CmaCh12G007830 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G007830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA-directed RNA polymerase subunit alpha
LocationCma_Chr12 : 5242097 .. 5250307 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCCAATATCAATAGTTCCTTTCACCCGTTTGATTACTTGTTCAATGCTGCCACTGCCACCATTATCGTCGCCTTCCTTCTTCTCTGTCTTCGTTTCAATGGGCAACTGTTTTTCATCGATAATTTTAATTACCTGTTCTACTTGTCCGGCCAACAGCTTTTCCTCAACAAGTTTAGTTCCCTGTGCTACTTCAATTGCACTGCCGGAAACAATGGCCTCCTTCTCCTTCTCCGCTTTCGTTTCTTCGGCGACCTATTTTTCAATAGTACCGCCATTGTTTCCGTCCTCCTTCTCCTTCTTCTCACCGTCACAGTTCTTCTCTTTTATCTCCTTTGCTTTCGCTACCTCCGTTGCCACATTCTGAACCTCCGCCACAATGCCATCGCTTCTCTCCTCGGATTCAAACTTCACAACGCCAATAATTTTCTCGCCATCGCTCTTCTTCTCTTCTCGCTTGTCTATTTTTTTCTCCAATTCAATTTTCACAGAGCCATCAATTTTCTCCTCATCGATCATCTTCTCTGTTTTTTTCACAGACGCAGCCTTCACATCTCCACGTCCTTTTATCTCAACAAGTGATCCATCTCCAAACTTCACCGTGCCAGTCACTGACTCGTTCAATTCCGAGAACCAACTTCGACAACCAGTCATATGATTGCTGGCTCTCGTCTCTAGGAACCAAGTGTTGCTTTTCTTCTCAATTTCTTCCGGGACAACCTTCTCTTCATAAAGAGCCATCTCCGTCAACTCTGGTGAACCGAGAGTTCAGACTTCACAAACTTGAGCTGTAAGTAAGGCTGGCTCATCCTCATCACTTTGCTTCTCAACCAAGTGCCCTCACTTTGCTTCTCAACCAAGTGCCCCTAATCCACCCATTTCTTCAATCTATAGTCGGATGCGATATGAAGAAACTTAAGAGGTACCAAGCGAAGAAATTTTTTCACCAAGTATGCCTCTTCAAACTTGTCTCCAAAAGTACGTATTATTAACAACTTCATCAACCTTGCTGCATAATCATCAATAGTCTCGGACTCTTTCATATTCATAATTTCAAACTCAATCTTCAGAGTTTGGATCTTTGCCTCCTTTACACGTTCAACACCGACATGAATAGTTTTTAACGTCTGCCATGCTTCTTTTGCTGTCTCTTTCTCTGCTAACAAAAACAACATCTCCTCAGGGATTGCTTGATAGATAGCTGCTAAGGCCATTTGATCCTTCCTTTCATCAAGACTATCCAGAGACTCAATTGATTCGATTGCGTCCCATACCCCTTGAGCACGCAAATAGACCTTTATCTTCATAGCCCATGCTGAGTAGTTGGTTCTCGATAACGTCAGGTATTGGAGTGATACCAGACCTTCCTTTGTTGCAGACTTCGACGACTCTCCTCTCTCTCCAGTGTTGTTATTATTTCTCGGCATGATCTTTGGCATGTAGCCATGCTCTGATACCAATTGTTAGAAAACACTCATACAACTAAGAGTGGCAATAATTTTAAAATAAACAAAACCAACTTACTCATATTATTTTGCTTGTTACACCGTACATATATAGAAAGAATAGCCACACATTAATAACTACCAATAACTTCCCTTAACCGCTAAAAACTTCCCTTAACTGCTAATAACTTCCCTTAACTGCTAAACTTCCCTTAACTGACATAATTTGAAATACAAACAATAAATACAAATGAATTACGATACAAACAATAAATACAAATGAATTACGGTTAATACAAGATTAAATAAACTAACAGAGACTACGAAACAAAGATTCGAATGATTAGGTGAAGTAGTCTTTTGACTTGCAATATTCTTTTTTGTAGGGATACTAACAGATTTTCTTCCAATAAGGGGATTTAGAATAAGGAATGACAAATATGTAAGGGCCTCTATTCGGCAAATTTGTGCAAAATCTCGCCTGATCCGTAGGCGGAGACAAATTATGTAATGTGTTCCAATATGAGACATAAACAAAGACAAGGAGAATCTTTATCAAAAGAGGACCCCAAAGCCCACCCACGATATACACATAAAAAGAAATGAAAGGATTCGGTATGACATGAAATGGATATATCCATATATCTCTCACTTCAATTTATGAGATGAGAAAAATGGCAACAAAACCCATAGCAAGAATCGCTTCACGTAGAAATGGACATATTAGCTCACAGACAAAGTACGCATAAAATACCAAAGGGAGTTATTCATCTTCAAGCAAGTTTAAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGGAATCCCTTGGTCCTATGCTGGTACTTGTGGATTCAAAGGGCCAAGAAAAGAAGAGGGACACCATTTGCTGCTCAAACTACAGCTGGAAATGCTAGTCGGGCAGTAGCAGATCAAGGTATGCAATGAGCAGTAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGTGTTAAGAGCTATTCGTAGAAGCAAACGGTATACTCATAAGTTTCATACGGGATGTAACCCCTATCAACATTGAAGAGAAATAAAGAATTTCATGATTTGATCACAAAATCTTACTATGGTTCGAGAGTGTGAATGTTTGATTAATCCACCACACCCAAATGGTGGTGAGAGTTCTCTTATTTATAATCATTTACAGAATATAGAAATAAGGTAAATTACAAATAATAAGAAAATAGCGATAAAAGGAAAGAATAATAAATGAATACAATATATTTGCATTTAATAAAAGGGCAAATATGGTAACCCGTAATGTAAGGCAAATATCTAGATATTTGCCTTATAATGAACGGTCAACTATCCTTAACACCCCCCCGCAAACTAAGCGTCGGATTTGAACGAACATGAGTCTTGGATCTGAAAAATTCAAAGAGAGGTCGAGAAATACTCTTTGTGAAGATGTAAGCAACTTGGAGATGAGAGGGTACATATTGTGTGCGAAGTTTGCCAGCGATAACAAGTTCTCGAAGGAAATGATAATCTAGTTCAACATGTTTGGCCCGCTTGTGAGAAACAGAATTAGAGCTAAAAAAAATAGCACTTTTGTTGTCACATAAGAGTAAGGGTTGCTGTGAAATATGGACCTTGAGATCATGTCAAAGATGCGTAACCCAAAGAAGTTCAGCAGCAGTTGTGGAAAGAGCACGATACTCAGATTCACAGTTGGAGCGTGATACAGTAGGTTGCTTTTTGGCACTCCAAGAAATGAGATTGTTACCAAGATAAATAGAATAGCCGGATGTAGAATGACGAGTATCGGGACAACCAGCCCAGTCAGCATCCGAATAAGCGACTAGCGTACTAGGAACAGTGGATGGACGAAAGGTAAGACCAAAGTGGAGTGTTCCTTTGATATAGCGAAGAATACGTTTGACAGCAAGAAAGTGATCTGCAGTAGGGGCATGTAAGAATTGACTGACAGAATTAACAGCATAGGCAATATCTGGACGCGTAATAGTCAAGTACTGAAGGGCGCCAACAAGAGATCTGTAGAGAGTAGGATCACAGAAAGGAGAACCATCAGCAGTCAGGTGTTGAGAAACAACCATGGGAGTGTGAACTGGTTTGCTATCGAGCAACTGAGCACGTGTAAGAATATCTCGAGCATATTTTAACTGACTGATAAAGAGATCATCAGGAGTGGGTGAAGCTTCAAGACCAAGAAAGTAACTAAGAGAACCCAAATCTTTGGTAGCAAACTCAGAATGAAGCTTGCAAGTAAAGCTGTTAATAAGAGATGAGTTGTTGCCGGTAACAATAATGTCATCAACATAAAGAAGCAAATAGATAAGGTTAGATTGCTGATGAAAGACAAAAAGGGACGTGTCAGCGCGACTGCAAGTAAACCCAAGTGTGAGAAGAAATGAGCTAAAACGCTGAAACCAAGCACGAGGAGCTTGCTTTAAGCCATAGAGAGCTTTCTTTAATAGACAAACATGCATAGGAAATCGAGGATCAACATACCCAGGAGGTTATTCCATATGAACACGTTCAATAAACGTTCCATTGAGAAAAACATTCTTGACATCAAGTTGTCGAAGAGGCCATTTATTTGTGACTGTAATAGAAAGCACAACACGGGCAGTGGTAGCTTTGACAACTGGACTGAAAGTGTCAGTGTAGTCAAGACCAGGAACCTGAGTATAACCTTTGGTAACGAGACGAGCCTTGAAACGCTCGACGGATCCATCGGGCAAATATTTAATACGAAACACCCATTTAGAGCCCACGATGTTGGTGTTGGCAGGGCGAGGAACCAAAGTCGAAGTATCATTTTGTTGTAACGCTCGAATTTCTTCATCCATGGCAGCCACCCAAGCAGGATTCTTAGCCGCAGATTTGAATCCTTTTGGCTCAGTGGATGCAAGAAGAGCAGAGAGAAGTCCAGATGAGCCCAACATACCAAGATTTGCTGGATGACGAGTCTTGAATATACCAGCTTTGGCGCGTGTGATCATAGGATGAGTGCTCAAAGAAGAGAAATCAACAGGAGGTTCAATAGAGGTCGAATTAGAAGTCGAGGGTGGCAAAGTGGAACCTGCAAGAGAAGTATCAACCTGCACAGACTCATCTACAAGGTCAGAATAAATATCACACGGGGATGAACTGGATTGAGAAATGTTCGGTGATGAAGTGGTGGGGGGGATGAATCAATATGATGAAGATGTGGTTTCAAGAAATTTGAAATAGGAATAGTGGAAAGAGGTTGGGCTTGGGAGCTAGGGATAGCAGGAAAGTGAGTTTCATCAAATTGAGCATGGCAGGTGATATATAGCTTGGTGGTGGCGGGATCAAGACAGTGGAACCCTTTATGAACAGGACTATAACCCAAAAAAATACAAGGAATGTTGCGGGGAGAAAGCTTGTTAGGCATATAATCACGCAAATAAGGATAAACACGACAACCAAAGGGATGAAAATTGTCATAATGTGGAGTGTAGCCATAAAGGAGTTCAAAGGGTGACTTACCTCCAAGAAGTGGAGTAGGCAACCGGTTGATAATATAAGCTGCAGTGCTGAAGGCGTCAACCCAAAAACGAGGAGAAATATGAGAGTGAACGAGAAGGGCCAAGCCAGTCTCAGTCACATGACAATGTTTTCTCTCAACACGACCATTTTGAGCAGGTGTATATGGACAAGAGAGTTGATGGTGGATGCTAGAATTACGTAAATGAGTTTTGAAACAAGTACTAGTAAATTCGGTACCACCATCGCTTTGAAATACCTTGATACGAGAAGAATATTGATTTTCCACAAATTTTTGAAATTGAAGAAAAATATCAAAAAAATCAGATTTAAATTTTAAAGGGTAAAACCAAGTGAATCGAGAATAATCATCAATAAAAATAGCATAATAAAGAAAACACGAATTTGATTTGACGGGAGAAGGACCCCAAAGATCACAATGAATAAGATCTAACACATGAGACGACCTACGTTCATTGCGGGAATAAGGCAATCGATGACTTTTCGCAAGCTGACAAGTATTACATAATGATGGAGAAGGCAATAAAGACGTAAGAGAAAGATGACATTTTTTATTTAAAAAAGAAATAACAAAATGATTCACATGACCCAGACAAGCATGCCATAAATCATATGAAGCACGTAAAGATTTGCTTTTAAGGGCTGAAATAAAAGTAGAGTTGTCGCGCTCCAGCACATATAGCCCTCCATCTCTTTTACCGGTTGCCACCACCCTTCCTGTTTGATGATTCTGGATAGTAATAAGATTATTAGTAAATGTAACGGAGAGAGGAAAATTAGACGTTAATTTACTTATGGAAAGAAGATTTTTAGTGAGGTGAGGGACAACCAAGACATCTAATAAGTGAATATTTGGAACAGAAGAAAGAGTACCGGTGTGGGTAATGGGTAGGGATGCACCGTTTCCTACGATCACAGAGTTCTTACCCGTGTAATTTTTAGAATGATCCAGAATTAATGGGTCGGCAGTCATATGGGCCGAAGCTCCAGTGTCCAGAAACCAATCAGCAGCATCGGGTCCAGCAATAGAACATGACGTGTTAAAGGCTTCAGCAAGGTGAGCATGAGAAGAATCAGGTCGAACATACCGTTGGTTGTAGCGGTCGGCATAATGGCCCTCTTTGCGGCATATTTGGCAATGAGGTGGTCGACGACCCTGACTTGAGTGGGTTCGTCCTCGATTAGAAGAGTTATTTTTGTGAGAATAAGAACGACCTCGCTGGTTGGTAAAGGAAGCAGGGTGAGTTCCATGGGTGCGACCACGATTAGTGGCTGTGAATGTTGTAGGAGTGGAGCCAGAGGACTCAAGGGAGTGCTGGAAAAACTCAAAACTTTCAGTTTTAGAGACTAGATCTGCAAAACAGGGGATAGGGGTGAGAGCCATCTGAGCAGTAGAAAAAGCTGAAAATTCGGTGCCGAGTCCACGAAGGAACCAGTGCACTTTATCAATGTCCTCGACGGGTCTGCCAATGGCATGAAGTTGGTCACAAATTTTTTTGAAGGCACGGGCATACTCAGCAACAGGTTTTATGCCACGTTTCATCAACTGCAAGTCGTCCTTGAGTCTCAGTTCACGAGTTTTTGACTGATGGCTGAACGTAGTTTCCAACGCAAGCCAAACATCACGTGCAGTAGAGAGACCAACGACAACAGCCATGGCTTCCTCAGTGAGAGAGGAGAGCACGAGACAGAGAAGTCGTTGATCGGCTGCTCTCCATGCCAAATATTTGGGGTTGAATGTTGAGGAGGTTTCTGGTTCAAAGCGAGGTGGTGGAACCATAGTTCCATCGACATAGTCCAGCATGTCTTGACTCTCAAGAAGAGGGAGAAGTTGGTTTTTCCAAAGAAGATAATTGGAGGAAGAAAGTTTGATGGTGATCATATGGATTAGAGTATTGAAAGGAAGAAGATGATAACAAGATTCGGAAGCCATAGAGAAGAAAGAATCAGGGATGTTAAACCGAAAGGGCTCTGATACCATGTGAATGTTTGATTAATCCACCACACCCAAATGGTGGTGAGAGTTCTCTTATTTATAATGATTTACAGAATACATAAATAAGGTAAATTACAATTAATAAGGAAATAGCGATAAAATGAAAGAATAATAAATGAATACAATATATTTGCATTTAATAAAAGGGCAAATATGGTAACCCGTAATGTAAGACAAATATCTAGATATTTTTCTTATAATGAACGGTCAACTATCCTTAACAGAGAGAAAATCAAAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAACATCTTTATTATGGAGGCTTTATTTTGTCTCCACTTATTAAGGGGCTAGTGGATACTATGGGCATTGTGATGCGAAAAGCTTTGCTTGTAGAAATAGAGGGTATCACACGTGTTAAATTAGAAAAAATCTCAATTCAGACTCTACCATAGTTGGTATTCAAGAATCTGTACATGAAATTAGAATGAATTTACAAGAAATTGTATTGATAAGTAATCTCTATGGAACTCGTGATGCATCTATTTGTGTCAAGGGTCCTGCTGGATGGATGCATAACTGCTCCAGACATCATCTTACCACCTTCTGTGGAAATCGGTTGATAATACACAGCATATAGCTAACCTAACGCAGCCAATTCATTTGTGTATTGAATGAAAAATCAAGAGGAATTGCGAATGTCGTGTACAAACGCCAAATCATTTTCAAGACGTATGTTAGAATATTCATGCCTGTTCGAAATGCGAATCTATGAATTCTTATGTAAATGGGAATGAAAAACAAGAGAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCAATGAATTCAGCCTCTCTGATTTTTTTTATTCCTTTTTTACATGGGGGGAAGAAGAAGAAAACTTCTATTTAAAAAAAAAAATAAACAGAAAGTGACTTTACCCCTTTTGACTTTGAAAGAGAAATTGGTTAAACTAAGGAAAAAGAAAAAAGAAATAGCATGAAAATTGATTTTGATTGACCAATCAAAATTGCCTCCTAGGTTCTATAATTGCCAAAAAGGTCCAATATACATACATTATTTGACCATTTTATTGAATAATAGTCAAGACGAACTTATGAAAATGAAACATTTTTACATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTGGCTTGCATTTCAAATCCATTTGAATCTTTTTGA

