CmaCh14G004660 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G004660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr14 : 2273043 .. 2277097 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTCCGATCGATCCGTCAAGCCATTCAGGTAATTCCTCCACTTTTGGAAGCTCTCTGATTGTGAATCTCTGAAGCCTAAATTCGGCGTTCTCTAAGGTGAGTGTTAGTTGCTTGCAGCCCCAGATAACCAAATTCTGTAGTGATTTTAGATATATCATCTCATTTGGCAACGATTTCAAAGTATCGCAATTGTAAATCATTAAGGTTTCAAGGTCTGCAAGGCACTCTGGCCGTTCGAATAGAATTTGTAGGTTTTTGCACCCTCCAATGGCGAGAAATTGCAGAGAAGTCATGGTTCCAACTCCGTTTTTGTGCAAACGAAGCTCTTTTGTTGTTATCCACAAGTATTTCAGGCTGATCAAATTCCTTATATCATTTGGCAATTCTTGAAGTTCGGAACAAGATTCAAGAATCAAGGTTTGCAGACTTTGTAGATTGCAGATTGAATTCGGCAGCCGCTTGATGTTCTTATTTCCATGCAAGTCGAGGTATCTCAGGCTTGTAAGTGTTCCTATAGCATTTGGAATTTCCTCTATGTTTGCATTGCCTAAATGTAACAATCTTAAGCTGTTGTACTTCGGAATGCACATTCCAGGTAGGGATGCATTAGGTGGCACCATATCTCTTACATGGAAGGCTAGGGATTTTATTTGAGTGACTGGTTTGGTACCTACTAAGCCCTCAGATTGTTCTTGTGCGAGTACGTGTGCAAGTTTTTGGATAAGAGGGTGCAGTTTAAACCAGTAGCCGAGGCCATGTTCTTCAATTTCTTGAACGAAACATCTTGACCATAGCTCCATGAAATACCTCTCACCTATATTTTTCATAGATGCGTGATTCTCTTCAGGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGTAATTGAGCACAATGAAGAAAACAGGGCTTCAGGTGTGAGGGCATTTGATTATAGCATAATCTGAGTATATGTAAAATACCGTCATTTTCTTCCTCTTGTGCCCACAACTTGTCCTTGATATTCTTCCACTCAGCTATTCTAATTTTTGAAGATAGCAAGCTTCCCATACACTTTATTGCCAATGGAACTCCCTTGCATTTCTGCAGAATTTGGTTTTCTATTTCAGTGAATACTTCTCTGTTTACTTCTTGTCTATCTCTGAAAGCATATCTTTTGAATAACTTAGCTGATTTATCCTCTGACAGCCTCTCCAGTTTGAAGCCTGTTGGAACTTCCTGATTCTTATCGTTCGAATTCTGCATCGATTGTTTCTCAAACGCATAGACTATTCTTACTCCTAGAGCATCTGCGGTCTCCTCACTTTGAGTGGTCACTAAGATTTTGCTGTCCTCGTTTCCCATGTCCAATAGTTCCATCAATGCGGATGAATCGTCTAAGTTTGTGGTCGAAAGGTCTTGAATGACGAGCAAAAAAGATGTACCCTTCAGAAGTTGTCGAACCTTTAAATGCAATTGTTTCTTAGACAAGTCATTACAAATTTCTTTACAGGCTACAACACTATATACCTCTTCGATCAATCTCTGTGTATCAAAACCTTCTTTCACACAAACCCAGAATCTTGAAAGATACTGTTCAACTACTACTTTATGATGGTAAAGGAATTTGGCAAGTGTGCTCTTACCTATACCTGCTTCCCCAACTATGAGGAAGAATCCATGACTAGATTTGAAAGTTTGCAGAAGGTCAGCGTACCGATTGTCATGATAATCCGTTGGAGCATCAACTAATGTGTACTGCAATTGCCAACTTGGTTTCATGTGTCTTACTGAAACTTCAGTAGTGCTAAGGAAGGAGTGTGCTGTCTTCATTCTTCCTATGGAATCTGGGTGCTTTTCAGTGAGATGAAATTCATACATTCTGGCTGCAAGTGTATTCAAATGATTGCATAGTCTCTTCATTTTACGAATCAGTTTAGATTTATGTGCAGAAATTGGATCAGAGCACAAGAAAGGGGCTTGTACCTTTTTTCCAGTGCCCCCTTGTTCAAAGAAATCCCATTTGAATTCATCCATGGAGTCCTCAATTTGGTAAAAGATGTTTTGAAGCTCCTTAAGCCAGTTACGTAGATCATGATTCTGTTCTTGTTCTTGCTTCTCTTCAGCATCAAAAAGAATTGATTTAAGGCTCAACATGGTATACTCGATTGTTCGGAAGTTTGAGCAATTTTTTAGCCTACTCAAGATAGTTTCAGCGTGGTTGTAGATGAAATTAGCCATATTCTTATGGAAAATGTTGTTCCTCCTTGCGATTTATTGGGTTGTCCTCAATTGTCTTCTTACTCTTTGAGTCTGCCTGCCTTGTCTCTCTCGGGTGTCTACAGCAGATCTGATTAGTCTCGTGATGAAGAATAGTCTTTTCCGATCTTCCACTAAGAAAATCAGAGCATTGTCACGACAACTCAATTTACCCGATAAACTACTCAAGGCTCATGGTTTAGTAAGAGGGGGAGATTTGCTTTGAATCCGGGATGAATTTCTATAAATGGAGATTGTTGATATATGCACCTAATCCGTGGATTCGTTGCATTTTCATGAAGCAAAATAGCTTCAAACTTAACTCTTAGGGAAATGTATATTCTTCCCGTGCATCCTTGAAGAATAGAATAGGAGCACTCAACTCTCGCCAGGTATAATACTTCTCTTTAGGATTTATGTATTTAAGGAGTTTTGCAACTGTTTGCTTTTTATTCTAAACAAGTGGAGCCCTCATTTCTTCAAATGAACAGAGAATTCTATTCTTGCTGTGTTCGAAACTATCTGGAATAATCCCCTTCTTTCTTAGATGTAATTCCAAACTCAACACTTGGGGAAATGTATAGTCTTTCCCTTTATATTAAAGAACTGTATAGGAGGGGTCTTGGTATTCTTTAAGCTATTCCTTTACAGGTTCTTACAATTTCCCCTCTTACTTCAGAGTTATTTGGTAGAACTAGACCTTCTTTATTGAGAAGAACTAATATGAGCACCCAAAATCCTCTGCTTAGAGTTTGATTATCATGATTTCCATTCATTTTAAGGTTAACCAAATCCTGTTTTTGATTGTTTTGTTTATCTCAATTAGATTTACTCCAAATTAATTGACAAGATTCAAAATTTAGATGAATTTTCGGACTATTTTGTGATATTTGAACGATTGGTTGTGTTTAGGTTGTAGCCACAAAGCCATTAATAAATTTCGTGGATAACTTATGAATTGCGAGCTGATATGAACTTATGAGTGATAGAAGTATTATCATATACTACAGGGTTGTAATTACGCTGCATGCACTCGAACTCTCATAAGAGTCTTTATTGTGGACACATATACTACACGCCATATAATACTATGAACCGCACCATCAAAGGATTGATGATGATTATTTATATATATATAGATTCTGATTCAGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGAGACACTCCGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCAGATCCAGAAGCCGAGCCCGAACCACTGCTTGATCCGCTTCCTGAGCCTCCCCCGCCACCGCCACCGCCACCGCCACCACCATTGGGCTGCTGCACTGCCGCAAGGCTGATGCTGCTGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGGTAAAGCATGGATGGAGAGGCCATGAGGGAATAAGGCTGAAGGGGACGTTTGTTGTTGATATTGGTATTTATAGAGAGTTTTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGAGCGCGCAGATTGCCAAGGAGCCGACAATGTGTCGCCCTTTTGGGCATCGAACACAACACGCAAATGCGTCTTAATAGTTCCCATCAGTGGGGCGCCGGGGGGGCTTAGTGTGATCATCTCTTGTGTCCACTATTTTTTTTTGTTTTTTCTTCCCTTTCAGGCCCTTTTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTGAGTTGTTGTGGAGAAGATGAGGAAAGTGAACTAA

