CmaCh14G010950 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G010950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	TRYPTOPHAN SYNTHASE ALPHA CHAIN family protein
Location	Cma_Chr14 : 7834662 .. 7837806 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTTCAAATCAAATGTCTATGGAAATATGTTACCAGTTCTATGTGGTTCAGTCCTTTAGCCTTTCATTCATGAAACTGAGTTTAACATGTTTCAATTTGTTTTTGGCGGGTCTGGTAATTCCTGAACTATCTTGTCCAGTTTGCCTTTTTTCGTATTACAACCCTATTCTTAAACGTGGCATTGAGAACTTCATGATGACAATTAGAGATGCTGGTGTACGAGGTAATTCCTAAATTTCCAGATTTGATATTTGGAACAATTCCTTGTTTCGTATGGGACGTTTAGTGTACGGGTTCAATGTCTTAAGCATGGAAGTGTAGTGGAGGGTCAAAACTTGTGTTTAGGTGCGGTTTTATAGGAAGCTAAAATTGAGGCAAACATGTGTGTAGGTTTCATGAGCCCAAGTCTAGGAAAACTATGTTTAGGGGTCAAGTTTTAGTAGTCTAGAAATTAGGACCATGAATTTAGGAAAATTGTGTTTGGGGTATATGTTTTAGAAGCTAGAGAATATGAAATGCAATGTGAGTTTTGGTTAGAGTTGTAACAGCCCAAGCTCAAGCCCACCGCTAGCAGATATTGTCCGCTTTGGCCCATTACGTATCGCTCCGTTAGCCTCACAGTTTTAAAACGTGTCTATTAGGGAGAGGTTTCCACACCCTTATTAGGAATTTTTCGTTCCCCTCTCTAACCGATGTGAGGTCTCACAATCCACCCTTCTTGATGGCCCAGCGGCCTCGTTGGCTAGCTCTGATACCATTTGTAACAGCTTAACCTCATCGCTAGTAGATATTTTCTGCTTTGGCCCGTTACGTATCGCTCTTAGCCTCACGGTTTTAAAATGCGTCTGTTAAGGAGAGGTTTCCACACTCTTATAAGGAATGTTTCGTTCCCCTCTCTAACTGATGTGGGATCTTACAAGAGTACTAGTTGATTTAAGGATGGGAAAACAAAGGAAGAGAGAGAAAGAAGGGAAAATGAGGGGTTGGGGTTTGGGGGGACAAAAGGAGCGTTACGTTGAGGAAAGGAGGGAGAAGCGGGGATGGGTAACTATTTATGAAGTTTTGGGCATTCAAGTTTAGGGTCAGGTTACTGGTTGGGTTGCAGCGGCCTGAGCAAGAGGCTTCTACTCAAGCCTGTTCCCGTCAACATGTGTTGGACTTAAACTCATTCTAAGCTCAACCCCCTCTATGAGCAATAAATGGGCAAACACGTTGGAACATTATATGTGTCTATTTCGATTCACCATTAATCATTGAACTATAGTCAATCAGCTACATGATTGTTATTCAAGAGCCTATAATATAACGGTTGAAAAGAATATGTCAATACTCCTAATATTAGGTGGGTAGGGATGTTTGAATTCTTTATAAAATGGGAATATTGCATTTAAAGCTGTACAGAGTATTGCATGAGTTGTTAGTATATTATTACGTGTTGCCAAACAAGCATGACTCAATGGATAAATTATCATCCCAAAGGTCGATGGTTCAACCCCCACCCTAACAATCGTTGAACTTAAAATATATATTTATGTGTTAAGTATAGAATCTTAACTTAGATTTTCTTGGTTTACAAAGTTCTATGGAAAATGTGTAACCTTTCTCAACCTTGGGTTTTCTGAACATGTTTGTGGTCATATTGCACTTTCTTGCAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGCAGTTTTGAGAGAGGAAGCTGTGAACTGGTGATATTTTTTCTCATAATGGTTTTATAGATTTTGTAAATCATTTTCTAGGTTTTTTGGTTTTGATATTTATGTAGTAGGACTTAAACGAGCTTTCATAAAGCAATACTAAACAAAAGGTCCCTTGAGCGCCGAGCCAAGCCTTTTCCGCCCGCTTTCCATCTCGCGTTTCCCTGCTTGAGACCATTTTTTATTAGCCCAGTCATGAACCACCCTGGTTAGAGCCATGGTTAACTACTTTACTTACTTGGGGTTCTTTCTCGTAAGTGGTATACCTACACGCTTCATTGTTTTCCAAGAAGATTAGATCATTAAAAAAAGGAAGTTTGCTGGGGTGTACTTTTTGCTTCATTTCAAAGGATATTTTATCAAGCCAAGAGAGAGATGGGGACTCTCTTCTCTAGACCTCTGGAACATTGCCTAGCGTATGAAACATTCCCTGGTTCTTGATAACTGCTTCATTGGAGTGGTAAAGATTAATTTTATTATAGTTAAATTACAAATTTAGACTTTGACATTTATGTCTATTTGGTCCTCGAACTTTTACAATTACAAATTTAGTCCTTAAACTTCTGAATTTTTTAAAATTCTTGGATCTACTTGACACAAAATCAAAAGTTTACGGTTTCATTAGACATTAAATTGGAATATATATATAAATAGAGAGAGAGAGAGAATAGATGTGACACCCGAGTAAAGGAGGAATACATGAATGAACCGAGACCACATTTGAATGAGAGTGATCCTGATGATAGAATTCTTGAGAAAAATTTAAAAGAATAAAAGTTACTATCTATACGAGCAAGTAGCGGCTCAATCATAGGACCTCAAAGTGAAGCGTGCTTTACTTGAAACAATTCTAGTTGGGTGACCTCCTAGGAATTTTCCTAAGAAGCATGTGAATGAGAACAAAACATGCTTAAAGGACCCGTGTTGGTTTGTGGGAATAGTAGTATTCACTCTTTAAAACGACAAACAGGTAATGTGGTCATGTCGTAGGGGATATAGGGGGAATGCTAGAGCAATAAGGTATCGAATCCATATTTCAAGTCTTTATCTGAATCTTGGGCATAGGGCAATGAATTTTTAAAAATTTTGTATTTTCAAGGACTTATTGGGAGCGGAAATGAGAATAAGCTTTGTTAATCACATGAATGATTAGCTGCTAATGCAGAAAACAGTTGCCTTGAATGCTAGAAATTAATTATATGAATCGATCGTTCAACTATACTAACCTGCATCCTTTTTCTATTGTCTCTAGGAGTAGAACCAACTTAATAAGGAAACTTATAGCCAATCCCTTGACTCATTCTTGTTATATTCACTTTTTCTATAAGATAATCGCTCGTTTAACCTTGAGTTGATTGCTTGTTCTTATTTATTTTATGTTGTTCTTTTACATTGCTAAAGGTACTCTTAA

