CmaCh06G010200.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G010200.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Remorin, putative
Location	Cma_Chr06 : 6894684 .. 6897979 (+)
Sequence length	873

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTAAAGGCCCACGAGGATAGCGATAATCGTTGGTGAAATTTTTTGGAGATTTTTCATTTCTAATCATTTTTGCTCCGAATTCTGAGAACGATGGTTGCGGCGCCAGAAAATTCAGATTCCTCTCCCGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAAAAAGCCTTGGTTCCAGTGCCAGTCTCGAATAGTAATCTCTCTTTCTTCCTCTATGTTATCTGTTCGTTGTTGTGCTTTGCTTGTTGCTTGCGATTGCGACGATATCGATTTGTTCATTTCTGTCTCATTTCTTACCTTGATTTATCACGATATGAAGTGTTGGAGTGCTTGAATTATAGGCGAATTGTTGTGTGCTTTTTTCTTCATCGAGCGCGTACTGTGCATAGATTAGGAATTCAGGCCTTCGTCTTGTTATACTTTTCGCACTCTGTTTGGTCGTCGAGAAATGGATCTAGTCGAAGAATAGAATCTGTACAAATTTGATTGGGAGTGATGCCGATGCGTGAAAATTTGCTAGATCCAATTGAAATGATGAACTCCATATTACAGTAATGAATTCTTTTTGATGTTAGTATTGCATTGTTGGAGAAAGTCAAATGTAAATCCATCGCCTTCATATTTGTCGAAGTTCTTTTAATTCTATTCGTATGGGAGAATATTTTCCTCTTCATTAACATGCGGAACGTTTCACTCTTCTTTTTCAAAGTTCAACAATTACGCGAAAACATCAATGTTTAGGGTTGCATTTGGTATTTATCCAATAAGTTAGGTTCGGATTGAATCGATATTTTTATCTTTCTTTTGTAGTTTAGTACCATTTTGGTCTTTTATTTCCTAAGTACTTCTTAATTCCCAATCCCAGCATAATACTATTCACGGAAAGTCTCGTTTCACTCTTTTCCCGGATTTCCAGAGATGAAGAGAAATAAGTTTTTGTGCCTCTTGAATAATTTTTCCTCTCTTTGTTTTGTTATCAGTGACATATGCTGTACTGGGCCCATAGGCGTTTCTGATACTCTTTGGTTTTAACTGCCACTTAATTTATTCTTCAATATGCTTAAAGTGACAAATTGAAGATTATGCTTTAGCTTTTTATTAATTGTTTCCTTTATAGGTGTAAAGGAAGACATTGTTAAAAAAAAAAACTACAAATTGACGTAATAGCTTTCTCTAATTTGATTGTTTAGTAATTAGCAGTTGGGTAAGGTAGAATCAAGGCATTCGTCTTTATCAATACTTTTGAAGATGCTAATGCTAATAATGCAGCACAGCTGTCTAGCGTCGTCTTGAAGAATGATCTCCGTGTCCTTTCTGTCATTTGATTCTTCTTACCCGATAAAATTGGCCAAGAATTTAAATTAAAGTTGTTTAAGTTGCATCTTAACGACATACTACCTTATGGTTTTAACTTGCCATCTGTTTACTTTCCTTGGTAACTATTGATGGGGTGACAGGGTTCAGGCAATCGGTCTAACTCTCACCATGGATAGAGTTAGAATCTTGGCTGTGATTTGAAAATCATCACTCAGTTTGCTTTATACTGCGTATACTTCAATTTATTTTCATCCAAATTTCTTGCTAAAGTTAATATAGCATTGCTTTTGTCCCACCTTGATAACTTTTGTTTCCATCTTGTATTATAGCTTGTTTGATTTTCCTTCTAGTTTAATGGCTTTGTACTGTATTATACAGTTACCTTGGTTTATTGCATTAATTAGCCTGAAACCTCTATCTTTGGGTGCTTTTATAATTGCTTTACTGTTGGATCTTGGCAGAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGGTGAGCGTATAGCACGCATCTTATCCCATCTAAGTCTTCTAGTTTTACAATTATAAAATATTTTAAGATCTTTGTGCGGAAAACACAAGATTGTCCTGAAGAATGTTATCTTTGCTGTGGTAACAATTTGATCGTTCACAAACTGACCTGATCCTCAATTGTCTTAGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATTAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGTAAGGCTTTGATTGAACTCGTCCTATTTACTTATTAGATACAGGGGAGCGAGCTGGATTCTGATTCCCAACATTCATTCCTCTAATTTCCAAACTTAAAATTCAACTTTTTGCTGTATCACATCAGTATTCATGTCATGATAAGAACTTACGAACTGAAATATTTGTCTGACAATTTAATAGGGCCCAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGTAACTATTAATCCCTGTTCCCATTCTCGGGTTTAACAATAATTTTCAATTGGACATTTTACTTACGAGGTGAGGGATGATGAACACATCTCTTTGTGGAGAACACTCTGCACTCTTTATTAACACTAATCGAAAAGAGATTAGAACACTATAAAAAAAATTATTGCACTCTATACTTTGTATTTCTCTTGGATGAAAACCTAGATAGGGTGGAGAGTATTTACAATAGAATCTATCCCTAAAATATCTTGATCTTTGGGTGGAGGGTATTTATCTATTCCTAAGATCTCTTAATATTTTTCTTAAAATATCTGGATCTTTTCTTAAAATAGGTACCTTTATTCTTAAAATATCTCAATTATTTTCTTAAAATATGATTCATACCATTAGAGTATAAATGGTAGCTAAATTTTCTGGATTTGATTTGAGAAAGAAAAGTGGACAAGGAGAAAGTGTGGAATTGTTGTATAACAAGGTTGAGAAAACAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAATGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCGAAGAAATTTTTGGGATGTTTTTAAAAGCGTGATGAATTAATAATCCTGTGTGTATTTTTCCTGTTTTTACGTGTAAATCTTTTCATGTTTGGACGTTCGTCTTAGTAGTGTTTTAAGAATTTTGTTTTGTTTCTATAAAAATGTAAGATAAAAGTGGTGTTTTGGGTTTTGTTTGTGTGTTTCAAAAACTATAGTAAACTTTAAAAGCTCATTTCCATGCATTATACCATTTACACTGTGAATTGTTCGCTAATTATTCCATTTACTAATTTACCCTCCC

