CmaCh02G005350 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G005350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RING/U-box superfamily protein
Location	Cma_Chr02 : 2946900 .. 2947568 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAAGCTTCCACGACTATTTGTCCTTCCAATGTTCCATCCGGGGCACTTGCAACGACAGCGTGGGTTCCCACGAGCAACCCATGCAGTTCATGGAACTCCGAGTCGGACATTCGAGCAATCTCATCTCTCGATCCTCTCACCAAATTCTACAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGTGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCGATGTCATCTATGAGCAGATCTCCTCGTTTGCGCAACACATGACCGCCAACGACGTCCATCTCAATTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGACAGAAATTTGATGGGCTGAGGGAGGAAGAGGAGGGGGATTGCAGTGTCTGTTGCGAGGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTCAGATCACCAATTCGTGTCCTCTCTGCAGAACCCGATTGGTACAATAA

mRNA sequence

ATGTCTTTAAGCTTCCACGACTATTTGTCCTTCCAATGTTCCATCCGGGGCACTTGCAACGACAGCGTGGGTTCCCACGAGCAACCCATGCAGTTCATGGAACTCCGAGTCGGACATTCGAGCAATCTCATCTCTCGATCCTCTCACCAAATTCTACAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGTGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCGATGTCATCTATGAGCAGATCTCCTCGTTTGCGCAACACATGACCGCCAACGACGTCCATCTCAATTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGACAGAAATTTGATGGGCTGAGGGAGGAAGAGGAGGGGGATTGCAGTGTCTGTTGCGAGGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTCAGATCACCAATTCGTGTCCTCTCTGCAGAACCCGATTGGTACAATAA

Coding sequence (CDS)

ATGTCTTTAAGCTTCCACGACTATTTGTCCTTCCAATGTTCCATCCGGGGCACTTGCAACGACAGCGTGGGTTCCCACGAGCAACCCATGCAGTTCATGGAACTCCGAGTCGGACATTCGAGCAATCTCATCTCTCGATCCTCTCACCAAATTCTACAACGGAGTCCCTCAACCCCAATGGGCGATGCTCTGTTCTCTTTTATTCTGCGTGACCAGGAACAACCACCCTTCCTCGAAAACTCCTCCGTGCTTCGGTTTCTGTCTTCCTTCAGAATCCCCATCCCCGCCTGCGATGTCATCTATGAGCAGATCTCCTCGTTTGCGCAACACATGACCGCCAACGACGTCCATCTCAATTTCCACATGGTCGTGGATGTGAATGTCAGCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGACAGAAATTTGATGGGCTGAGGGAGGAAGAGGAGGGGGATTGCAGTGTCTGTTGCGAGGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATCCTCAAGTGGCTTCAGATCACCAATTCGTGTCCTCTCTGCAGAACCCGATTGGTACAATAA

Protein sequence

MSLSFHDYLSFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACDVIYEQISSFAQHMTANDVHLNFHMVVDVNVSEMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQITNSCPLCRTRLVQ

Homology

[Close]

BLAST of CmaCh02G005350 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-10
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 142 EEYSPAAMNGAPASAIERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKC 201
           E Y     N  P    E L R K     ++ + +CSVC    +G+ E++++ CGH++HK 
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK-----KQADNECSVCLSKFQGDSEINKLKCGHLFHKT 133

Query: 202 CILKWLQITN-SCPLCRTRLV 222
           C+ KW+   N +CPLCRT LV
Sbjct: 134 CLEKWIDYWNITCPLCRTPLV 149

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BLAST of CmaCh02G005350 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-10
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1


Query: 152 APASAIERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQITN 211
           A  SAIE L R +        E +C+VC E  + E E   +PC H++H  CI+ WL I N
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRN 234

Query: 212 SCPLCRTRL 221
           SCP+CR  L
Sbjct: 235 SCPVCRFEL 243

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BLAST of CmaCh02G005350 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-10
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1


Query: 152 APASAIERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQITN 211
           A  SAIE L R +      + E +C+VC E  +   E   +PC H++H  CI+ WL I N
Sbjct: 191 ASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRN 250

Query: 212 SCPLCRTRL 221
           SCP+CR  L
Sbjct: 251 SCPVCRFEL 259

[Close]

BLAST of CmaCh02G005350 vs. Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.5e-09
Identity = 24/66 (36.36%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 152 APASAIERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQITN 211
           AP   I +++ QK      +EEG+C++C E  K  ++V ++PC H +H+ CI  WL++  
Sbjct: 372 APEDVIAKMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNG 431

