF11 OS=Betula platyphylla PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-16
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDA---AAHHASQRQSK 64
           VFYLRGPSAR NFPDL+ Q+ + +LLD   +SIR++A EVGARVDA   A  HAS  +S 
Sbjct: 68  VFYLRGPSARLNFPDLLFQEEDDELLDVSAASIRKKATEVGARVDALHSAGLHASPSKSS 127

Query: 65  PISDKPDLNQFPDPESSDED 82
            +S+ PDLN++P PE+SDED
Sbjct: 128 RVSETPDLNEYPGPENSDED 147

BLAST of CmaCh12G005630.1 vs. TrEMBL
Match: A0A0A0L4Y9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641590 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-14
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDA--AAHHASQRQSKP 64
           VFYLRGP+AR NFPDL+ +    +L D   +SIR+RA EVGARVDA   + HAS      
Sbjct: 73  VFYLRGPTARLNFPDLMFE--TDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSAGTQ 132

Query: 65  ISDKPDLNQFPDPESSDED 82
           ISDKPDLN++P+PE+SD+D
Sbjct: 133 ISDKPDLNEYPNPETSDDD 149

BLAST of CmaCh12G005630.1 vs. TrEMBL
Match: M5XH14_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012302mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDA--AAHHASQRQSKP 64
           VFYLRGPSAR NFP+L+ Q+   +L D   +SIR++A EVGA+VDA   AH +   QSK 
Sbjct: 92  VFYLRGPSARLNFPELVFQEDGQQLHDMSAASIRKKATEVGAKVDAVETAHRSPISQSKT 151

Query: 65  I-----SDKPDLNQFPDPESSDED 82
                 S KPDLN++PDPE+SDE+
Sbjct: 152 TSSLVNSQKPDLNKYPDPENSDEN 175

BLAST of CmaCh12G005630.1 vs. TrEMBL
Match: V9M5D1_MANES (ERF/AP2 domain-containing transcription factor OS=Manihot esculenta GN=RAP2.1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.7e-13
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDA---AAHHASQRQ-S 64
           VFYLRGPSAR NFPDLI  + N  L D   +SIR++A EVGA+VDA    A HAS++  +
Sbjct: 74  VFYLRGPSARLNFPDLIYHEDN--LRDMSAASIRKKATEVGAQVDALQQTALHASEKNPN 133

Query: 65  KPISDKPDLNQFPDPESSDED 82
           + + +KPDLNQ+P PESSDE+
Sbjct: 134 RVVPEKPDLNQYPTPESSDEE 152

BLAST of CmaCh12G005630.1 vs. TAIR10
Match: AT1G46768.1 (AT1G46768.1 related to AP2 1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-13
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNH----KLLDFPPSSIRRRAIEVGARVDA--AAHHASQR 64
           VFYLRGPSAR NFPDL+LQ+ +H       D P + IR +A EVGARVDA  A+   S  
Sbjct: 74  VFYLRGPSARLNFPDLLLQEEDHLSAATTADMPAALIREKAAEVGARVDALLASAAPSMA 133

Query: 65  QSKPISDKPDLNQFPD 75
            S P   KPDLNQ P+
Sbjct: 134 HSTPPVIKPDLNQIPE 149

BLAST of CmaCh12G005630.1 vs. TAIR10
Match: AT4G06746.1 (AT4G06746.1 related to AP2 9)

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKL---LDFPPSSIRRRAIEVGARVDAAAHHASQRQSK 64
           VFYLRGPSAR NFP+ + +D N       D  P+ IR++A EVGARVD     A  R   
Sbjct: 79  VFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVD-----AELRLEN 138

Query: 65  PISDKPDLNQFPD 75
            + +  D+N+ P+
Sbjct: 139 RMVENLDMNKLPE 146

BLAST of CmaCh12G005630.1 vs. TAIR10
Match: AT2G23340.1 (AT2G23340.1 DREB and EAR motif protein 3)