mRNA sequence

ATGGCATCTTCAAATCAAATGTCTATGGAAATATGTTACCAGTTCTATGTGGTTCAGTCCTTTAGCCTTTCATTCATGAAACTGAGTTTAACATGTTTCAATTTGTTTTTGGCGGGTCTGGTAATTCCTGAACTATCTTGTCCAGTTTGCCTTTTTTCGTATTACAACCCTATTCTTAAACGTGGCATTGAGAACTTCATGATGACAATTAGAGATGCTGGTGTACGAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGCAGTTTTGAGAGAGGAAGCTGTGAACTGGTACTCTTAA

Coding sequence (CDS)

ATGGCATCTTCAAATCAAATGTCTATGGAAATATGTTACCAGTTCTATGTGGTTCAGTCCTTTAGCCTTTCATTCATGAAACTGAGTTTAACATGTTTCAATTTGTTTTTGGCGGGTCTGGTAATTCCTGAACTATCTTGTCCAGTTTGCCTTTTTTCGTATTACAACCCTATTCTTAAACGTGGCATTGAGAACTTCATGATGACAATTAGAGATGCTGGTGTACGAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGCAGTTTTGAGAGAGGAAGCTGTGAACTGGTACTCTTAA

Protein sequence

MASSNQMSMEICYQFYVVQSFSLSFMKLSLTCFNLFLAGLVIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAVNWYS

Homology

[Close]

BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA1_ARATH (Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 31  TCFNLFLAGL--VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEET 90
           T FN  ++ L  VIP+LSCP+ LF+YYNPIL+RG+EN+M  I++AGV GL+VPDVPLEET
Sbjct: 85  TNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTVIKNAGVHGLLVPDVPLEET 144