mRNA sequence

ATGTAAAGGCCCACGAGGATAGCGATAATCGTTGGTGAAATTTTTTGGAGATTTTTCATTTCTAATCATTTTTGCTCCGAATTCTGAGAACGATGGTTGCGGCGCCAGAAAATTCAGATTCCTCTCCCGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAAAAAGCCTTGGTTCCAGTGCCAGTCTCGAATAAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATTAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGGCCCAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAATGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCGAAGAAATTTTTGGGATGTTTTTAAAAGCGTGATGAATTAATAATCCTGTGTGTATTTTTCCTGTTTTTACGTGTAAATCTTTTCATGTTTGGACGTTCGTCTTAGTAGTGTTTTAAGAATTTTGTTTTGTTTCTATAAAAATGTAAGATAAAAGTGGTGTTTTGGGTTTTGTTTGTGTGTTTCAAAAACTATAGTAAACTTTAAAAGCTCATTTCCATGCATTATACCATTTACACTGTGAATTGTTCGCTAATTATTCCATTTACTAATTTACCCTCCC

Coding sequence (CDS)

ATGGTTGCGGCGCCAGAAAATTCAGATTCCTCTCCCGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAAAAAGCCTTGGTTCCAGTGCCAGTCTCGAATAAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATTAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGGCCCAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAATGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCGAAGAAATTTTTGGGATGTTTTTAA

