CmaCh03G001550.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G001550.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr03 : 1984631 .. 1985500 (+)
Sequence length	774

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGAAACAAATTCTTCGTAATGTTCAAACTCTCTCTCTCTCTCTGATTCTCTATTTGATGTGAAATTATTGTTGATCGTTCGTTAATGGCGGCTCTGAAAATCGCATGTTAGGGTTAAAATGAAGGCAATTCAAATCAAATCAAAAGCAAGAACAAATTGAATAGAGTGAAGGAATTCTGTGAATCGTTGATGGAGAACGGATTCAATTTGTTTGATTGAATTATTAAATCGATGATTGCTTAGGAGTTGTAGTTGTGAGAGCCACACGTGCATTGTTTGTTTGCCTTTATTCTGCGATTATTTATTTTCAAATGCTTTTTTTCTCTGAACTCATCCTTTATGCATTTCTTCTTTACAACCAATCAATGCAAACTATGC

mRNA sequence

ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGAAACAAATTCTTCGGTTAAAATGAAGGCAATTCAAATCAAATCAAAAGCAAGAACAAATTGAATAGAGTGAAGGAATTCTGTGAATCGTTGATGGAGAACGGATTCAATTTGTTTGATTGAATTATTAAATCGATGATTGCTTAGGAGTTGTAGTTGTGAGAGCCACACGTGCATTGTTTGTTTGCCTTTATTCTGCGATTATTTATTTTCAAATGCTTTTTTTCTCTGAACTCATCCTTTATGCATTTCTTCTTTACAACCAATCAATGCAAACTATGC

Coding sequence (CDS)

ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGA

Protein sequence

MPEPQTHENFAQNPPLSPLSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAIEGGGLESIAD

Homology

[Close]

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: A0A0A0L245_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 107/156 (68.59%), Postives = 119/156 (76.28%), Query Frame = 1


Query: 1   MPEPQTHENFAQNPPLSPLSRSSF-PAA-DPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF PAA DPDP D PL+P AVAV       ED DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVL------EDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAI 155
           KK +R V     ++    E+ +EEE+ +ADALLEAI
Sbjct: 121 KKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAI 148

[Close]

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: A0A0V0HAK9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 53/144 (36.81%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ + GD P  PT           ED D++R+PKRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSGDDPSPPTTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+   +   
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLEEEDEDDD 128

Query: 137 DEEQMKEEEVEVADA--LLEAIEG 157
           D+++ K + V   ++  LL +++G
Sbjct: 129 DDDEEKPDVVVEKNSMGLLSSVDG 149

[Close]

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: W9S7C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 1


Query: 19  LSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELTSA 78
           LS  S  + +PD GD    PTA    A     ED D  REPK+R+ CP ALE ++EL   
Sbjct: 15  LSLPSSASENPDSGDVSQTPTA----ADYPVSEDPDSTREPKKRRCCPKALEQVEELLIG 74

Query: 79  SNSS---FAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGD 138
            NS+   F+F+FDTKF   S EITPKFGSFN + S      +  K++    D      G 
Sbjct: 75  PNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEGKDQTQNPTGS 134

Query: 139 EEQMKEE 143
             +  EE
Sbjct: 135 SSETVEE 137

[Close]

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: M1CPV9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11
Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 1


Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ +  D PL  T           ED D++R+PKRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSSDDPLPSTTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+   +   
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLEEEDEDDD 128

Query: 137 DEEQMKEEEVEVADA--LLEAIEG 157
           D+++ K + V   ++  LL +++G
Sbjct: 129 DDDEEKPDVVVEKNSMGLLSSVDG 149

[Close]

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: K4D2Y7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = 1


Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ + GD P  PT           ED D+IR+ KRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSGDDPSPPTTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+   +   
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLEVEDE--- 128

Query: 137 DEEQMKEEEVEVAD-ALLEAIEG 157
           DEE+  +  VE     LL +++G
Sbjct: 129 DEEEKPDVVVEKNSLGLLSSVDG 145

[Close]

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|659111461|ref|XP_008455747.1| (PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 5.3e-41
Identity = 105/157 (66.88%), Postives = 119/157 (75.80%), Query Frame = 1


