CmaCh11G012080 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibulose 1,5-bisphosphate carboxylase
LocationCma_Chr11 : 7300674 .. 7301279 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCAAAGATACTGAGATCTTGGCTGGCAGCATTCCGAGTAACTCCTCCACAGGGAGTTCCAAGGAAGCAAGGGCCCTTGTAGCTGCTGAATCTTCTACTGGTACATGGACAATTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGTTATGGAATTATGGAATCGAGCCTCTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAGCTTATCCCCTAGACCCTTTTGAAGAAGGTTCTGTTACTAACATGTTGACTTCCATTGTGGTTAATGTATTTGGATTCAAGGCTCTGCGTGCTCTACGTCTGTTTGCAAATCTCTACTGCTTATATTCAAACTTTCCAAGGCACGCCTCATGGTATCCAGGTTGAAAGAGAGAAATTGAAGAAGTATGGTCACCCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATGGTAGACTCGTTTATGAATGTCTACACGGTGGACTTGATTTTACCAAAGATGATTAAAAGGTTCATTCCCAACCATTTATGCGTTGTAGAGACCATTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTGA

mRNA sequence

ATGAAACCAAAGATACTGAGATCTTGGCTGGCAGCATTCCGAGTAACTCCTCCACAGGGAGTTCCAAGGAAGCAAGGGCCCTTGCTCTGCGTGCTCTACGTCTGTTTGCAAATCTCTACTGCTTATATTCAAACTTTCCAAGGCACGCCTCATGGTATCCAGAGAGAAATTGAAGAAGTATGGTCACCCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATGGTAGACTCGTTTATGAATGTCTACACGGTGGACTTGATTTTACCAAAGATGATTAAAAGGTTCATTCCCAACCATTTATGCGTTGTAGAGACCATTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTGA

Coding sequence (CDS)

ATGAAACCAAAGATACTGAGATCTTGGCTGGCAGCATTCCGAGTAACTCCTCCACAGGGAGTTCCAAGGAAGCAAGGGCCCTTGCTCTGCGTGCTCTACGTCTGTTTGCAAATCTCTACTGCTTATATTCAAACTTTCCAAGGCACGCCTCATGGTATCCAGAGAGAAATTGAAGAAGTATGGTCACCCTCTATTGGGATGTACTATGTAAACCAAAATGGGGATTATCCGCTAAGAATTATGGTAGACTCGTTTATGAATGTCTACACGGTGGACTTGATTTTACCAAAGATGATTAAAAGGTTCATTCCCAACCATTTATGCGTTGTAGAGACCATTTCCTATTTTGTGCGAAATTTCTCAATCACAGGCTGA

Protein sequence

MKPKILRSWLAAFRVTPPQGVPRKQGPLLCVLYVCLQISTAYIQTFQGTPHGIQREIEEVWSPSIGMYYVNQNGDYPLRIMVDSFMNVYTVDLILPKMIKRFIPNHLCVVETISYFVRNFSITG
Homology
[Close]
BLAST of CmaCh11G012080 vs. TrEMBL
Match: Q32196_9ASTE (Ribulose 1,5-bisphosphate carboxylase (Fragment) OS=Eucnide lobata GN=rbcL PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 

Query: 36  LQISTAYIQTFQGTPHGIQREIEEVWSPSIGMYYVNQNGDYPLRIMVDSFMNVYTVDLIL 95
           L+I  AY +TFQG PHGIQ E +  W        +N N  Y L+  V+ FMNV  VDLIL
Sbjct: 136 LRIPPAYTKTFQGPPHGIQVERDPCWD-----VLLNLNWGYLLKTTVEQFMNVSAVDLIL 195

Query: 96  PKMIK 101
           PKM++
Sbjct: 196 PKMMR 195

[Close]
BLAST of CmaCh11G012080 vs. NCBI nr
Match: gi|643621|gb|AAA62117.1| (ribulose 1,5-bisphosphate carboxylase, partial (chloroplast) [Eucnide lobata])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 

Query: 36  LQISTAYIQTFQGTPHGIQREIEEVWSPSIGMYYVNQNGDYPLRIMVDSFMNVYTVDLIL 95
           L+I  AY +TFQG PHGIQ E +  W        +N N  Y L+  V+ FMNV  VDLIL
Sbjct: 136 LRIPPAYTKTFQGPPHGIQVERDPCWD-----VLLNLNWGYLLKTTVEQFMNVSAVDLIL 195

Query: 96  PKMIK 101
           PKM++
Sbjct: 196 PKMMR 195

The following BLAST results are available for this feature:
BLAST of CmaCh11G012080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh11G012080 vs. TrEMBL
Match NameE-valueIdentityDescription
Q32196_9ASTE1.3e-0649.23Ribulose 1,5-bisphosphate carboxylase (Fragment) OS=Eucnide lobata GN=rbcL PE=4 ... [more]
BLAST of CmaCh11G012080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh11G012080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|643621|gb|AAA62117.1|1.9e-0649.23ribulose 1,5-bisphosphate carboxylase, partial (chloroplast) [Eucnide lobata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012080.1CmaCh11G012080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012080Melon (DHL92) v3.6.1cmamedB116
CmaCh11G012080Cucumber (Chinese Long) v3cmacucB0120
CmaCh11G012080Watermelon (97103) v2cmawmbB117
CmaCh11G012080Wax gourdcmawgoB0171
CmaCh11G012080Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012080Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012080Cucumber (Chinese Long) v2cmacuB106
CmaCh11G012080Melon (DHL92) v3.5.1cmameB108
CmaCh11G012080Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012080Watermelon (97103) v1cmawmB101
CmaCh11G012080Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012080Bottle gourd (USVL1VR-Ls)cmalsiB142