CmaCh08G002960 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATCGAAGCTTCAAACTCCCTAAATGGCTCGAGTATTCACTTGCTTATTGTGGAGCTCATGCACTCCAGGTTTGATTTGATTGAATCCTTATTACGACTAAAGCTGAATTTCTCTCGAGAATTCTGAATATCTATTATGTTTTTTAATTTCAGGGTGATCCGATTGATTGGGTGAGTACACACAGATGTCATCATCGATATACTGATTCAGAACGAGACCCACATAGTCCTATATACGGATTTTGGTTTAGTCAAATCACGTGGCTTTTTGATTCATATAATTTGACCAAAAAAGTGTGTCCAAACTATAATACTTCTCAAAAGATTGAAAGAAGCAAGTTTATGTCGTTCATGAAGCATGGATATCCAGACAATGTCAATGACTTGTTGAATGAATCCTTCTATAAGTTCATGCATAGAACATATTTTCTTCATCCACTGGCTCTCTTGGTATTGTTGTATTCTATTGGAGGAGCTCCTTTTATAATATGGGGAATGGTAAATTACTCTCTTTTTTACCTCTTTTTGGAACCCTTTTTACCAAATATTGTTCGTTTATGTTTTTTCTTAACTATTCGTAGTCAGTGAGGTTCGTACTAAGCTTGCACATAACATCTATGGTAAACTCGGTATGCCATGTCTGGGGAAAGCAACCATGGAACACGGGAGACATGTCGAGGAACAATTGGTAAGATACTTCTCTCCTTAGAGCTGCTCGTTAAACTACTGAGCATAAATGTTTGTTTCAATAGAGAATGAAGAATGGAGTGTACAGAGATTTCTTCTCGGTTATCTAAACGGGGTTGAGGACGGAATTATCCCCTACTCTCAAATTCCCGACCCACCTCACTAAAAGGGAGTGGAGAGAGATTTCTTCTCGATTATCTAAACGAGGTTGAGGACAGAAATTATCCCCTACTCTCAAATTCTCGACCCATCTCACTAGAAGGGAGTGGAGAGAGATTTTTTCTCGATTATCTAAACGGGGCTGAGGACGAAAATTATCCCCTACTCTCAAATTTTCGACCCACCTCACTAGAAGGGAGTGAAGAGAGATTTTTTCCTGGTTATCTAAACAAGGCTGAGGATGGGAACTATCCCCTACACTCAAATTCCTGACCCACCTCATTAGAAGAGAGTGGAGAGAGATTAACTCTCGGTTATCTAAACAGGACTGAGGACGAGATGTATCCCCTACTCTCAAATTCCCGACCCACCTAACTAGAAGGGAGTGGAGAGAGATTTCTTCTCGGCTATCTAAACGGGACTGAGGACGGGAACTAGCCCCTACTCTCAAATTCCCAACCCATCCCACTAGAAGGGAGTGGAGAGAGATTTCTTCTCAGTTATCTAAACAGGGCCGAGGACGGGAGTTATCCCCTACCCTGAAATTCCCGACCCACCTCACATATTGATTATTTCAAATGTTTTTTTAGGTTGGTGGCTTTATTTACGTTTGGAGAAGGATGGCATAACAATCACCATGCATTTGAGTACTCAGCAAGGCATGGTCATGAATGGTGGCAGATTGATTTGGGTTGGTATATTATTAAGTTTCTTCAAGTCATTGGATTGGCTACTCATGTCAAATTGCCTTCTGAAAACTACAAGCAAAAGTTGCCTGCTCATTAAGATTACAATGATCCTTAAAGATTTGAGAATGTTTATTGAA CATCGAAGCTTCAAACTCCCTAAATGGCTCGAGTATTCACTTGCTTATTGTGGAGCTCATGCACTCCAGGGTGATCCGATTGATTGGAACATATTTTCTTCATCCACTGGCTCTCTTGGTATTGTTGTATTCTATTGGAGGAGCTCCTTTTATAATATGGGGAATGTCAGTGAGGTTCGTACTAAGCTTGCACATAACATCTATGGTAAACTCGGTATGCCATGTCTGGGGAAAGCAACCATGGAACACGGGAGACATGTCGAGGAACAATTGGTTGGTGGCTTTATTTACGTTTGGAGAAGGATGGCATAACAATCACCATGCATTTGAGTACTCAGCAAGGCATGGTCATGAATGGTGGCAGATTGATTTGGGTTGGTATATTATTAAGTTTCTTCAAGTCATTGGATTGGCTACTCATGTCAAATTGCCTTCTGAAAACTACAAGCAAAAGTTGCCTGCTCATTAAGATTACAATGATCCTTAAAGATTTGAGAATGTTTATTGAA ATGCACTCCAGGGTGATCCGATTGATTGGAACATATTTTCTTCATCCACTGGCTCTCTTGGTATTGTTGTATTCTATTGGAGGAGCTCCTTTTATAATATGGGGAATGTCAGTGAGGTTCGTACTAAGCTTGCACATAACATCTATGGTAAACTCGGTATGCCATGTCTGGGGAAAGCAACCATGGAACACGGGAGACATGTCGAGGAACAATTGGTTGGTGGCTTTATTTACGTTTGGAGAAGGATGGCATAACAATCACCATGCATTTGAGTACTCAGCAAGGCATGGTCATGAATGGTGGCAGATTGATTTGGGTTGGTATATTATTAAGTTTCTTCAAGTCATTGGATTGGCTACTCATGTCAAATTGCCTTCTGAAAACTACAAGCAAAAGTTGCCTGCTCATTAA MHSRVIRLIGTYFLHPLALLVLLYSIGGAPFIIWGMSVRFVLSLHITSMVNSVCHVWGKQPWNTGDMSRNNWLVALFTFGEGWHNNHHAFEYSARHGHEWWQIDLGWYIIKFLQVIGLATHVKLPSENYKQKLPAH
BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ADS3_ARATH (Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=1 SV=2) HSP 1 Score: 203.8 bits (517), Expect = 1.2e-51 Identity = 88/123 (71.54%), Postives = 101/123 (82.11%), Query Frame = 1
BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ICO5D_LIMDO (Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii PE=1 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 3.5e-46 Identity = 82/125 (65.60%), Postives = 95/125 (76.00%), Query Frame = 1
BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ADS32_ARATH (Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3.2 PE=2 SV=3) HSP 1 Score: 169.5 bits (428), Expect = 2.6e-41 Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 1
BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ADS1_ARATH (Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 3.2e-39 Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 1
