CmaCh04G019890 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G019890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH-ubiquinone oxidoreductase chain 1
LocationCma_Chr04 : 11773681 .. 11774409 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCCGTAATTCGAGTGAGATTGTCATGGTGCAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGTAGAAACTAATCGAGCTTTGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCCCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTTCTGGGGTCCCGGGGAGTCATTCTAACTGAAACAAGGGGTGGGTCTTTACCAACTTTCAAATATTCGCGATTTGAGGGAAGCCAAAAAAAACCTCACGAACCAAGGGATTGAGCAGCGCGAAAACCACGATCAGACTCTATCTAATAAGGGCGTATTAGAGTGGCGTTAGCGCCCCCTTCCCCTTACCCCTAAACAAAAAGGTTTTTCAGAAAGTTGTCTATGCCTTTTGAAAACCTGACTAATAATAATAATCAAGGGCAAAATGCGCTCAAACAACCAACCTATCTGACTAATAGGAAGAAAGAAAGAAAGGGCCCTATCTAAGCTCTCTCGTTGTAAAGCTATAGCTAAAAAGCTGGCCTTACCTTCTATGTTTGTTATTAGTAAAGCCTAAAGCCCTTGACTAATAGAAAGAGATTTTCTTGCTTGTTTAGTAAAATCACGCTTTTCATTTTGATAGGAGTAGATGCTTGCAGGGGCAGGGCACTCTTCATTCTTCATTCGAAAC

mRNA sequence

GTCTCCGTAATTCGAGTGAGATTGTCATGGTGCAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGTAGAAACTAATCGAGCTTTGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCCCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTTCTGGGGTCCCGGGGAATGCTTGCAGGGGCAGGGCACTCTTCATTCTTCATTCGAAAC

Coding sequence (CDS)

ATGGTGCAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGTAGAAACTAATCGAGCTTTGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCCCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTTCTGGGGTCCCGGGGAATGCTTGCAGGGGCAGGGCACTCTTCATTCTTCATTCGAAAC

Protein sequence

MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVLGSRGMLAGAGHSSFFIRN
BLAST of CmaCh04G019890 vs. Swiss-Prot
Match: NU1M_CITLA (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-27
Identity = 63/70 (90.00%), Postives = 63/70 (90.00%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEYA DAILNSPLL
Sbjct: 148 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYAWDAILNSPLL 207

Query: 61  AEANVLGSRG 71
           AEANV G  G
Sbjct: 208 AEANVPGXPG 217

BLAST of CmaCh04G019890 vs. Swiss-Prot
Match: NU1M_PETHY (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-19
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEY+      S L 
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYSSMGSALSFLG 231

Query: 61  AEANVLGSRGM 72
             AN++   G+
Sbjct: 232 EYANMILMSGL 242

BLAST of CmaCh04G019890 vs. Swiss-Prot
Match: NU1M_ARATH (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=2 SV=4)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-16
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYA 51
           M QKQIW GIPLFPVLVMFFIS L ETNRA FDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221

BLAST of CmaCh04G019890 vs. Swiss-Prot
Match: NU1M_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana GN=ND1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-16
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYA 51
           M QKQIW GIPLFPVLVMFFIS L ETNRA FDLPEAEAE VAGYNVEY+
Sbjct: 178 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 227

BLAST of CmaCh04G019890 vs. Swiss-Prot
Match: NU1M_WHEAT (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-16
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYA 51
           M QKQIW GIPLFPVLVMFFIS L ETNRA FDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221

BLAST of CmaCh04G019890 vs. TrEMBL
Match: G7KDW1_MEDTR (NADH-quinone oxidoreductase protein OS=Medicago truncatula GN=MTR_5g040110 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-28
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1  MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
          M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 1  MAQKQIWSGIPLFPVLVMFFISRLAETNRASFDLPEAEAESVAGYNVEYARDAILNSPLL 60