Protein sequence

MVAAPENSDSSPASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF

Homology

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BLAST of CmaCh06G010200.1 vs. Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 113/172 (65.70%), Postives = 133/172 (77.33%), Query Frame = 1


Query: 11  SPASVPPPASVE-DKEKALVPVPVSNKTK-------EDSVPKKASGGSIDRDIALAEVEK 70
           +PA  P PA VE   EK   P PV +K         E+  PKKAS GS DRD+ LA++EK
Sbjct: 19  APAKEPTPAPVEVADEKIHNPPPVESKALAVVEKPIEEHTPKKASSGSADRDVILADLEK 78

Query: 71  EKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGE 130
           EK+ SFIKAWE+SEKSKAEN+AQKK+S V AWENSKKA +EA+L+KIEE+LEKKKA+YGE
Sbjct: 79  EKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGE 138

Query: 131 KMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           KMKNKVA IHK AEEK+AMVEA++ EELLKAEE  AK+RATG +PK   GCF
Sbjct: 139 KMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

[Close]

BLAST of CmaCh06G010200.1 vs. Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.5e-46
Identity = 113/173 (65.32%), Postives = 131/173 (75.72%), Query Frame = 1


Query: 2   VAAPENSDSSPASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVE 61
           V A E +  +PA  PP    E  + +   V V  K  E +  KK   GSIDRD  LA V 
Sbjct: 28  VVADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPEPADEKKE--GSIDRDAVLARVA 87

Query: 62  KEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYG 121
            EKR S IKAWE+SEKSKAENKAQKK+SA+ AWENSKKANLEA+LKK+EEQLEKKKAEY 
Sbjct: 88  TEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYT 147

Query: 122 EKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           EKMKNK+A++HKEAEEK+AM+EA+R E+LLKAEE AAK+RATGT PKK LG F
Sbjct: 148 EKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

[Close]

BLAST of CmaCh06G010200.1 vs. Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.5e-46
Identity = 103/159 (64.78%), Postives = 127/159 (79.87%), Query Frame = 1


Query: 16  PPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWEDS 75
           PPP  + D  KAL  V    K  E+  P K +  S+DRD+ LA++ KEKR SF++AWE+S
Sbjct: 57  PPPEQIFDDSKALTVV---EKPVEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEES 116

Query: 76  EKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEA 135
           EKSKAENKA+KK++ V AWENSKKA +EA+LKKIEEQLEKKKAEY E+MKNKVA IHKEA
Sbjct: 117 EKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEA 176

Query: 136 EEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           EE++AM+EA+R E++LKAEETAAK+RATG +PK   GCF
Sbjct: 177 EERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

[Close]

BLAST of CmaCh06G010200.1 vs. TrEMBL
Match: A0A0A0L3M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122490 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 6.2e-71
Identity = 158/183 (86.34%), Postives = 164/183 (89.62%), Query Frame = 1


Query: 1   MVAAPENSDSSPASVPPPASV---------EDKEKALVPVPVSNKTKEDSVPKKASGGSI 60
           MV APENS S+PA  PPPASV         EDKEKA+V VP+ NKTKED+VPKKASGGSI
Sbjct: 1   MVTAPENSVSTPAPTPPPASVPAGVPSEAVEDKEKAMVTVPIVNKTKEDTVPKKASGGSI 60

Query: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEE 120
           DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLS+V AWENSKKANLEAKLKKIEE
Sbjct: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSSVLAWENSKKANLEAKLKKIEE 120

Query: 121 QLEKKKAEYGEKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFL 175
            LEKKKAEYGEKMKNKV +IHKEAEEKKA VEAQRSEELLKAEETAAKFRATGTIPKKFL
Sbjct: 121 DLEKKKAEYGEKMKNKVVLIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 180

[Close]

BLAST of CmaCh06G010200.1 vs. TrEMBL
Match: B9RDP4_RICCO (Remorin, putative OS=Ricinus communis GN=RCOM_1614760 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-51
Identity = 123/162 (75.93%), Postives = 136/162 (83.95%), Query Frame = 1