HSP 1 Score: 51.2 bits (121), Expect = 3.4e-07
Identity = 36/98 (36.73%), Postives = 50/98 (51.02%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLI----LQDMNHKLLDFPPSSIRRRAIEVGARVDAAAH------- 64
           VFYLRGPSAR NFP+L+    + +   +  D   + IRR+A EVGA+VDA          
Sbjct: 71  VFYLRGPSARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTG 130

Query: 65  ----------HASQRQSKPISDKPDLNQFPDPESSDED 82
                        ++      ++ DLN+ PDPE+SD D
Sbjct: 131 GENRGDYEKIENCRKSGNGSLERVDLNKLPDPENSDGD 168

BLAST of CmaCh12G005630.1 vs. TAIR10
Match: AT3G50260.1 (AT3G50260.1 cooperatively regulated by ethylene and jasmonate 1)

HSP 1 Score: 50.1 bits (118), Expect = 7.7e-07
Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDAAAHHASQRQSK--- 64
           VFYLRGP+A  NFP+L+         D   ++IR++A EVGA+VDA      Q   +   
Sbjct: 64  VFYLRGPTATLNFPELLPCTSAE---DMSAATIRKKATEVGAQVDAIGATVVQNNKRRRV 123

Query: 65  ---------PISDKPDLNQFPDPESSDED 82
                     + +  DLN+ PDPE+ D+D
Sbjct: 124 FSQKRDFGGGLLELVDLNKLPDPENLDDD 149

BLAST of CmaCh12G005630.1 vs. TAIR10
Match: AT5G67190.1 (AT5G67190.1 DREB and EAR motif protein 2)

HSP 1 Score: 48.5 bits (114), Expect = 2.2e-06
Identity = 40/117 (34.19%), Postives = 51/117 (43.59%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDAAA------------ 64
           VFYLRGP+AR NFP+L L        D   ++IR++A EVGA+VDA              
Sbjct: 64  VFYLRGPTARLNFPEL-LPGEKFSDEDMSAATIRKKATEVGAQVDALGTAVQNNRHRVFG 123

Query: 65  ------------HHASQ----------------RQSKPISDKPDLNQFPDPESSDED 82
                       H   Q                R    + D+ DLN+ PDPESSDE+
Sbjct: 124 QNRDSDVDNKNFHRNYQNGEREEEEEDEDDKRLRSGGRLLDRVDLNKLPDPESSDEE 179

BLAST of CmaCh12G005630.1 vs. NCBI nr
Match: gi|659087715|ref|XP_008444599.1| (PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-29
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDAAAHHASQRQSKPIS 64
           VFYLRGPSAR NFPDLILQDM+H+LLD  PSSIR+RAIEVGARVDAAAH  S RQSKPIS
Sbjct: 66  VFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAAHQTSLRQSKPIS 125

Query: 65  DKPDLNQFPDPESSDED 82
           DKPDLNQFPDPESSDED
Sbjct: 126 DKPDLNQFPDPESSDED 142

BLAST of CmaCh12G005630.1 vs. NCBI nr
Match: gi|449450247|ref|XP_004142875.1| (PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-28
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDAAAHHASQRQSKPIS 64
           VFYLRGPSAR NFPDLILQDM+H+LLD  PSSIR+RAIEVGARVDAAAH  S RQSKPIS
Sbjct: 66  VFYLRGPSARLNFPDLILQDMDHQLLDVSPSSIRKRAIEVGARVDAAAHQTSLRQSKPIS 125

Query: 65  DKPDLNQFPDPESSDED 82
           DKPDLNQFPDPESS ED
Sbjct: 126 DKPDLNQFPDPESSGED 142

BLAST of CmaCh12G005630.1 vs. NCBI nr
Match: gi|985560748|gb|AMD11605.1| (ERF11 [Betula platyphylla])

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-16
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDA---AAHHASQRQSK 64
           VFYLRGPSAR NFPDL+ Q+ + +LLD   +SIR++A EVGARVDA   A  HAS  +S 
Sbjct: 68  VFYLRGPSARLNFPDLLFQEEDDELLDVSAASIRKKATEVGARVDALHSAGLHASPSKSS 127