BLAST of CmaCh08G002960 vs. Swiss-Prot
Match: ADS2_ARATH (Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2) HSP 1 Score: 159.1 bits (401), Expect = 3.5e-38 Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TrEMBL
Match: A0A0A0KAB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G376370 PE=3 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 2.8e-58 Identity = 104/125 (83.20%), Postives = 115/125 (92.00%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TrEMBL
Match: A0A0A0K8P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G377870 PE=3 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 2.8e-58 Identity = 103/125 (82.40%), Postives = 116/125 (92.80%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TrEMBL
Match: B9I0S1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15490g PE=3 SV=2) HSP 1 Score: 206.8 bits (525), Expect = 1.6e-50 Identity = 88/123 (71.54%), Postives = 106/123 (86.18%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TrEMBL
Match: U5FWR1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15500g PE=3 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 1.6e-50 Identity = 88/123 (71.54%), Postives = 106/123 (86.18%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TrEMBL
Match: V4SNN7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025838mg PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 2.8e-50 Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TAIR10
Match: AT3G15850.1 (AT3G15850.1 fatty acid desaturase 5) HSP 1 Score: 203.8 bits (517), Expect = 7.0e-53 Identity = 88/123 (71.54%), Postives = 101/123 (82.11%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TAIR10
Match: AT3G15870.1 (AT3G15870.1 Fatty acid desaturase family protein) HSP 1 Score: 169.5 bits (428), Expect = 1.5e-42 Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TAIR10
Match: AT1G06080.1 (AT1G06080.1 delta 9 desaturase 1) HSP 1 Score: 162.5 bits (410), Expect = 1.8e-40 Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TAIR10
Match: AT2G31360.1 (AT2G31360.1 16:0delta9 desaturase 2) HSP 1 Score: 159.1 bits (401), Expect = 2.0e-39 Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 1
BLAST of CmaCh08G002960 vs. TAIR10
Match: AT1G06350.1 (AT1G06350.1 Fatty acid desaturase family protein) HSP 1 Score: 154.1 bits (388), Expect = 6.3e-38 Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 1
BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|778730379|ref|XP_011659770.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58 Identity = 103/125 (82.40%), Postives = 116/125 (92.80%), Query Frame = 1
BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|778727442|ref|XP_011659261.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58 Identity = 104/125 (83.20%), Postives = 115/125 (92.00%), Query Frame = 1
BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|659100771|ref|XP_008451258.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis melo]) HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58 Identity = 100/120 (83.33%), Postives = 111/120 (92.50%), Query Frame = 1
BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|700189514|gb|KGN44747.1| (hypothetical protein Csa_7G377870 [Cucumis sativus]) HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58 Identity = 103/125 (82.40%), Postives = 116/125 (92.80%), Query Frame = 1
BLAST of CmaCh08G002960 vs. NCBI nr
Match: gi|659100773|ref|XP_008451259.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis melo]) HSP 1 Score: 223.0 bits (567), Expect = 3.1e-55 Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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