Query: 91  AVLREEA 96
             LR EA
Sbjct: 145 ETLRNEA 151

[Close]

BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA2_ARATH (Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-17
Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAVN 98
           V+P++SCP+ LF+YYNPILKRG+  FM +IR  GV+GLVVPDVPLEET +LR+EA+N
Sbjct: 135 VVPQISCPISLFTYYNPILKRGLGKFMSSIRAVGVQGLVVPDVPLEETEMLRKEALN 191

[Close]

BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA_TRIEI (Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.4e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEA 96
           V P+L  P+ LF+YYNPIL RG+ENF+  I D G RGLVVPD+PLEE  +L E A
Sbjct: 89  VSPKLRSPIILFTYYNPILYRGVENFLKKIYDVGARGLVVPDLPLEEADILLEPA 143

[Close]

BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA_ACAM1 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 43  PELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAVN 98
           PE+  P+ LF+YYNPI  RG+  F+  I  AGVRGLVVPD+PLEE+  L ++A +
Sbjct: 90  PEIRAPIILFTYYNPIYHRGVAEFLQQIAKAGVRGLVVPDLPLEESENLLQQAAD 144

[Close]

BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA_CYAP8 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEA 96
           V PE+  P+ LF+YYNPI  RG+E F+  ++ AGV+GLVVPD+PLEE   L + A
Sbjct: 88  VSPEIKAPIILFTYYNPIFYRGVEAFLQQVKAAGVQGLVVPDLPLEEAESLLKPA 142

[Close]

BLAST of CmaCh14G010950 vs. TrEMBL
Match: A0A0A0LKV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G225330 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAV 97
           VIPELSCP+ LFSYYNPILKRGI NFM+TI+DAGVRGLVVPDVPLEET +LR+EAV
Sbjct: 135 VIPELSCPIALFSYYNPILKRGIGNFMLTIKDAGVRGLVVPDVPLEETEILRKEAV 190

[Close]

BLAST of CmaCh14G010950 vs. TrEMBL
Match: A0A068TWH9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032664001 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAVNW 99
           VIP LSCP+ LFSYYNPILKRG+E FM+T+RDAG+ GLVVPDVPLEET +LR+EA  +
Sbjct: 96  VIPRLSCPIALFSYYNPILKRGVEKFMITVRDAGIHGLVVPDVPLEETEILRKEATKY 153

[Close]

BLAST of CmaCh14G010950 vs. TrEMBL
Match: A0A0A0LD81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843770 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 31  TCFNLFLAGL--VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEET 90
           T FN  ++ L  VIPELS P+ LF+YYNPILKRG+ENFMM I+D GVRGLVVPDVPLEET
Sbjct: 123 TNFNAIISMLKGVIPELSRPISLFTYYNPILKRGVENFMMIIKDTGVRGLVVPDVPLEET 182

Query: 91  AVLREEAV 97
            VLR+EAV
Sbjct: 183 EVLRKEAV 190

[Close]

BLAST of CmaCh14G010950 vs. TrEMBL
Match: A0A0K9QXB7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137970 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.8e-18
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAVNW 99
           VIPELSCP+ LF+YYNPILKRG+ENFM TI+D GV GLVVPDVPLEET  LR+EA+ +
Sbjct: 136 VIPELSCPIALFTYYNPILKRGVENFMSTIKDIGVHGLVVPDVPLEETEGLRKEALKY 193

[Close]

BLAST of CmaCh14G010950 vs. TrEMBL
Match: Q1ERH3_9MAGN (Tryptophan synthase alpha subunit (Fragment) OS=Magnolia praecocissima GN=MpTSA PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.8e-18
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 31 TCFNLFLAGL--VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEET 90
          T FN  ++ L  V+P+LS P+ LFSYYNPILKRG+ENFM TIRD GV GLVVPDVPLEET
Sbjct: 17 TNFNAIISMLKEVVPQLSSPIALFSYYNPILKRGVENFMATIRDVGVHGLVVPDVPLEET 76

Query: 91 AVLREEAV 97
           +LR+EAV
Sbjct: 77 EILRKEAV 84

[Close]

BLAST of CmaCh14G010950 vs. TAIR10
Match: AT4G02610.1 (AT4G02610.1 Aldolase-type TIM barrel family protein)

HSP 1 Score: 90.5 bits (223), Expect = 6.3e-19
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1


