CmaCh04G014320 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G014320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 7305375 .. 7306138 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTCCTAATACATCCGAGGGTCCTTACCCTGTCGGATTTCTTGCATGTGCGTTTGAGCTCTCCTGAACCACAAGCTACCTATAAATTCCAGGAAGATATGTACTTTGGTAGTATGACTTCTAGCAAATTGTTGAAGATCGACACGCAGGGCATGGAGCAGAGCGACCCTGAGTTGGACGACGAGTTCTCGTACGACAGAGTATTTGCAAACAACATTGAAGAGGCTCCAATTAGAGATGCTACAGGTAATCCAATAAATGACTATGACATGACATATAATATCTCAAATGATCTCGAAAATGAGCCCTATGCAAATGGCCTGGTGAGTATAGAAACGCCCAAGACGACCGAGCAGGCCGCTACAGCAGCCATCACAGAAGTAGTAGGGGTTGTAGAGAAAGTTGATGTCTTTGCTTCTCCCATGTCATCAAAATCAGACAAAACCGACGATTTCTTACATGATCTCGGCTCGAAGTTACTGCAAGAAGATGATTTCCCTGATATTATTGATGCAGATCCTGATACAGACTATGAAGGGTGAAAGGTAGTAGCAATCTCAAATCAATTTTGTAGCGATAAGGGTGTTTAGAATTCAAGATTAATTGTTGTTTTCTTGTTCATGTCACCGTAGTTTTAAGCTGATTATCAAGAACGGCCGTGTATATAAAGAGGTGCAAAAGCCTTGGTTTTGACGTTCATTTTTTGGTGAGTTTTCTTTGAGCCATTGTTCATTCCTTAAACCGTGTTCTAAATATTAAA

mRNA sequence

ATGGAGGTCCTAATACATCCGAGGGTCCTTACCCTGTCGGATTTCTTGCATGTGCGTTTGAGCTCTCCTGAACCACAAGCTACCTATAAATTCCAGGAAGATATGTACTTTGGTAGTATGACTTCTAGCAAATTGTTGAAGATCGACACGCAGGGCATGGAGCAGAGCGACCCTGAGTTGGACGACGAGTTCTCGTACGACAGAGTATTTGCAAACAACATTGAAGAGGCTCCAATTAGAGATGCTACAGAAACGCCCAAGACGACCGAGCAGGCCGCTACAGCAGCCATCACAGAAGTAGTAGGGGTTGTAGAGAAAGTTGATGTCTTTGCTTCTCCCATGTCATCAAAATCAGACAAAACCGACGATTTCTTACATGATCTCGGCTCGAAGTTACTGCAAGAAGATGATTTCCCTGATATTATTGATGCAGATCCTGATACAGACTATGAAGGGTGAAAGTTTTAAGCTGATTATCAAGAACGGCCGTGTATATAAAGAGGTGCAAAAGCCTTGGTTTTGACGTTCATTTTTTGGTGAGTTTTCTTTGAGCCATTGTTCATTCCTTAAACCGTGTTCTAAATATTAAA

Coding sequence (CDS)

ATGGAGGTCCTAATACATCCGAGGGTCCTTACCCTGTCGGATTTCTTGCATGTGCGTTTGAGCTCTCCTGAACCACAAGCTACCTATAAATTCCAGGAAGATATGTACTTTGGTAGTATGACTTCTAGCAAATTGTTGAAGATCGACACGCAGGGCATGGAGCAGAGCGACCCTGAGTTGGACGACGAGTTCTCGTACGACAGAGTATTTGCAAACAACATTGAAGAGGCTCCAATTAGAGATGCTACAGAAACGCCCAAGACGACCGAGCAGGCCGCTACAGCAGCCATCACAGAAGTAGTAGGGGTTGTAGAGAAAGTTGATGTCTTTGCTTCTCCCATGTCATCAAAATCAGACAAAACCGACGATTTCTTACATGATCTCGGCTCGAAGTTACTGCAAGAAGATGATTTCCCTGATATTATTGATGCAGATCCTGATACAGACTATGAAGGGTGA