Query: 212 SCPLCR 218
           +C +CR
Sbjct: 432 TCAICR 437

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BLAST of CmaCh02G005350 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1


Query: 152 APASAIERLQRQKFD-GLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQIT 211
           A  SAI+ L   K    + + E   C+VC +  +   +V ++PC HV+H+ C+L WL++ 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 212 NSCPLCRTRL 221
           NSCP+CR  L
Sbjct: 251 NSCPVCRFEL 260

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BLAST of CmaCh02G005350 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.2e-52
Identity = 111/216 (51.39%), Postives = 146/216 (67.59%), Query Frame = 1


Query: 10  SFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFIL 69
           SF+CSIR   N S  ++ QP+QF+ELR+GH S L+   SHQILQ++    + D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDQEQPPFLENSSVLRFLSSFRIPIPACDVIYEQISSFAQHMTANDVHLNFHMVVDVNVS 129
           R+ E PPF+ +SS+ RFLSS+ I    CD I+ +ISSFA  + A +++ NFH++  ++  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFDGL-REEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGHVYHKCCILKWLQITNSCPLCRTRL 221
            E+EVSRIPCGH++HK CILKWL+I+NSCPLCR  L
Sbjct: 188 KEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGEL 220

[Close]

BLAST of CmaCh02G005350 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-47
Identity = 110/225 (48.89%), Postives = 143/225 (63.56%), Query Frame = 1


Query: 10  SFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFIL 69
           SFQCSIR     S+ +  QP+QF++LR+ H   L+   S QILQ++  T + D L  F L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDQEQPPFLENSSVLRFLSSFRIPIPACDVIYEQISSFA-QHMTAND--VHLNFHMVVDV 129
            + E PPF+    + RFLSS+ I    CD I+  ISSFA Q + A D  +++NFH++ DV
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 NVSEMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFDGL-REEEEGD--CSVCCEAL 189
           ++    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGHVYHKCCILKWLQITNSCPLCRTRL 221
            G        E+EVSRIPCGH+YHK CILKWL+I+NSCPLCR  L
Sbjct: 188 YGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRREL 229

[Close]

BLAST of CmaCh02G005350 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-30
Identity = 87/218 (39.91%), Postives = 123/218 (56.42%), Query Frame = 1


Query: 9   LSFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFI 68
           LS  C +R     +        Q +E+R+   S L+S  S+Q +Q++  T + +ALF F 
Sbjct: 7   LSLDCCVRSIPTTA------DKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 66

Query: 69  LRDQEQPPFLENSSVLR-FLSSFRIPIPACDVIYEQISSFAQHMTANDVHLNFHMVVDVN 128
           L + E    LEN S+   FL  F  P  +   I+  ISSFA  + A +++LNFH++  V+
Sbjct: 67  LPELE----LENPSLFHDFLLQFLSPADSA-AIFHNISSFALQLAAGNLNLNFHLIATVD 126

Query: 129 VSEMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFDGLREEEE--GDCSVC-----C 188
           +   I ++L+     +YSP   NG PAS +ERL  +K+D     E   G C VC     C
Sbjct: 127 LLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNC 186

Query: 189 EALKGEEEVSRIPCGHVYHKCCILKWLQITNSCPLCRT 219
           E  + +EE +RIPCGHVYHK CILKWL + NSCPLCR+
Sbjct: 187 EREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRS 212

[Close]

BLAST of CmaCh02G005350 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-29
Identity = 99/235 (42.13%), Postives = 126/235 (53.62%), Query Frame = 1


Query: 3   LSFHDYLSFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRS------SHQILQRSP 62
           +SF      QCS  G  N          Q + +R+   S LIS+S         IL+++P
Sbjct: 1   MSFSATSCVQCSFSGYPNTD--------QTLIVRLRFCSRLISQSLAPEIVPDVILEQTP 60

Query: 63  STPMGDALFSFI-LRDQEQPPFLENSSVLRFLSSFRIPIPACDVIYEQISSFAQHMTAND 122
            T +G+ALFS   L+   Q   LE   V  FL SF +    C ++   I SFAQ    N+
Sbjct: 61  FTLIGEALFSLSNLQYPLQQQELEYM-VNEFLRSFNLRSSVCRIVSHNILSFAQQFDINN 120

Query: 123 VHLNFHMVVDVNVSEMIWVDLDPFLV------EEYSPAAMNGAPASAIERLQRQKFDGLR 182
               F +  +V+  +  W +  P L       EE  P    GA  SAIER+++QKFDG R
Sbjct: 121 EC--FKIETNVDYIKEYWTEAAPELYPISTVGEEGLPP--RGASESAIERVKKQKFDGFR 180