Query: 31  TCFNLFLAGL--VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEET 90
           T FN  ++ L  VIP+LSCP+ LF+YYNPIL+RG+EN+M  I++AGV GL+VPDVPLEET
Sbjct: 85  TNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTVIKNAGVHGLLVPDVPLEET 144

Query: 91  AVLREEA 96
             LR EA
Sbjct: 145 ETLRNEA 151

[Close]

BLAST of CmaCh14G010950 vs. TAIR10
Match: AT3G54640.1 (AT3G54640.1 tryptophan synthase alpha chain)

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-19
Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAVN 98
           V+P++SCP+ LF+YYNPILKRG+  FM +IR  GV+GLVVPDVPLEET +LR+EA+N
Sbjct: 135 VVPQISCPISLFTYYNPILKRGLGKFMSSIRAVGVQGLVVPDVPLEETEMLRKEALN 191

[Close]

BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|449455268|ref|XP_004145375.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAV 97
           VIPELSCP+ LFSYYNPILKRGI NFM+TI+DAGVRGLVVPDVPLEET +LR+EAV
Sbjct: 135 VIPELSCPIALFSYYNPILKRGIGNFMLTIKDAGVRGLVVPDVPLEETEILRKEAV 190

[Close]

BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|778669016|ref|XP_011649182.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X2 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAV 97
           VIPELSCP+ LFSYYNPILKRGI NFM+TI+DAGVRGLVVPDVPLEET +LR+EAV
Sbjct: 96  VIPELSCPIALFSYYNPILKRGIGNFMLTIKDAGVRGLVVPDVPLEETEILRKEAV 151

[Close]

BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|659130730|ref|XP_008465320.1| (PREDICTED: tryptophan synthase alpha chain-like [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-19
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 31  TCFNLFLAGL--VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEET 90
           T FN  ++ L  VIPELSCP+ LF+YYNPILKRG+ENFMM I+D GVRGLVVPDVPLEET
Sbjct: 123 TNFNAIISMLKGVIPELSCPISLFTYYNPILKRGVENFMMIIKDTGVRGLVVPDVPLEET 182

Query: 91  AVLREEAV 97
            VLR+EAV
Sbjct: 183 EVLRKEAV 190

[Close]

BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|659096914|ref|XP_008449353.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X2 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-19
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAV 97
           VIPELSCP+ LFSYYNPILKRGI NFM+TI+DAGV+GLVVPDVPLEET +LR+EAV
Sbjct: 96  VIPELSCPIALFSYYNPILKRGIGNFMLTIKDAGVQGLVVPDVPLEETEILRKEAV 151

[Close]

BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|659096912|ref|XP_008449352.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-19
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 41  VIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAV 97
           VIPELSCP+ LFSYYNPILKRGI NFM+TI+DAGV+GLVVPDVPLEET +LR+EAV
Sbjct: 135 VIPELSCPIALFSYYNPILKRGIGNFMLTIKDAGVQGLVVPDVPLEETEILRKEAV 190

The following BLAST results are available for this feature:

BLAST of CmaCh14G010950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRPA1_ARATH	1.1e-17	64.18	Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2	[more]
TRPA2_ARATH	1.5e-17	68.42	Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 P...	[more]
TRPA_TRIEI	6.4e-13	61.82	Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=t...	[more]
TRPA_ACAM1	2.0e-11	54.55	Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=t...	[more]
TRPA_CYAP8	4.6e-11	54.55	Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3...	[more]

BLAST of CmaCh14G010950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKV4_CUCSA	1.1e-19	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G225330 PE=3 SV=1	[more]
A0A068TWH9_COFCA	2.1e-18	74.14	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032664001 PE=3 SV=1	[more]
A0A0A0LD81_CUCSA	6.0e-18	73.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843770 PE=3 SV=1	[more]
A0A0K9QXB7_SPIOL	7.8e-18	75.86	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137970 PE=3 SV=1	[more]
Q1ERH3_9MAGN	7.8e-18	70.59	Tryptophan synthase alpha subunit (Fragment) OS=Magnolia praecocissima GN=MpTSA ...	[more]

BLAST of CmaCh14G010950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02610.1	6.3e-19	64.18	Aldolase-type TIM barrel family protein	[more]
AT3G54640.1	8.2e-19	68.42	tryptophan synthase alpha chain	[more]