Query: 13  ASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAW 72
           A+VP P    D  KAL  V    +   +S PKK SGGS+DRDIALAEVEKEKR SFIKAW
Sbjct: 31  ATVPTPEEKPDDSKALAVV----EKVPESGPKKTSGGSLDRDIALAEVEKEKRNSFIKAW 90

Query: 73  EDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIH 132
           EDSEKSKAENKAQKKLS+V+AWENSKKA LEAKL+KIEEQLEKKKAEY EKMKNKVA++H
Sbjct: 91  EDSEKSKAENKAQKKLSSVTAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVH 150

Query: 133 KEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           K+AEEK+AMVEAQR EE+LKAEE AAK+RATG  PKK LGCF
Sbjct: 151 KQAEEKRAMVEAQRGEEVLKAEEMAAKYRATGQTPKKLLGCF 188

[Close]

BLAST of CmaCh06G010200.1 vs. TrEMBL
Match: A0A067JXN4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14423 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.5e-51
Identity = 120/160 (75.00%), Postives = 134/160 (83.75%), Query Frame = 1


Query: 15  VPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWED 74
           VPPP    D+ KAL  V    +   +S PKK SGGS+DRDIALAEVEKEKR SFIKAWED
Sbjct: 39  VPPPEEKPDESKALAVV----EKIPESAPKKISGGSLDRDIALAEVEKEKRNSFIKAWED 98

Query: 75  SEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKE 134
           SEKSKAENKAQKK SAV AWENSKKA LEAKL+KIEEQLEKKKAEY EKMKNK+A++HK+
Sbjct: 99  SEKSKAENKAQKKKSAVEAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKIALVHKQ 158

Query: 135 AEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           AEEK+A+VEAQR EE+LKAEE AAK+RATG  P+K LGCF
Sbjct: 159 AEEKRAIVEAQRGEEMLKAEEMAAKYRATGQTPRKLLGCF 194

[Close]

BLAST of CmaCh06G010200.1 vs. TrEMBL
Match: T2DM60_PHAVU (Remorin family protein OS=Phaseolus vulgaris GN=PHAVU_010G096300g PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-50
Identity = 124/191 (64.92%), Postives = 144/191 (75.39%), Query Frame = 1


Query: 10  SSPASVPPPASVED-----------KEKALVPVPV---------------SNKTKEDSVP 69
           + PASVP PA+VE            K  A VP PV               S KT  + V 
Sbjct: 8   AEPASVPAPATVEPQLAEALDSASKKATAAVPAPVAAETKALAVVEKEKESEKTPPEPVK 67

Query: 70  KKASGGSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLE 129
           KKA+GGS+DRDIALAE+EKEKRFS +KAWE+SEKSKAENKAQK LSAV+AWENSKKA LE
Sbjct: 68  KKATGGSLDRDIALAEIEKEKRFSNVKAWEESEKSKAENKAQKHLSAVAAWENSKKAALE 127

Query: 130 AKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRAT 175
           A+L+KIEEQLEKKKAEYGEKMKNK+A++HK+AEEK+A VEA+R EE+L AEE+AAK+RAT
Sbjct: 128 AQLRKIEEQLEKKKAEYGEKMKNKIALVHKQAEEKRATVEAKRGEEILNAEESAAKYRAT 187

[Close]

BLAST of CmaCh06G010200.1 vs. TrEMBL
Match: A0A061DUD4_THECC (Remorin family protein OS=Theobroma cacao GN=TCM_005370 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-49
Identity = 117/173 (67.63%), Postives = 136/173 (78.61%), Query Frame = 1


Query: 13  ASVPPPASVEDKEKALVPVPVSNKTKE-----------DSVPKKASGGSIDRDIALAEVE 72
           A  PPP +V +++ A+ P P   K  +           +  PKK SGGS DRDIALAEVE
Sbjct: 20  AEAPPPKAVSEEKTAVRPPPTEEKPDDSKALAVVEKAPEPAPKKISGGSHDRDIALAEVE 79