mRNA sequence

ATGACATCCAATATCAATAGTTCCTTTCACCCGTTTGATTACTTGTTCAATGCTGCCACTGCCACCATTATCGTCGCCTTCCTTCTTCTCTGTCTTCGTTTCAATGGGCAACTGTTTTTCATCGATAATTTTAATTACCTGTTCTACTTGTCCGGCCAACAGCTTTTCCTCAACAAATGTACGGGGTCGGGGAATCCCTTGGTCCTATGCTGGTACTTGTGGATTCAAAGGGCCAAGAAAAGAAGAGGGACACCATTTGCTGCTCAAACTACAGCTGGAAATGCTAGTCGGGCAGTAGCAGATCAAGACTCTACCATAGTTGGTATTCAAGAATCTGTACATGAAATTAGAATGAATTTACAAGAAATTGTATTGATAAGTAATCTCTATGGAACTCGTGATGCATCTATTTGTGTCAAGGGTCCTGCTGGATGGATGCATAACTGCTCCAGACATCATCTTACCACCTTCTGTGGAAATCGCCAATTCATTTGTGTATTGAATGAAAAATCAAGAGGAATTGCGAATGTCGTGTACAAACGCCAAATCATTTTCAAGACTCAAGACGAACTTATGAAAATGAAACATTTTTACATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTGGCTTGCATTTCAAATCCATTTGAATCTTTTTGA

Coding sequence (CDS)

ATGACATCCAATATCAATAGTTCCTTTCACCCGTTTGATTACTTGTTCAATGCTGCCACTGCCACCATTATCGTCGCCTTCCTTCTTCTCTGTCTTCGTTTCAATGGGCAACTGTTTTTCATCGATAATTTTAATTACCTGTTCTACTTGTCCGGCCAACAGCTTTTCCTCAACAAATGTACGGGGTCGGGGAATCCCTTGGTCCTATGCTGGTACTTGTGGATTCAAAGGGCCAAGAAAAGAAGAGGGACACCATTTGCTGCTCAAACTACAGCTGGAAATGCTAGTCGGGCAGTAGCAGATCAAGACTCTACCATAGTTGGTATTCAAGAATCTGTACATGAAATTAGAATGAATTTACAAGAAATTGTATTGATAAGTAATCTCTATGGAACTCGTGATGCATCTATTTGTGTCAAGGGTCCTGCTGGATGGATGCATAACTGCTCCAGACATCATCTTACCACCTTCTGTGGAAATCGCCAATTCATTTGTGTATTGAATGAAAAATCAAGAGGAATTGCGAATGTCGTGTACAAACGCCAAATCATTTTCAAGACTCAAGACGAACTTATGAAAATGAAACATTTTTACATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTGGCTTGCATTTCAAATCCATTTGAATCTTTTTGA

Protein sequence

MTSNINSSFHPFDYLFNAATATIIVAFLLLCLRFNGQLFFIDNFNYLFYLSGQQLFLNKCTGSGNPLVLCWYLWIQRAKKRRGTPFAAQTTAGNASRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGPAGWMHNCSRHHLTTFCGNRQFICVLNEKSRGIANVVYKRQIIFKTQDELMKMKHFYIEDVKHILDILEMEKNLACISNPFESF
Homology
[Close]
BLAST of CmaCh12G007830 vs. Swiss-Prot
Match: RPOA_MORIN (DNA-directed RNA polymerase subunit alpha OS=Morus indica GN=rpoA PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-12
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. Swiss-Prot
Match: RPOA_CUCSA (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-12
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. Swiss-Prot
Match: RPOA_RANMC (DNA-directed RNA polymerase subunit alpha OS=Ranunculus macranthus GN=rpoA PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-12
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGI+ESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. Swiss-Prot
Match: RPOA_CALFG (DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus GN=rpoA PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  V  + STIVGI+ESVHEI MNL+EIVL SNLYGTRDASICV+GP
Sbjct: 67  SEKVPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGP 113

[Close]
BLAST of CmaCh12G007830 vs. Swiss-Prot
Match: RPOA_EUCGG (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus GN=rpoA PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 

Query: 104 STIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           STIVGIQESVHEI MNL+EIVL SNLYGTR+ASICVKGP
Sbjct: 75  STIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. TrEMBL
Match: X2EYM0_LAGSI (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. TrEMBL
Match: X2F216_LAGSI (RNA polymerase alpha subunit (Fragment) OS=Lagenaria siceraria GN=rpoA PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. TrEMBL
Match: X2F000_LAGSI (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. TrEMBL
Match: X2EYD5_LAGSI (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. TrEMBL
Match: X2EY31_LAGSI (RNA polymerase alpha subunit (Fragment) OS=Lagenaria siceraria GN=rpoA PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. TAIR10
Match: ATCG00740.1 (ATCG00740.1 RNA polymerase subunit alpha)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-10
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1 

Query: 104 STIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S I GIQESVHEI MNL EIVL SNLYGTR+A ICV+GP
Sbjct: 75  SNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGP 113

