CmaCh08G000720 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G000720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr08 : 381537 .. 381908 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACAATAATGGGTTGCTTTTCATGTTTTTCATCTCATGGGAAAGCACCGAAAAAAAGAAAGAATTGTAGAAGGAAACAATCTGTTTCGTTGCATTCTGGCAGTCTTAAACCACAACAACAACATCATTATCCTGCTCCTCCTCCTTCAGGTCATTTTTACTTCTTCTTTTGAATTTTCTTCTTAATTTTCAAATTCGTAAATCGGGTTGTGATAGAGATTGAAAGTCTCGATGAGGATGAGGATGGAGAAGGCTTCCCAATTCGATTCCGCTCATGGAAATTGGACAGGAATAGAGTAATAGAGATTGAAAATCTCGTCAAGGATAGGGATGGAAAAGGCGTCCCAACCCAACCCCATTTGTGGAAATAG

mRNA sequence

ATTACAATAATGGGTTGCTTTTCATGTTTTTCATCTCATGGGAAAGCACCGAAAAAAAGAAAGAATTGTAGAAGGAAACAATCTGTTTCGTTGCATTCTGGCAGTCTTAAACCACAACAACAACATCATTATCCTGCTCCTCCTCCTTCAGAGATTGAAAGTCTCGATGAGGATGAGGATGGAGAAGGCTTCCCAATTCGATTCCGCTCATGGAAATTGGACAGGAATAGAGTAATAGAGATTGAAAATCTCGTCAAGGATAGGGATGGAAAAGGCGTCCCAACCCAACCCCATTTGTGGAAATAG

Coding sequence (CDS)

ATGGGTTGCTTTTCATGTTTTTCATCTCATGGGAAAGCACCGAAAAAAAGAAAGAATTGTAGAAGGAAACAATCTGTTTCGTTGCATTCTGGCAGTCTTAAACCACAACAACAACATCATTATCCTGCTCCTCCTCCTTCAGAGATTGAAAGTCTCGATGAGGATGAGGATGGAGAAGGCTTCCCAATTCGATTCCGCTCATGGAAATTGGACAGGAATAGAGTAATAGAGATTGAAAATCTCGTCAAGGATAGGGATGGAAAAGGCGTCCCAACCCAACCCCATTTGTGGAAATAG

Protein sequence

MGCFSCFSSHGKAPKKRKNCRRKQSVSLHSGSLKPQQQHHYPAPPPSEIESLDEDEDGEGFPIRFRSWKLDRNRVIEIENLVKDRDGKGVPTQPHLWK

Homology

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BLAST of CmaCh08G000720 vs. TrEMBL
Match: A0A0A0K554_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G338620 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-09
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 1  MGCFSCFSSHGKAPKKRKNCRRKQSVSLHSGSLK-------PQQQHHYPAPPPSEIESLD 60
          M CF CFSSHGKA K+ K+ RR+QSVSLHS S K       P QQHH+PAP P+      
Sbjct: 1  MSCFPCFSSHGKATKRAKSGRREQSVSLHSRSGKHQQQHQPPPQQHHHPAPAPAPPPRPT 60

Query: 61 EDEDGEGFPIRFRSWKLDRNRVIEIENLVKDRDGKGVPT 93
            E+ +  P++  + + ++ +  E EN + +++     T
Sbjct: 61 PPENPKANPVQKEAVEKEKEKEKERENEIGEKNNIAAQT 99

[Close]

BLAST of CmaCh08G000720 vs. NCBI nr
Match: gi|778726913|ref|XP_011659181.1| (PREDICTED: serine/threonine-protein kinase At3g07070-like [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-09
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 1  MGCFSCFSSHGKAPKKRKNCRRKQSVSLHSGSLK-------PQQQHHYPAPPPSEIESLD 60
          M CF CFSSHGKA K+ K+ RR+QSVSLHS S K       P QQHH+PAP P+      
Sbjct: 1  MSCFPCFSSHGKATKRAKSGRREQSVSLHSRSGKHQQQHQPPPQQHHHPAPAPAPPPRPT 60

Query: 61 EDEDGEGFPIRFRSWKLDRNRVIEIENLVKDRDGKGVPT 93
            E+ +  P++  + + ++ +  E EN + +++     T
Sbjct: 61 PPENPKANPVQKEAVEKEKEKEKERENEIGEKNNIAAQT 99

The following BLAST results are available for this feature:

BLAST of CmaCh08G000720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G000720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K554_CUCSA	6.5e-09	39.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G338620 PE=3 SV=1	[more]

BLAST of CmaCh08G000720 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh08G000720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726913\|ref\|XP_011659181.1\|	9.3e-09	39.39	PREDICTED: serine/threonine-protein kinase At3g07070-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G000720.1	CmaCh08G000720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G000720	CmoCh08G000710	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G000720	Cp4.1LG17g09850	Cucurbita pepo (Zucchini)	cmacpeB914

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G000720	Cucurbita maxima (Rimu)	cmacmaB378
CmaCh08G000720	Cucurbita maxima (Rimu)	cmacmaB466
CmaCh08G000720	Cucumber (Gy14) v1	cgycmaB0145
CmaCh08G000720	Cucurbita moschata (Rifu)	cmacmoB892
CmaCh08G000720	Wild cucumber (PI 183967)	cmacpiB907
CmaCh08G000720	Wild cucumber (PI 183967)	cmacpiB936
CmaCh08G000720	Cucumber (Chinese Long) v2	cmacuB916
CmaCh08G000720	Watermelon (Charleston Gray)	cmawcgB789
CmaCh08G000720	Watermelon (Charleston Gray)	cmawcgB810
CmaCh08G000720	Watermelon (97103) v1	cmawmB859
CmaCh08G000720	Cucurbita pepo (Zucchini)	cmacpeB899
CmaCh08G000720	Bottle gourd (USVL1VR-Ls)	cmalsiB837
CmaCh08G000720	Bottle gourd (USVL1VR-Ls)	cmalsiB824
CmaCh08G000720	Cucumber (Gy14) v2	cgybcmaB457
CmaCh08G000720	Cucumber (Gy14) v2	cgybcmaB975
CmaCh08G000720	Silver-seed gourd	carcmaB0112
CmaCh08G000720	Silver-seed gourd	carcmaB0592
CmaCh08G000720	Silver-seed gourd	carcmaB1090
CmaCh08G000720	Cucumber (Chinese Long) v3	cmacucB1086
CmaCh08G000720	Watermelon (97103) v2	cmawmbB943
CmaCh08G000720	Wax gourd	cmawgoB1126