Query: 183 EEEE---GDCSVCCEALKGEE-EVSRIPCGHVYHKCCILKWLQITNSCPLCRTRL 221
            EEE   GDCSVCCE +K +  EV RIPCGHVYHK CILKWL+I+NSCPLCR  L
Sbjct: 181 GEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAAL 222

[Close]

BLAST of CmaCh02G005350 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.5e-21
Identity = 64/182 (35.16%), Postives = 96/182 (52.75%), Query Frame = 1


Query: 49  HQILQRSPSTPMGDALFSFILRDQEQPPFLENSSVLRFLSSFRIPIPACDVIYEQISSFA 108
           H++L ++P  P  +ALF   LR  + P F     + + LSS  I   A   +  +I+S  
Sbjct: 45  HEVLHQTPRIPYHNALFYLSLRQLQSPLFY----ITQILSSLNIRPAASQNMARRIASHI 104

Query: 109 QHMTANDVHLNFHMVVDVNVSEMIWVDL---------DPFLVEEYSPAAMNGAPASAIER 168
             M   +   NFH++ +V+   +IW+           +  +++E  PA   G   +  ER
Sbjct: 105 LQMPDRNSETNFHILAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGER 164

Query: 169 LQRQKFDGLREEEEGDCSVCCEALK-GEEEVSRIPCGHVYHKCCILKWLQITNSCPLCRT 221
           L+ ++    + EE GDCS+C + L   + EV RIPCGHVYH+ CI KWL+  NSCPLCR 
Sbjct: 165 LRSEE----KMEELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRK 218

[Close]

BLAST of CmaCh02G005350 vs. TAIR10
Match: AT5G67120.1 (AT5G67120.1 RING/U-box superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-11
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 158 ERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQITNSCPLCR 217
           E L R+K++   ++E   C +C + LK  EEVS++ CGH +H  CI  WL +TN CPLC 
Sbjct: 209 ENLIRRKYEKRSDDETKRCVICQQKLKDNEEVSKLGCGHDFHFGCIKNWLMVTNKCPLCN 268

Query: 218 TRLV 222
             +V
Sbjct: 269 REVV 272

[Close]

BLAST of CmaCh02G005350 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-11
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1


Query: 152 APASAIERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQITN 211
           A  SAIE L R +        E +C+VC E  + E E   +PC H++H  CI+ WL I N
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRN 234

Query: 212 SCPLCRTRL 221
           SCP+CR  L
Sbjct: 235 SCPVCRFEL 243

[Close]

BLAST of CmaCh02G005350 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-11
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 142 EEYSPAAMNGAPASAIERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKC 201
           E Y     N  P    E L R K     ++ + +CSVC    +G+ E++++ CGH++HK 
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK-----KQADNECSVCLSKFQGDSEINKLKCGHLFHKT 133

Query: 202 CILKWLQITN-SCPLCRTRLV 222
           C+ KW+   N +CPLCRT LV
Sbjct: 134 CLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of CmaCh02G005350 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-11
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1


Query: 152 APASAIERLQRQKFDGLREEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQITN 211
           A  SAIE L R +      + E +C+VC E  +   E   +PC H++H  CI+ WL I N
Sbjct: 191 ASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRN 250

Query: 212 SCPLCRTRL 221
           SCP+CR  L
Sbjct: 251 SCPVCRFEL 259

[Close]

BLAST of CmaCh02G005350 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-10
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1


Query: 159 RLQRQKFDGLREEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWLQITNSCPL 218
           R++ ++F  L+ E E  CS+C E+L       +V+R+ C HV+H  C+L+WL+  N+CPL
Sbjct: 141 RMKAEEFKSLKMETE-PCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPL 200

Query: 219 CRTRL 221
           CRT +
Sbjct: 201 CRTEI 204

[Close]

BLAST of CmaCh02G005350 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 3.1e-52
Identity = 111/216 (51.39%), Postives = 146/216 (67.59%), Query Frame = 1


Query: 10  SFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFIL 69
           SF+CSIR   N S  ++ QP+QF+ELR+GH S L+   SHQILQ++    + D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDQEQPPFLENSSVLRFLSSFRIPIPACDVIYEQISSFAQHMTANDVHLNFHMVVDVNVS 129
           R+ E PPF+ +SS+ RFLSS+ I    CD I+ +ISSFA  + A +++ NFH++  ++  
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFDGL-REEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++K+DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGHVYHKCCILKWLQITNSCPLCRTRL 221
            E+EVSRIPCGH++HK CILKWL+I+NSCPLCR  L
Sbjct: 188 KEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGEL 220