Query: 61 AEANVLGSRGML 73
          AEANV GSRG++
Sbjct: 61 AEANVPGSRGLI 72

BLAST of CmaCh04G019890 vs. TrEMBL
Match: R4ITZ7_VICFA (NADH-ubiquinone oxidoreductase chain 1 OS=Vicia faba PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.1e-28
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 46  MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 105

Query: 61  AEANVLGSRGML 73
           AEANV GSRG++
Sbjct: 106 AEANVPGSRGLI 117

BLAST of CmaCh04G019890 vs. TrEMBL
Match: A0A072THI4_MEDTR (NADH-quinone oxidoreductase protein OS=Medicago truncatula GN=MTR_0082s0280 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.1e-28
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 46  MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 105

Query: 61  AEANVLGSRGML 73
           AEANV GSRG++
Sbjct: 106 AEANVPGSRGLI 117

BLAST of CmaCh04G019890 vs. TrEMBL
Match: A0A0U1YJ57_BRANI (NADH-ubiquinone oxidoreductase chain 1 OS=Brassica nigra GN=orf128 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-27
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMF ISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 32  MAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 91

Query: 61  AEANVLGSRGML 73
           AEANV GSRG++
Sbjct: 92  AEANVPGSRGLI 103

BLAST of CmaCh04G019890 vs. TrEMBL
Match: A0A088BG09_ERUSA (NADH-ubiquinone oxidoreductase chain 1 OS=Eruca sativa GN=orf128 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-27
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMF ISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 32  MAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 91

Query: 61  AEANVLGSRGML 73
           AEANV GSRG++
Sbjct: 92  AEANVPGSRGLI 103

BLAST of CmaCh04G019890 vs. TAIR10
Match: ATMG01120.1 (ATMG01120.1 NADH dehydrogenase 1B)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-19
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYA 51
           M QKQIWSGIPLFPVLVMF ISRL ETNRA FDLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

BLAST of CmaCh04G019890 vs. TAIR10
Match: ATMG00516.1 (ATMG00516.1 NADH dehydrogenase 1C)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-19
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYA 51
           M QKQIWSGIPLFPVLVMF ISRL ETNRA FDLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

BLAST of CmaCh04G019890 vs. TAIR10
Match: ATMG01275.1 (ATMG01275.1 NADH dehydrogenase 1A)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-19
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYA 51
           M QKQIWSGIPLFPVLVMF ISRL ETNRA FDLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

BLAST of CmaCh04G019890 vs. NCBI nr
Match: gi|357486887|ref|XP_003613731.1| (NADH-quinone oxidoreductase protein [Medicago truncatula])

HSP 1 Score: 132.1 bits (331), Expect = 4.5e-28
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1  MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
          M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 1  MAQKQIWSGIPLFPVLVMFFISRLAETNRASFDLPEAEAESVAGYNVEYARDAILNSPLL 60

Query: 61 AEANVLGSRGML 73
          AEANV GSRG++
Sbjct: 61 AEANVPGSRGLI 72

BLAST of CmaCh04G019890 vs. NCBI nr
Match: gi|1012265635|ref|XP_015947279.1| (PREDICTED: NADH-ubiquinone oxidoreductase chain 1-like [Arachis duranensis])

HSP 1 Score: 131.7 bits (330), Expect = 5.9e-28
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 46  MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 105

Query: 61  AEANVLGSRGML 73
           AEANV GSRG++
Sbjct: 106 AEANVPGSRGLI 117

BLAST of CmaCh04G019890 vs. NCBI nr
Match: gi|922326899|ref|XP_013442842.1| (NADH-quinone oxidoreductase protein [Medicago truncatula])

HSP 1 Score: 131.7 bits (330), Expect = 5.9e-28
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 46  MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 105

Query: 61  AEANVLGSRGML 73
           AEANV GSRG++
Sbjct: 106 AEANVPGSRGLI 117

BLAST of CmaCh04G019890 vs. NCBI nr
Match: gi|992329707|ref|YP_009228089.1| (hypothetical protein BniMp019 (mitochondrion) [Brassica nigra])