Query: 73  KEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYG 132
           KEKR SF++AWEDSEK+KAENKAQKKLS++ AWENSKKA LEAKL+KIEEQLEKKKAEY 
Sbjct: 80  KEKRLSFVRAWEDSEKTKAENKAQKKLSSIVAWENSKKAALEAKLRKIEEQLEKKKAEYA 139

Query: 133 EKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           E MKNKVA++HKEAEEK+AMVEA+R EE+LKAEE AAK+RATG  PKK LGCF
Sbjct: 140 ENMKNKVALLHKEAEEKRAMVEAKRGEEVLKAEEMAAKYRATGQTPKKLLGCF 192

[Close]

BLAST of CmaCh06G010200.1 vs. TAIR10
Match: AT2G45820.1 (AT2G45820.1 Remorin family protein)

HSP 1 Score: 187.6 bits (475), Expect = 6.6e-48
Identity = 113/172 (65.70%), Postives = 133/172 (77.33%), Query Frame = 1


Query: 11  SPASVPPPASVE-DKEKALVPVPVSNKTK-------EDSVPKKASGGSIDRDIALAEVEK 70
           +PA  P PA VE   EK   P PV +K         E+  PKKAS GS DRD+ LA++EK
Sbjct: 19  APAKEPTPAPVEVADEKIHNPPPVESKALAVVEKPIEEHTPKKASSGSADRDVILADLEK 78

Query: 71  EKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGE 130
           EK+ SFIKAWE+SEKSKAEN+AQKK+S V AWENSKKA +EA+L+KIEE+LEKKKA+YGE
Sbjct: 79  EKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGE 138

Query: 131 KMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           KMKNKVA IHK AEEK+AMVEA++ EELLKAEE  AK+RATG +PK   GCF
Sbjct: 139 KMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

[Close]

BLAST of CmaCh06G010200.1 vs. TAIR10
Match: AT3G61260.1 (AT3G61260.1 Remorin family protein)

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-47
Identity = 103/159 (64.78%), Postives = 127/159 (79.87%), Query Frame = 1


Query: 16  PPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWEDS 75
           PPP  + D  KAL  V    K  E+  P K +  S+DRD+ LA++ KEKR SF++AWE+S
Sbjct: 57  PPPEQIFDDSKALTVV---EKPVEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEES 116

Query: 76  EKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEA 135
           EKSKAENKA+KK++ V AWENSKKA +EA+LKKIEEQLEKKKAEY E+MKNKVA IHKEA
Sbjct: 117 EKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEA 176

Query: 136 EEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           EE++AM+EA+R E++LKAEETAAK+RATG +PK   GCF
Sbjct: 177 EERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

[Close]

BLAST of CmaCh06G010200.1 vs. TAIR10
Match: AT5G23750.1 (AT5G23750.1 Remorin family protein)

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-43
Identity = 107/175 (61.14%), Postives = 131/175 (74.86%), Query Frame = 1


Query: 2   VAAPENSDSSPASVPPPASVEDKE---KALVPVPVSNKTKEDSVPKKASGGSIDRDIALA 61
           VA  E   + P  +P PA  E+K+   KA+VPV      KE    KK   GS++RD  LA
Sbjct: 33  VAPQEKPVAPPPVLPSPAPAEEKQEDSKAIVPVV----PKEVEEEKKE--GSVNRDAVLA 92

Query: 62  EVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKA 121
            VE EKR S IKAWE++EK K ENKA+KKLS++ +WEN+KKA +EA+LKK+EEQLEKKKA
Sbjct: 93  RVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKA 152

Query: 122 EYGEKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGC 174
           EY E+MKNK+A IHKEAEEK+AM+EA+R EE+LKAEE AAK+RATGT PKK  GC
Sbjct: 153 EYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201

[Close]