Protein sequence

MEVLIHPRVLTLSDFLHVRLSSPEPQATYKFQEDMYFGSMTSSKLLKIDTQGMEQSDPELDDEFSYDRVFANNIEEAPIRDATETPKTTEQAATAAITEVVGVVEKVDVFASPMSSKSDKTDDFLHDLGSKLLQEDDFPDIIDADPDTDYEG
Homology
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BLAST of CmaCh04G014320 vs. NCBI nr
Match: gi|659091844|ref|XP_008446762.1| (PREDICTED: uncharacterized protein LOC103489393 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 95/169 (56.21%), Postives = 110/169 (65.09%), Query Frame = 1 

Query: 1   MEVLIHPRVLTLSDFLHVRLSSPEPQATYKFQEDMYFGSMTSSKLLKIDTQGMEQSDPEL 60
           MEVLIHPRVL LSDFL +RLSSPEPQA +KFQED+YF S  S KLLK+ TQ MEQ   E 
Sbjct: 629 MEVLIHPRVLPLSDFLPLRLSSPEPQAAFKFQEDLYFNSNDSRKLLKVGTQSMEQRASEA 688

Query: 61  --------DDEFSYDRVFANNIEEAPIRDA---TETPKTTEQAATAAITEVVGVVEKVDV 120
                   ++E +Y    +N+IE  P  +A    E PK TEQ   AAI+E  GVV + DV
Sbjct: 689 LIRDDVLDNNEMTYSP--SNDIENEPSANALANIERPKRTEQTTAAAISE-EGVVAQDDV 748

Query: 121 F-------ASPMSSKSDKTDDFLHDLGSKLLQEDDFPDIIDADPDTDYE 152
                   +SP+SSKS K +DF  D  S LL EDDFPDIIDADPDTDYE
Sbjct: 749 VFANASMNSSPISSKSYKIEDFGRDSSSNLLLEDDFPDIIDADPDTDYE 794

The following BLAST results are available for this feature:
BLAST of CmaCh04G014320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014320 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G014320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091844|ref|XP_008446762.1|1.2e-3156.21PREDICTED: uncharacterized protein LOC103489393 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G014320.1CmaCh04G014320.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G014320Cucsa.282550Cucumber (Gy14) v1cgycmaB0801
CmaCh04G014320MELO3C012354Melon (DHL92) v3.5.1cmameB640
CmaCh04G014320CmoCh18G009500Cucurbita moschata (Rifu)cmacmoB706
CmaCh04G014320Lsi04G001480Bottle gourd (USVL1VR-Ls)cmalsiB669
CmaCh04G014320Cp4.1LG01g14290Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G014320Cp4.1LG09g03660Cucurbita pepo (Zucchini)cmacpeB700
CmaCh04G014320MELO3C012354.2Melon (DHL92) v3.6.1cmamedB726
CmaCh04G014320CsaV3_5G035440Cucumber (Chinese Long) v3cmacucB0885
CmaCh04G014320Bhi07G000639Wax gourdcmawgoB0903
CmaCh04G014320Carg01905Silver-seed gourdcarcmaB1170
CmaCh04G014320Carg18991Silver-seed gourdcarcmaB1457
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G014320CmaCh18G009470Cucurbita maxima (Rimu)cmacmaB402
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G014320Cucurbita pepo (Zucchini)cmacpeB734
CmaCh04G014320Bottle gourd (USVL1VR-Ls)cmalsiB706
CmaCh04G014320Cucumber (Gy14) v2cgybcmaB672
CmaCh04G014320Watermelon (97103) v2cmawmbB758
CmaCh04G014320Cucurbita maxima (Rimu)cmacmaB536
CmaCh04G014320Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G014320Cucurbita moschata (Rifu)cmacmoB740
CmaCh04G014320Wild cucumber (PI 183967)cmacpiB755
CmaCh04G014320Cucumber (Chinese Long) v2cmacuB748
CmaCh04G014320Watermelon (Charleston Gray)cmawcgB655
CmaCh04G014320Watermelon (Charleston Gray)cmawcgB679
CmaCh04G014320Watermelon (97103) v1cmawmB667
CmaCh04G014320Watermelon (97103) v1cmawmB699