[Close]

BLAST of CmaCh02G005350 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 3.0e-47
Identity = 110/225 (48.89%), Postives = 143/225 (63.56%), Query Frame = 1


Query: 10  SFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFIL 69
           SFQCSIR     S+ +  QP+QF++LR+ H   L+   S QILQ++  T + D L  F L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDQEQPPFLENSSVLRFLSSFRIPIPACDVIYEQISSFA-QHMTAND--VHLNFHMVVDV 129
            + E PPF+    + RFLSS+ I    CD I+  ISSFA Q + A D  +++NFH++ DV
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 NVSEMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFDGL-REEEEGD--CSVCCEAL 189
           ++    WVDLDP    E +PA   GA  S IER+ ++K+DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGHVYHKCCILKWLQITNSCPLCRTRL 221
            G        E+EVSRIPCGH+YHK CILKWL+I+NSCPLCR  L
Sbjct: 188 YGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRREL 229

[Close]

BLAST of CmaCh02G005350 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 103/220 (46.82%), Postives = 133/220 (60.45%), Query Frame = 1


Query: 9   LSFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFI 68
           LS +C I  +   +        Q +E+R+   S L+S SS+QI+Q++  TP+ DALF F 
Sbjct: 7   LSLECCIHSSVATTADE-----QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFP 66

Query: 69  LRDQE--QPPFLENSSVLRFLSSFRIPIPA-CDVIYEQISSFAQHMTANDVHLNFHMVVD 128
           L + E   PPF  +  +L+FLS      PA    I+  ISSFA  + A +++LNFH++  
Sbjct: 67  LPELELENPPFFFHDLLLQFLS------PADSTAIFHNISSFALQLAAGNLNLNFHLIAT 126

Query: 129 VNVSEMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFD-GLREEEEGD-CSVCCEAL 188
           V++   I VDLD     +YSP   NGAPAS IERL  +K+D G   EE GD C VC E L
Sbjct: 127 VDLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDL 186

Query: 189 ------KGEEEVSRIPCGHVYHKCCILKWLQITNSCPLCR 218
                 + EEEV+RIPCGHVYHK CILKWL I NSCPLCR
Sbjct: 187 NCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCR 214

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BLAST of CmaCh02G005350 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 8.8e-31
Identity = 106/225 (47.11%), Postives = 128/225 (56.89%), Query Frame = 1


Query: 1   MSLSFHDYLSFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPM 60
           MSLS     SFQCS   T N           F+  R G+SS LI     QILQ++PS  M
Sbjct: 1   MSLSTSS--SFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILM 60

Query: 61  GDALFSFI-LRDQEQPPFLENSSVLRFLSSFRIP--IPACDVIYEQISSFAQHMTANDVH 120
           G+ L  F  L   EQ   +E   V  FL SF +     A   I  +I SFA  +  ++VH
Sbjct: 61  GETLIPFSNLWHPEQQQSIE-FLVNEFLGSFNLHSFASARRTICRKILSFA--LQFHNVH 120

Query: 121 LNFHMVVDVNVSEMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFDGLREEEE-GDC 180
            +F +  +V   E + +    F  E  SP    GAP SAIERL+++KFD L +EEE GDC
Sbjct: 121 GSFKIEANVEHVEDLIIGEQGFQ-ETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDC 180

Query: 181 SVCCEALKGE-EEVSRIPCGHVYHKCCILKWLQITNSCPLCRTRL 221
           SVC E LKG+ +EVSRIPCGHVYHK CIL WLQI NSCPLCR  L
Sbjct: 181 SVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPL 209

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BLAST of CmaCh02G005350 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 87/218 (39.91%), Postives = 123/218 (56.42%), Query Frame = 1


Query: 9   LSFQCSIRGTCNDSVGSHEQPMQFMELRVGHSSNLISRSSHQILQRSPSTPMGDALFSFI 68
           LS  C +R     +        Q +E+R+   S L+S  S+Q +Q++  T + +ALF F 
Sbjct: 7   LSLDCCVRSIPTTA------DKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 66