[Close]
BLAST of CmaCh12G007830 vs. NCBI nr
Match: gi|595645355|gb|AHM88816.1| (RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. NCBI nr
Match: gi|595645296|gb|AHM88758.1| (RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. NCBI nr
Match: gi|595645591|gb|AHM89048.1| (RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. NCBI nr
Match: gi|595646493|gb|AHM89935.1| (RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

[Close]
BLAST of CmaCh12G007830 vs. NCBI nr
Match: gi|595646553|gb|AHM89994.1| (RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 

Query: 96  SRAVADQDSTIVGIQESVHEIRMNLQEIVLISNLYGTRDASICVKGP 143
           S  +  + STIVGIQESVHEI MNL+EIVL SNLYGTRDASICVKGP
Sbjct: 67  SEKIPHEYSTIVGIQESVHEIXMNLKEIVLRSNLYGTRDASICVKGP 113

The following BLAST results are available for this feature:
BLAST of CmaCh12G007830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOA_MORIN4.2e-1278.72DNA-directed RNA polymerase subunit alpha OS=Morus indica GN=rpoA PE=3 SV=1[more]
RPOA_CUCSA4.2e-1278.72DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus GN=rpoA PE=3 SV=1[more]
RPOA_RANMC9.3e-1276.60DNA-directed RNA polymerase subunit alpha OS=Ranunculus macranthus GN=rpoA PE=3 ... [more]
RPOA_CALFG1.6e-1176.60DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus G... [more]
RPOA_EUCGG2.7e-1189.74DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus... [more]
BLAST of CmaCh12G007830 vs. TrEMBL
Match NameE-valueIdentityDescription
X2EYM0_LAGSI3.5e-1078.72DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV... [more]
X2F216_LAGSI3.5e-1078.72RNA polymerase alpha subunit (Fragment) OS=Lagenaria siceraria GN=rpoA PE=4 SV=1[more]
X2F000_LAGSI3.5e-1078.72DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV... [more]
X2EYD5_LAGSI3.5e-1078.72DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria GN=rpoA PE=3 SV... [more]
X2EY31_LAGSI3.5e-1078.72RNA polymerase alpha subunit (Fragment) OS=Lagenaria siceraria GN=rpoA PE=4 SV=1[more]
BLAST of CmaCh12G007830 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00740.13.2e-1079.49ATCG00740.1 RNA polymerase subunit alpha[more]
BLAST of CmaCh12G007830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595645355|gb|AHM88816.1|5.1e-1078.72RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria][more]
gi|595645296|gb|AHM88758.1|5.1e-1078.72RNA polymerase alpha subunit, partial (chloroplast) [Lagenaria siceraria][more]
gi|595645591|gb|AHM89048.1|5.1e-1078.72RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria][more]
gi|595646493|gb|AHM89935.1|5.1e-1078.72RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria][more]
gi|595646553|gb|AHM89994.1|5.1e-1078.72RNA polymerase alpha subunit (chloroplast) [Lagenaria siceraria][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011262DNA-dir_RNA_pol_insert
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G007830.1CmaCh12G007830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011262DNA-directed RNA polymerase, insert domainGENE3DG3DSA:2.170.120.12coord: 103..145
score: 9.
IPR011262DNA-directed RNA polymerase, insert domainunknownSSF56553Insert subdomain of RNA polymerase alpha subunitcoord: 99..146
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G007830Cucumber (Chinese Long) v3cmacucB0188
CmaCh12G007830Watermelon (97103) v2cmawmbB161
CmaCh12G007830Wax gourdcmawgoB0220
CmaCh12G007830Cucurbita maxima (Rimu)cmacmaB006
CmaCh12G007830Cucurbita maxima (Rimu)cmacmaB174
CmaCh12G007830Cucumber (Gy14) v1cgycmaB0593
CmaCh12G007830Cucurbita moschata (Rifu)cmacmoB177
CmaCh12G007830Wild cucumber (PI 183967)cmacpiB163
CmaCh12G007830Cucumber (Chinese Long) v2cmacuB163
CmaCh12G007830Watermelon (Charleston Gray)cmawcgB151
CmaCh12G007830Watermelon (97103) v1cmawmB168
CmaCh12G007830Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G007830Bottle gourd (USVL1VR-Ls)cmalsiB168
CmaCh12G007830Cucumber (Gy14) v2cgybcmaB058
CmaCh12G007830Melon (DHL92) v3.6.1cmamedB161