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-27
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMF ISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 32  MAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 91

Query: 61  AEANVLGSRGML 73
           AEANV GSRG++
Sbjct: 92  AEANVPGSRGLI 103

BLAST of CmaCh04G019890 vs. NCBI nr
Match: gi|57013929|ref|YP_173402.1| (hypothetical protein NitaMp056 [Nicotiana tabacum])

HSP 1 Score: 128.6 bits (322), Expect = 5.0e-27
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1

Query: 1   MVQKQIWSGIPLFPVLVMFFISRLVETNRALFDLPEAEAESVAGYNVEYARDAILNSPLL 60
           M QKQIWSGIPLFPVLVMFFISRL ETNRA FDLPEAEAESVAGYNVEYARDAILNS LL
Sbjct: 46  MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLL 105

Query: 61  AEANVLGSRGML 73
           AEANV GSRG++
Sbjct: 106 AEANVPGSRGLI 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NU1M_CITLA2.2e-2790.00NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1[more]
NU1M_PETHY2.9e-1971.83NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1[more]
NU1M_ARATH1.0e-1686.00NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=2 SV=4[more]
NU1M_OENBE1.0e-1686.00NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana GN=ND1 PE=2 SV=1[more]
NU1M_WHEAT1.0e-1686.00NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
G7KDW1_MEDTR3.1e-2891.67NADH-quinone oxidoreductase protein OS=Medicago truncatula GN=MTR_5g040110 PE=3 ... [more]
R4ITZ7_VICFA4.1e-2891.67NADH-ubiquinone oxidoreductase chain 1 OS=Vicia faba PE=3 SV=1[more]
A0A072THI4_MEDTR4.1e-2891.67NADH-quinone oxidoreductase protein OS=Medicago truncatula GN=MTR_0082s0280 PE=3... [more]
A0A0U1YJ57_BRANI2.0e-2790.28NADH-ubiquinone oxidoreductase chain 1 OS=Brassica nigra GN=orf128 PE=3 SV=1[more]
A0A088BG09_ERUSA2.0e-2790.28NADH-ubiquinone oxidoreductase chain 1 OS=Eruca sativa GN=orf128 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATMG01120.11.4e-1990.00ATMG01120.1 NADH dehydrogenase 1B[more]
ATMG00516.11.4e-1990.00ATMG00516.1 NADH dehydrogenase 1C[more]
ATMG01275.11.4e-1990.00ATMG01275.1 NADH dehydrogenase 1A[more]
Match NameE-valueIdentityDescription
gi|357486887|ref|XP_003613731.1|4.5e-2891.67NADH-quinone oxidoreductase protein [Medicago truncatula][more]
gi|1012265635|ref|XP_015947279.1|5.9e-2891.67PREDICTED: NADH-ubiquinone oxidoreductase chain 1-like [Arachis duranensis][more]
gi|922326899|ref|XP_013442842.1|5.9e-2891.67NADH-quinone oxidoreductase protein [Medicago truncatula][more]
gi|992329707|ref|YP_009228089.1|2.9e-2790.28hypothetical protein BniMp019 (mitochondrion) [Brassica nigra][more]
gi|57013929|ref|YP_173402.1|5.0e-2790.28hypothetical protein NitaMp056 [Nicotiana tabacum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001694NADH_UbQ_OxRdtase_su1/FPO
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0070469 respiratory chain
cellular_component GO:0016020 membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019890.1CmaCh04G019890.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPANTHERPTHR11432NADH DEHYDROGENASE SUBUNIT 1coord: 3..50
score: 1.6
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPFAMPF00146NADHdhcoord: 3..50
score: 1.1
NoneNo IPR availablePANTHERPTHR11432:SF3NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1coord: 3..50
score: 1.6

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019890Cucurbita maxima (Rimu)cmacmaB018
CmaCh04G019890Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019890Cucurbita pepo (Zucchini)cmacpeB721