Query: 1   MPEPQTHENFAQNPPLSPLSRSSF--PAADPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF  PA DPDP D PL+P AVA        +D DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPL------QDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAIE 156
           KKE+R V     +T    E+ +EEE+ +ADALL+AI+
Sbjct: 121 KKEEREVRVEEEETVHKVEEEEEEEIGIADALLKAIK 149

[Close]

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|778694676|ref|XP_011653847.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.5e-40
Identity = 107/156 (68.59%), Postives = 119/156 (76.28%), Query Frame = 1


Query: 1   MPEPQTHENFAQNPPLSPLSRSSF-PAA-DPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF PAA DPDP D PL+P AVAV       ED DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVL------EDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAI 155
           KK +R V     ++    E+ +EEE+ +ADALLEAI
Sbjct: 121 KKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAI 148

[Close]

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|778694679|ref|XP_011653849.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 9.4e-38
Identity = 100/147 (68.03%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 1   MPEPQTHENFAQNPPLSPLSRSSF-PAA-DPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF PAA DPDP D PL+P AVAV       ED DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVL------EDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  +K+
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKK 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVE 146
            + +  V +  S  + +EE+ +EEE E
Sbjct: 121 AEREVRVEEEESVHKVEEEEEEEEEEE 141

[Close]

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|703155556|ref|XP_010111232.1| (hypothetical protein L484_027885 [Morus notabilis])

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 1


Query: 19  LSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELTSA 78
           LS  S  + +PD GD    PTA    A     ED D  REPK+R+ CP ALE ++EL   
Sbjct: 15  LSLPSSASENPDSGDVSQTPTA----ADYPVSEDPDSTREPKKRRCCPKALEQVEELLIG 74

Query: 79  SNSS---FAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGD 138
            NS+   F+F+FDTKF   S EITPKFGSFN + S      +  K++    D      G 
Sbjct: 75  PNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEGKDQTQNPTGS 134

Query: 139 EEQMKEE 143
             +  EE
Sbjct: 135 SSETVEE 137

[Close]

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|970056961|ref|XP_015055124.1| (PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii])

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 1


Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ + GD P  PT           ED D+IR+ KRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSGDDPSPPTTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+       
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLE------- 128

Query: 137 DEEQMKEEEVEVADALLEAIEGGGLESI 163
                 EE+ E  D ++E    G L S+
Sbjct: 129 ------EEDEEKPDVVVEKNSLGLLSSV 140

The following BLAST results are available for this feature:

BLAST of CmaCh03G001550.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G001550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L245_CUCSA	1.1e-40	68.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1	[more]
A0A0V0HAK9_SOLCH	6.2e-12	36.81	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
W9S7C4_9ROSA	3.1e-11	40.94	Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1	[more]
M1CPV9_SOLTU	5.2e-11	36.11	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1	[more]
K4D2Y7_SOLLC	2.0e-10	38.46	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmaCh03G001550.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh03G001550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111461\|ref\|XP_008455747.1\|	5.3e-41	66.88	PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-...	[more]
gi\|778694676\|ref\|XP_011653847.1\|	1.5e-40	68.59	PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus]	[more]
gi\|778694679\|ref\|XP_011653849.1\|	9.4e-38	68.03	PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus]	[more]
gi\|703155556\|ref\|XP_010111232.1\|	4.4e-11	40.94	hypothetical protein L484_027885 [Morus notabilis]	[more]
gi\|970056961\|ref\|XP_015055124.1\|	2.2e-10	37.16	PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G001550	CmaCh03G001550	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G001550.1	CmaCh03G001550.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G001550.1.exon.2	CmaCh03G001550.1.exon.2	exon
CmaCh03G001550.1.exon.1	CmaCh03G001550.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G001550.1.CDS.1	CmaCh03G001550.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G001550.1.three_prime_UTR.1	CmaCh03G001550.1.three_prime_UTR.1	three_prime_UTR
CmaCh03G001550.1.three_prime_UTR.2	CmaCh03G001550.1.three_prime_UTR.2	three_prime_UTR