CmaCh11G012090 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAGGGTTAGGTTACCCGATATTGTAATAATCCTTGATCAACAAGAAGAATATCAGGCTCTGAAAGAATGTATCACGCTGGGAATTCCAACTAGTTGTTTAATTGATACAAATGGTGACCCGGATCTCATATTTCGATTCCAGCAAATGATGATGCCTGAAATCCGATTCATTATTCATAAGAAGATCAATCAATTTTGGGGGGAACTCCATAGAGTTAGGGCAGGGAATTGCTTACTATTCCCGAATCGCACAAAAGAGATCAAAAACTAGGGTAGGGATATTGTAATGTAATCAATTGATATCAAAAATAGACAACTCAAGGCAAGGGCAGGCAGTCGAAGGAAGACAGTCAAATCAAATTCCTTTACAATTCTATTTCTTTCAGAGGGAAATATTCATACTCATTCTATTATGTTCTATCAACACACACAAAGAAAGGAAGGGGTTATAAAATATATCCGGTGTGGAAGTCGGCCTTTGTATTGGCAAATAGGAAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACGTCTTCGGTTGTAA ATGACAGGGTTACCCGATATTGTAATAATCCTTGATCAACAAGAAGAATATCAGGCTCTGAAAGAATGTATCACGCTGGGAATTCCAACTAGTTGTTTAATTGATACAAATGGTGACCCGGATCTCATATTTCGATTCCAGCAAATGATGATGCCTGAAATCCGATTCATTATTCATAAGAAGATCAATCAATTTTGGGGGGAACTCCATAGAAAAGGAAGGGGTTATAAAATATATCCGGTGTGGAAGTCGGCCTTTGTATTGGCAAATAGGAAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACGTCTTCGGTTGTAA ATGACAGGGTTACCCGATATTGTAATAATCCTTGATCAACAAGAAGAATATCAGGCTCTGAAAGAATGTATCACGCTGGGAATTCCAACTAGTTGTTTAATTGATACAAATGGTGACCCGGATCTCATATTTCGATTCCAGCAAATGATGATGCCTGAAATCCGATTCATTATTCATAAGAAGATCAATCAATTTTGGGGGGAACTCCATAGAAAAGGAAGGGGTTATAAAATATATCCGGTGTGGAAGTCGGCCTTTGTATTGGCAAATAGGAAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACGTCTTCGGTTGTAA MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLIFRFQQMMMPEIRFIIHKKINQFWGELHRKGRGYKIYPVWKSAFVLANRKEVSKYMPKYLLRLRL
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_NANDO (30S ribosomal protein S2, chloroplastic OS=Nandina domestica GN=rps2 PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.9e-15 Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_CERDE (30S ribosomal protein S2, chloroplastic OS=Ceratophyllum demersum GN=rps2 PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 5.6e-15 Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_CUCSA (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus GN=rps2 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.3e-15 Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_OENAR (30S ribosomal protein S2, chloroplastic OS=Oenothera argillicola GN=rps2 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.3e-15 Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_OENPA (30S ribosomal protein S2, chloroplastic OS=Oenothera parviflora GN=rps2 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.3e-15 Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A0M4BNJ2_9LAMI (30S ribosomal protein S2, chloroplastic OS=Tanaecium tetragonolobum GN=rps2 PE=3 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14 Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 1
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A023T1S9_9ROSI (30S ribosomal protein S2, chloroplastic OS=Licania sprucei GN=rps2 PE=3 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 7.3e-14 Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A0K0LX78_9FABA (Ribosomal protein S2 OS=Lathyrus decaphyllus GN=rps2 PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13 Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A109RUJ7_9ROSI (30S ribosomal protein S2, chloroplastic OS=Viola pedatifida GN=rps2 PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13 Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A0F6T3T8_9ROSI (Ribosomal protein S2 OS=Viola seoulensis GN=rps2 PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13 Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
BLAST of CmaCh11G012090 vs. TAIR10
Match: ATCG00160.1 (ATCG00160.1 ribosomal protein S2) HSP 1 Score: 78.2 bits (191), Expect = 3.5e-15 Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|937408499|ref|YP_009166680.1| (ribosomal protein S2 (chloroplast) [Tanaecium tetragonolobum]) HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14 Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 1
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|630716453|ref|YP_009028291.1| (ribosomal protein S2 (chloroplast) (chloroplast) [Licania sprucei]) HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13 Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|748992472|gb|AJE72894.1| (ribosomal protein S2 (plastid) [Lathyrus decaphyllus]) HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13 Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|984914327|gb|AMC32592.1| (ribosomal protein S2 (chloroplast) [Viola bicolor]) HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13 Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|408901090|gb|AFU95295.1| (Rps2, partial (chloroplast) [Viola pubescens]) HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13 Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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