BLAST of CmaCh14G010950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455268\|ref\|XP_004145375.1\|	1.6e-19	85.71	PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis sativus]	[more]
gi\|778669016\|ref\|XP_011649182.1\|	1.6e-19	85.71	PREDICTED: tryptophan synthase alpha chain-like isoform X2 [Cucumis sativus]	[more]
gi\|659130730\|ref\|XP_008465320.1\|	3.5e-19	75.00	PREDICTED: tryptophan synthase alpha chain-like [Cucumis melo]	[more]
gi\|659096914\|ref\|XP_008449353.1\|	4.5e-19	83.93	PREDICTED: tryptophan synthase alpha chain-like isoform X2 [Cucumis melo]	[more]
gi\|659096912\|ref\|XP_008449352.1\|	4.5e-19	83.93	PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002028	Trp_synthase_suA
IPR011060	RibuloseP-bd_barrel
IPR013785	Aldolase_TIM

Vocabulary: **Molecular Function**
Term	Definition
GO:0004834	tryptophan synthase activity
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006568	tryptophan metabolic process
GO:0008152	metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009094	L-phenylalanine biosynthetic process
biological_process	GO:0000162	tryptophan biosynthetic process
biological_process	GO:0006571	tyrosine biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006568	tryptophan metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004834	tryptophan synthase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010950.1	CmaCh14G010950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002028	Tryptophan synthase, alpha chain	PFAM	PF00290	Trp_syntA	coord: 43..95 score: 2.1
IPR011060	Ribulose-phosphate binding barrel	unknown	SSF51366	Ribulose-phoshate binding barrel	coord: 45..95 score: 2.35
IPR013785	Aldolase-type TIM barrel	GENE3D	G3DSA:3.20.20.70		coord: 41..95 score: 8.9
None	No IPR available	PANTHER	PTHR10314	SER/THR DEHYDRATASE, TRP SYNTHASE	coord: 41..97 score: 5.9
None	No IPR available	PANTHER	PTHR10314:SF88	TRYPTOPHAN SYNTHASE ALPHA CHAIN-RELATED	coord: 41..97 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G010950	Cucurbita moschata (Rifu)	cmacmoB246
CmaCh14G010950	Cucurbita moschata (Rifu)	cmacmoB270
CmaCh14G010950	Cucurbita moschata (Rifu)	cmacmoB273
CmaCh14G010950	Wild cucumber (PI 183967)	cmacpiB251
CmaCh14G010950	Wild cucumber (PI 183967)	cmacpiB257
CmaCh14G010950	Cucumber (Chinese Long) v2	cmacuB249
CmaCh14G010950	Cucumber (Chinese Long) v2	cmacuB255
CmaCh14G010950	Melon (DHL92) v3.5.1	cmameB226
CmaCh14G010950	Melon (DHL92) v3.5.1	cmameB232
CmaCh14G010950	Watermelon (Charleston Gray)	cmawcgB221
CmaCh14G010950	Watermelon (Charleston Gray)	cmawcgB224
CmaCh14G010950	Watermelon (97103) v1	cmawmB230
CmaCh14G010950	Watermelon (97103) v1	cmawmB227
CmaCh14G010950	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G010950	Cucurbita pepo (Zucchini)	cmacpeB284
CmaCh14G010950	Cucurbita pepo (Zucchini)	cmacpeB293
CmaCh14G010950	Bottle gourd (USVL1VR-Ls)	cmalsiB240
CmaCh14G010950	Cucumber (Gy14) v2	cgybcmaB320
CmaCh14G010950	Cucumber (Gy14) v2	cgybcmaB316
CmaCh14G010950	Melon (DHL92) v3.6.1	cmamedB257
CmaCh14G010950	Melon (DHL92) v3.6.1	cmamedB264
CmaCh14G010950	Silver-seed gourd	carcmaB0383
CmaCh14G010950	Cucumber (Chinese Long) v3	cmacucB0289
CmaCh14G010950	Cucumber (Chinese Long) v3	cmacucB0293
CmaCh14G010950	Watermelon (97103) v2	cmawmbB248
CmaCh14G010950	Watermelon (97103) v2	cmawmbB251
CmaCh14G010950	Wax gourd	cmawgoB0289
CmaCh14G010950	Wax gourd	cmawgoB0305
CmaCh14G010950	Cucurbita maxima (Rimu)	cmacmaB283
CmaCh14G010950	Cucumber (Gy14) v1	cgycmaB0929