mRNA sequence

ATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTCCGATCGATCCGTCAAGCCATTCAGATATATCATCTCATTTGGCAACGATTTCAAAGTATCGCAATTGTAAATCATTAAGGTTTCAAGGTCTGCAAGGCACTCTGGCCGTTCGAATAGAATTTATTGAATTCGGCAGCCGCTTGATGTTCTTATTTCCATGCAAGTCGAGGTATCTCAGGCTTGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGAGACACTCCGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCAGATCCAGAAGCCGAGCCCGAACCACTGCTTGATCCGCTTCCTGAGCCTCCCCCGCCACCGCCACCGCCACCGCCACCACCATTGGGCTGCTGCACTGCCGCAAGGCTGATGCTGCTGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGAGAGTTTTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGAGCGCGCAGATTGCCAAGGAGCCGACAATGTGTCGCCCTTTTGGGCATCGAACACAACACGCAAATGCGTCTTAATAGTTCCCATCAGTGGGGCGCCGGGGGGGCTTATTGTTGTGGAGAAGATGAGGAAAGTGAACTAA

Coding sequence (CDS)

ATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTCCGATCGATCCGTCAAGCCATTCAGATATATCATCTCATTTGGCAACGATTTCAAAGTATCGCAATTGTAAATCATTAAGGTTTCAAGGTCTGCAAGGCACTCTGGCCGTTCGAATAGAATTTATTGAATTCGGCAGCCGCTTGATGTTCTTATTTCCATGCAAGTCGAGGTATCTCAGGCTTGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGAGACACTCCGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCAGATCCAGAAGCCGAGCCCGAACCACTGCTTGATCCGCTTCCTGAGCCTCCCCCGCCACCGCCACCGCCACCGCCACCACCATTGGGCTGCTGCACTGCCGCAAGGCTGATGCTGCTGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGAGAGTTTTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGAGCGCGCAGATTGCCAAGGAGCCGACAATGTGTCGCCCTTTTGGGCATCGAACACAACACGCAAATGCGTCTTAATAGTTCCCATCAGTGGGGCGCCGGGGGGGCTTATTGTTGTGGAGAAGATGAGGAAAGTGAACTAA