BLAST of CmaCh06G010200.1 vs. TAIR10
Match: AT3G48940.1 (AT3G48940.1 Remorin family protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-40
Identity = 102/165 (61.82%), Postives = 124/165 (75.15%), Query Frame = 1


Query: 13  ASVPPPASVEDKE---KALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFI 72
           AS P P S E+K    KA+V V  + +  ED   KK   GS+ RD  L  +E++KR S I
Sbjct: 16  ASEPSPPSKEEKSDDSKAIVLVVAAKEPTED---KKV--GSVHRDAVLVRLEQDKRISLI 75

Query: 73  KAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVA 132
           KAWE++EKSK ENKAQKK+S+V AWENSKKA++EA+LKKIEEQL KKKA Y E+MKNK+A
Sbjct: 76  KAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIA 135

Query: 133 IIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
            IHKEAEEK+AM EA+R E++LKAEE AAK+RATGT P K  G F
Sbjct: 136 QIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175

[Close]

BLAST of CmaCh06G010200.1 vs. TAIR10
Match: AT4G00670.1 (AT4G00670.1 Remorin family protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 49/113 (43.36%), Postives = 79/113 (69.91%), Query Frame = 1


Query: 63  EKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGE 122
           +++   IKAW++ + +K  NK QKKL  +S WE  K   +E++L +I+ +++ KK E  E
Sbjct: 11  DEQSKVIKAWKELKITKVNNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKSE 70

Query: 123 KMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKK-FLGCF 175
           K++N+ A +H +A++KKA V+ +R++E+L AEE AA+F+A G IPKK  L CF
Sbjct: 71  KLRNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123

[Close]

BLAST of CmaCh06G010200.1 vs. NCBI nr
Match: gi|659075279|ref|XP_008438060.1| (PREDICTED: uncharacterized protein At3g61260 [Cucumis melo])

HSP 1 Score: 279.3 bits (713), Expect = 4.7e-72
Identity = 160/183 (87.43%), Postives = 165/183 (90.16%), Query Frame = 1


Query: 1   MVAAPENSDSSPASVPPPASV---------EDKEKALVPVPVSNKTKEDSVPKKASGGSI 60
           MV APENSDS+PA  PPPASV         EDKEKA+V VP+ NKTKED VPKKASGGSI
Sbjct: 1   MVTAPENSDSTPAPTPPPASVPAGVPSEAVEDKEKAMVTVPIVNKTKEDPVPKKASGGSI 60

Query: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEE 120
           DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLS+V AWENSKKANLEAKLKKIEE
Sbjct: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSSVLAWENSKKANLEAKLKKIEE 120

Query: 121 QLEKKKAEYGEKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFL 175
            LEKKKAEYGEKMKNKVA+IHKEAEEKKA VEAQRSEELLKAEETAAKFRATGTIPKKFL
Sbjct: 121 DLEKKKAEYGEKMKNKVALIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 180

[Close]

BLAST of CmaCh06G010200.1 vs. NCBI nr
Match: gi|449432167|ref|XP_004133871.1| (PREDICTED: uncharacterized protein At3g61260-like [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 8.9e-71
Identity = 158/183 (86.34%), Postives = 164/183 (89.62%), Query Frame = 1


Query: 1   MVAAPENSDSSPASVPPPASV---------EDKEKALVPVPVSNKTKEDSVPKKASGGSI 60
           MV APENS S+PA  PPPASV         EDKEKA+V VP+ NKTKED+VPKKASGGSI
Sbjct: 1   MVTAPENSVSTPAPTPPPASVPAGVPSEAVEDKEKAMVTVPIVNKTKEDTVPKKASGGSI 60

Query: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEE 120
           DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLS+V AWENSKKANLEAKLKKIEE
Sbjct: 61  DRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSSVLAWENSKKANLEAKLKKIEE 120

Query: 121 QLEKKKAEYGEKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFL 175
            LEKKKAEYGEKMKNKV +IHKEAEEKKA VEAQRSEELLKAEETAAKFRATGTIPKKFL
Sbjct: 121 DLEKKKAEYGEKMKNKVVLIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFL 180

[Close]

BLAST of CmaCh06G010200.1 vs. NCBI nr
Match: gi|255541538|ref|XP_002511833.1| (PREDICTED: remorin [Ricinus communis])

HSP 1 Score: 210.3 bits (534), Expect = 2.7e-51
Identity = 123/162 (75.93%), Postives = 136/162 (83.95%), Query Frame = 1


Query: 13  ASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAW 72
           A+VP P    D  KAL  V    +   +S PKK SGGS+DRDIALAEVEKEKR SFIKAW
Sbjct: 31  ATVPTPEEKPDDSKALAVV----EKVPESGPKKTSGGSLDRDIALAEVEKEKRNSFIKAW 90

Query: 73  EDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIH 132
           EDSEKSKAENKAQKKLS+V+AWENSKKA LEAKL+KIEEQLEKKKAEY EKMKNKVA++H
Sbjct: 91  EDSEKSKAENKAQKKLSSVTAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVH 150

Query: 133 KEAEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           K+AEEK+AMVEAQR EE+LKAEE AAK+RATG  PKK LGCF
Sbjct: 151 KQAEEKRAMVEAQRGEEVLKAEEMAAKYRATGQTPKKLLGCF 188

[Close]

BLAST of CmaCh06G010200.1 vs. NCBI nr
Match: gi|802695749|ref|XP_012083428.1| (PREDICTED: uncharacterized protein At3g61260-like [Jatropha curcas])

HSP 1 Score: 208.8 bits (530), Expect = 7.8e-51
Identity = 120/160 (75.00%), Postives = 134/160 (83.75%), Query Frame = 1


Query: 15  VPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWED 74
           VPPP    D+ KAL  V    +   +S PKK SGGS+DRDIALAEVEKEKR SFIKAWED
Sbjct: 39  VPPPEEKPDESKALAVV----EKIPESAPKKISGGSLDRDIALAEVEKEKRNSFIKAWED 98

Query: 75  SEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKE 134
           SEKSKAENKAQKK SAV AWENSKKA LEAKL+KIEEQLEKKKAEY EKMKNK+A++HK+
Sbjct: 99  SEKSKAENKAQKKKSAVEAWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKIALVHKQ 158

Query: 135 AEEKKAMVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 175
           AEEK+A+VEAQR EE+LKAEE AAK+RATG  P+K LGCF
Sbjct: 159 AEEKRAIVEAQRGEEMLKAEEMAAKYRATGQTPRKLLGCF 194

[Close]

BLAST of CmaCh06G010200.1 vs. NCBI nr
Match: gi|593265720|ref|XP_007135038.1| (hypothetical protein PHAVU_010G096300g [Phaseolus vulgaris])

HSP 1 Score: 206.1 bits (523), Expect = 5.1e-50
Identity = 124/191 (64.92%), Postives = 144/191 (75.39%), Query Frame = 1


Query: 10  SSPASVPPPASVED-----------KEKALVPVPV---------------SNKTKEDSVP 69
           + PASVP PA+VE            K  A VP PV               S KT  + V 
Sbjct: 8   AEPASVPAPATVEPQLAEALDSASKKATAAVPAPVAAETKALAVVEKEKESEKTPPEPVK 67

Query: 70  KKASGGSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLE 129
           KKA+GGS+DRDIALAE+EKEKRFS +KAWE+SEKSKAENKAQK LSAV+AWENSKKA LE
Sbjct: 68  KKATGGSLDRDIALAEIEKEKRFSNVKAWEESEKSKAENKAQKHLSAVAAWENSKKAALE 127

Query: 130 AKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEAEEKKAMVEAQRSEELLKAEETAAKFRAT 175
           A+L+KIEEQLEKKKAEYGEKMKNK+A++HK+AEEK+A VEA+R EE+L AEE+AAK+RAT
Sbjct: 128 AQLRKIEEQLEKKKAEYGEKMKNKIALVHKQAEEKRATVEAKRGEEILNAEESAAKYRAT 187