Query: 69  LRDQEQPPFLENSSVLR-FLSSFRIPIPACDVIYEQISSFAQHMTANDVHLNFHMVVDVN 128
           L + E    LEN S+   FL  F  P  +   I+  ISSFA  + A +++LNFH++  V+
Sbjct: 67  LPELE----LENPSLFHDFLLQFLSPADSA-AIFHNISSFALQLAAGNLNLNFHLIATVD 126

Query: 129 VSEMIWVDLDPFLVEEYSPAAMNGAPASAIERLQRQKFDGLREEEE--GDCSVC-----C 188
           +   I ++L+     +YSP   NG PAS +ERL  +K+D     E   G C VC     C
Sbjct: 127 LLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNC 186

Query: 189 EALKGEEEVSRIPCGHVYHKCCILKWLQITNSCPLCRT 219
           E  + +EE +RIPCGHVYHK CILKWL + NSCPLCR+
Sbjct: 187 EREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRS 212

The following BLAST results are available for this feature:

BLAST of CmaCh02G005350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XERIC_ARATH	2.9e-10	38.27	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RDUF2_ARATH	2.9e-10	43.48	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]
RDUF1_ARATH	8.6e-10	42.03	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1	[more]
YKW3_SCHPO	9.5e-09	36.36	Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (stra...	[more]
RNG1L_ARATH	1.6e-08	38.57	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]

BLAST of CmaCh02G005350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB0_CUCSA	2.2e-52	51.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	2.1e-47	48.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]
A0A0A0LHI3_CUCSA	1.0e-30	39.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1	[more]
A0A0A0LHS2_CUCSA	3.4e-29	42.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1	[more]
A0A0A0K696_CUCSA	7.5e-21	35.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1	[more]

BLAST of CmaCh02G005350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67120.1	1.3e-11	43.75	RING/U-box superfamily protein	[more]
AT5G59550.1	1.7e-11	43.48	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G04240.1	1.7e-11	38.27	RING/U-box superfamily protein	[more]
AT3G46620.1	4.8e-11	42.03	zinc finger (C3HC4-type RING finger) family protein	[more]
AT4G05350.1	5.3e-10	41.54	RING/U-box superfamily protein	[more]

BLAST of CmaCh02G005350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674460\|ref\|XP_011650219.1\|	3.1e-52	51.39	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]
gi\|700199693\|gb\|KGN54851.1\|	3.0e-47	48.89	hypothetical protein Csa_4G551140 [Cucumis sativus]	[more]
gi\|659132530\|ref\|XP_008466247.1\|	1.7e-37	46.82	PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo]	[more]
gi\|659121671\|ref\|XP_008460768.1\|	8.8e-31	47.11	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
gi\|778689036\|ref\|XP_011652885.1\|	1.5e-30	39.91	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G005350.1	CmaCh02G005350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 175..217 score: 7.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 176..216 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 176..217 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 171..221 score: 6.7
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 149..220 score: 8.9
None	No IPR available	PANTHER	PTHR22763:SF46	PROTEIN SAN1	coord: 149..220 score: 8.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 156..220 score: 6.63

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G005350	Cucumber (Chinese Long) v3	cmacucB0697
CmaCh02G005350	Cucumber (Chinese Long) v3	cmacucB0748
CmaCh02G005350	Watermelon (97103) v2	cmawmbB621
CmaCh02G005350	Wax gourd	cmawgoB0768
CmaCh02G005350	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh02G005350	Cucumber (Gy14) v1	cgycmaB0228
CmaCh02G005350	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G005350	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G005350	Wild cucumber (PI 183967)	cmacpiB587
CmaCh02G005350	Wild cucumber (PI 183967)	cmacpiB631
CmaCh02G005350	Cucumber (Chinese Long) v2	cmacuB582
CmaCh02G005350	Cucumber (Chinese Long) v2	cmacuB626
CmaCh02G005350	Melon (DHL92) v3.5.1	cmameB584
CmaCh02G005350	Watermelon (Charleston Gray)	cmawcgB520
CmaCh02G005350	Watermelon (Charleston Gray)	cmawcgB533
CmaCh02G005350	Watermelon (97103) v1	cmawmB570
CmaCh02G005350	Watermelon (97103) v1	cmawmB587
CmaCh02G005350	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G005350	Bottle gourd (USVL1VR-Ls)	cmalsiB546
CmaCh02G005350	Bottle gourd (USVL1VR-Ls)	cmalsiB567
CmaCh02G005350	Cucumber (Gy14) v2	cgybcmaB225
CmaCh02G005350	Cucumber (Gy14) v2	cgybcmaB816
CmaCh02G005350	Silver-seed gourd	carcmaB1466