Query: 65  PISDKPDLNQFPDPESSDED 82
            +S+ PDLN++P PE+SDED
Sbjct: 128 RVSETPDLNEYPGPENSDED 147

BLAST of CmaCh12G005630.1 vs. NCBI nr
Match: gi|449447039|ref|XP_004141277.1| (PREDICTED: ethylene-responsive transcription factor ERF011-like [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDA--AAHHASQRQSKP 64
           VFYLRGP+AR NFPDL+ +    +L D   +SIR+RA EVGARVDA   + HAS      
Sbjct: 73  VFYLRGPTARLNFPDLMFE--TDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSAGTQ 132

Query: 65  ISDKPDLNQFPDPESSDED 82
           ISDKPDLN++P+PE+SD+D
Sbjct: 133 ISDKPDLNEYPNPETSDDD 149

BLAST of CmaCh12G005630.1 vs. NCBI nr
Match: gi|659103341|ref|XP_008452588.1| (PREDICTED: ethylene-responsive transcription factor ERF011-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1

Query: 5   VFYLRGPSARRNFPDLILQDMNHKLLDFPPSSIRRRAIEVGARVDA--AAHHASQRQSKP 64
           VFYLRGP+AR NFPDL+ +    +L D   +SIR+RA EVGARVDA   + HAS      
Sbjct: 75  VFYLRGPTARLNFPDLMFE--TDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSAGTQ 134

Query: 65  ISDKPDLNQFPDPESSDED 82
           +SDKPDLN++P+PE+SD+D
Sbjct: 135 VSDKPDLNEYPNPETSDDD 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RAP21_ARATH2.6e-1255.26Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-... [more]
RAP29_ARATH2.1e-0643.84Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-... [more]
ERF08_ARATH6.1e-0636.73Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF00... [more]
Match NameE-valueIdentityDescription
A0A0A0LR87_CUCSA2.3e-2887.01Uncharacterized protein OS=Cucumis sativus GN=Csa_2G356600 PE=4 SV=1[more]
A0A125R6G9_BETPL3.5e-1660.00ERF11 OS=Betula platyphylla PE=2 SV=1[more]
A0A0A0L4Y9_CUCSA9.5e-1458.23Uncharacterized protein OS=Cucumis sativus GN=Csa_4G641590 PE=4 SV=1[more]
M5XH14_PRUPE2.1e-1354.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012302mg PE=4 SV=1[more]
V9M5D1_MANES4.7e-1358.02ERF/AP2 domain-containing transcription factor OS=Manihot esculenta GN=RAP2.1 PE... [more]
Match NameE-valueIdentityDescription
AT1G46768.11.4e-1355.26 related to AP2 1[more]
AT4G06746.11.2e-0743.84 related to AP2 9[more]
AT2G23340.13.4e-0736.73 DREB and EAR motif protein 3[more]
AT3G50260.17.7e-0737.08 cooperatively regulated by ethylene and jasmonate 1[more]
AT5G67190.12.2e-0634.19 DREB and EAR motif protein 2[more]
Match NameE-valueIdentityDescription
gi|659087715|ref|XP_008444599.1|5.1e-2988.31PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo][more]
gi|449450247|ref|XP_004142875.1|3.3e-2887.01PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis sativus][more]
gi|985560748|gb|AMD11605.1|5.0e-1660.00ERF11 [Betula platyphylla][more]
gi|449447039|ref|XP_004141277.1|1.4e-1358.23PREDICTED: ethylene-responsive transcription factor ERF011-like [Cucumis sativus... [more]
gi|659103341|ref|XP_008452588.1|1.8e-1356.96PREDICTED: ethylene-responsive transcription factor ERF011-like [Cucumis melo][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh12G005630CmaCh12G005630gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh12G005630.1CmaCh12G005630.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G005630.1.CDS.1CmaCh12G005630.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G005630.1.exon.1CmaCh12G005630.1.exon.1exon


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31729FAMILY NOT NAMEDcoord: 5..81
score: 3.6
NoneNo IPR availablePANTHERPTHR31729:SF2ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1coord: 5..81
score: 3.6