The following BLAST results are available for this feature:

BLAST of CmaCh06G010200.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
REMO_ARATH	1.2e-46	65.70	Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1	[more]
REMO_SOLTU	4.5e-46	65.32	Remorin OS=Solanum tuberosum PE=1 SV=1	[more]
Y3126_ARATH	4.5e-46	64.78	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1	[more]

BLAST of CmaCh06G010200.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3M0_CUCSA	6.2e-71	86.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122490 PE=4 SV=1	[more]
B9RDP4_RICCO	1.9e-51	75.93	Remorin, putative OS=Ricinus communis GN=RCOM_1614760 PE=4 SV=1	[more]
A0A067JXN4_JATCU	5.5e-51	75.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14423 PE=4 SV=1	[more]
T2DM60_PHAVU	3.5e-50	64.92	Remorin family protein OS=Phaseolus vulgaris GN=PHAVU_010G096300g PE=2 SV=1	[more]
A0A061DUD4_THECC	1.0e-49	67.63	Remorin family protein OS=Theobroma cacao GN=TCM_005370 PE=4 SV=1	[more]

BLAST of CmaCh06G010200.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45820.1	6.6e-48	65.70	Remorin family protein	[more]
AT3G61260.1	2.5e-47	64.78	Remorin family protein	[more]
AT5G23750.1	2.9e-43	61.14	Remorin family protein	[more]
AT3G48940.1	1.0e-40	61.82	Remorin family protein	[more]
AT4G00670.1	1.2e-17	43.36	Remorin family protein	[more]

BLAST of CmaCh06G010200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075279\|ref\|XP_008438060.1\|	4.7e-72	87.43	PREDICTED: uncharacterized protein At3g61260 [Cucumis melo]	[more]
gi\|449432167\|ref\|XP_004133871.1\|	8.9e-71	86.34	PREDICTED: uncharacterized protein At3g61260-like [Cucumis sativus]	[more]
gi\|255541538\|ref\|XP_002511833.1\|	2.7e-51	75.93	PREDICTED: remorin [Ricinus communis]	[more]
gi\|802695749\|ref\|XP_012083428.1\|	7.8e-51	75.00	PREDICTED: uncharacterized protein At3g61260-like [Jatropha curcas]	[more]
gi\|593265720\|ref\|XP_007135038.1\|	5.1e-50	64.92	hypothetical protein PHAVU_010G096300g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C
IPR005518	Remorin_N

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G010200	CmaCh06G010200	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G010200.1	CmaCh06G010200.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G010200.1.exon.1	CmaCh06G010200.1.exon.1	exon
CmaCh06G010200.1.exon.2	CmaCh06G010200.1.exon.2	exon
CmaCh06G010200.1.exon.3	CmaCh06G010200.1.exon.3	exon
CmaCh06G010200.1.exon.4	CmaCh06G010200.1.exon.4	exon
CmaCh06G010200.1.exon.5	CmaCh06G010200.1.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G010200.1.five_prime_UTR.1	CmaCh06G010200.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G010200.1.CDS.1	CmaCh06G010200.1.CDS.1	CDS
CmaCh06G010200.1.CDS.2	CmaCh06G010200.1.CDS.2	CDS
CmaCh06G010200.1.CDS.3	CmaCh06G010200.1.CDS.3	CDS
CmaCh06G010200.1.CDS.4	CmaCh06G010200.1.CDS.4	CDS
CmaCh06G010200.1.CDS.5	CmaCh06G010200.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G010200.1.three_prime_UTR.1	CmaCh06G010200.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 67..169 score: 7.4
IPR005518	Remorin, N-terminal	PFAM	PF03766	Remorin_N	coord: 12..60 score: 2.
None	No IPR available	unknown	Coil	Coil	coord: 92..126 scor
None	No IPR available	PANTHER	PTHR31775	FAMILY NOT NAMED	coord: 15..174 score: 1.5