Protein sequence

MGQLMICRFLKVPIDPSSHSDISSHLATISKYRNCKSLRFQGLQGTLAVRIEFIEFGSRLMFLFPCKSRYLRLVNGGAHVPSITESRHLKIICGLGKAFLWFKPIAWGDTPLEPDPLPLPDPDPDPEAEPEPLLDPLPEPPPPPPPPPPPPLGCCTAARLMLLLLLIKKMRKQKRREFWEFVGLGRLAFVERADCQGADNVSPFWASNTTRKCVLIVPISGAPGGLIVVEKMRKVN
Homology
[Close]
BLAST of CmaCh14G004660 vs. TrEMBL
Match: E5GBX5_CUCME (Putative uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.8e-19
Identity = 66/100 (66.00%), Postives = 73/100 (73.00%), Query Frame = 1 

Query: 120 PDPDPDPEAEPEPLLDPLPEPPPPPPPPPPPPLGCCTAARLMLLLLLIKKMRKQKRREFW 179
           PDPDPDPEAEP PLLD LP+  PPPPPPPPPPLG CTAAR   LLL+IKKM+KQK+R+  
Sbjct: 2   PDPDPDPEAEPPPLLDALPD--PPPPPPPPPPLGRCTAAR---LLLIIKKMKKQKQRKSL 61

Query: 180 E---FVG-LGRLAFVERADCQGADNVSPFWASNTTRKCVL 216
           E    VG    LAFVE+ DCQGA NV+ FW    TRK  L
Sbjct: 62  EGEAIVGSFEYLAFVEQYDCQGATNVAGFWTLKATRKFAL 96

[Close]
BLAST of CmaCh14G004660 vs. NCBI nr
Match: gi|307136130|gb|ADN33975.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 66/100 (66.00%), Postives = 73/100 (73.00%), Query Frame = 1 

Query: 120 PDPDPDPEAEPEPLLDPLPEPPPPPPPPPPPPLGCCTAARLMLLLLLIKKMRKQKRREFW 179
           PDPDPDPEAEP PLLD LP+  PPPPPPPPPPLG CTAAR   LLL+IKKM+KQK+R+  
Sbjct: 2   PDPDPDPEAEPPPLLDALPD--PPPPPPPPPPLGRCTAAR---LLLIIKKMKKQKQRKSL 61

Query: 180 E---FVG-LGRLAFVERADCQGADNVSPFWASNTTRKCVL 216
           E    VG    LAFVE+ DCQGA NV+ FW    TRK  L
Sbjct: 62  EGEAIVGSFEYLAFVEQYDCQGATNVAGFWTLKATRKFAL 96

The following BLAST results are available for this feature:
BLAST of CmaCh14G004660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G004660 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBX5_CUCME9.8e-1966.00Putative uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=... [more]
BLAST of CmaCh14G004660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G004660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136130|gb|ADN33975.1|1.4e-1866.00hypothetical protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G004660.1CmaCh14G004660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF101447Formin homology 2 domain (FH2 domain)coord: 141..182
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh14G004660ClCG10G016810Watermelon (Charleston Gray)cmawcgB222
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G004660Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G004660Cucurbita pepo (Zucchini)cmacpeB297
CmaCh14G004660Bottle gourd (USVL1VR-Ls)cmalsiB242
CmaCh14G004660Cucumber (Gy14) v2cgybcmaB306
CmaCh14G004660Cucumber (Gy14) v2cgybcmaB916
CmaCh14G004660Melon (DHL92) v3.6.1cmamedB252
CmaCh14G004660Melon (DHL92) v3.6.1cmamedB260
CmaCh14G004660Silver-seed gourdcarcmaB0202
CmaCh14G004660Silver-seed gourdcarcmaB0343
CmaCh14G004660Cucumber (Chinese Long) v3cmacucB0279
CmaCh14G004660Watermelon (97103) v2cmawmbB249
CmaCh14G004660Wax gourdcmawgoB0293
CmaCh14G004660Wax gourdcmawgoB0359
CmaCh14G004660Cucurbita maxima (Rimu)cmacmaB247
CmaCh14G004660Cucurbita maxima (Rimu)cmacmaB286
CmaCh14G004660Cucumber (Gy14) v1cgycmaB0926
CmaCh14G004660Cucurbita moschata (Rifu)cmacmoB244
CmaCh14G004660Cucurbita moschata (Rifu)cmacmoB272
CmaCh14G004660Wild cucumber (PI 183967)cmacpiB241
CmaCh14G004660Cucumber (Chinese Long) v2cmacuB239
CmaCh14G004660Melon (DHL92) v3.5.1cmameB229
CmaCh14G004660Watermelon (97103) v1cmawmB228