CmaCh01G015200 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G015200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cysteine--tRNA ligase
Location	Cma_Chr01 : 10645423 .. 10647752 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAATCTCTGGGGAACTTTTTCACCATTCGGCAGGTAGACTCAAATCTTTCATTCAGACTTCCCCTTTTCCTTCTTTTATTTTTCTCATCTTTTTAAACATTATGGAAATCCATTGCAGGATCTGATTTTTGTTGTTTCATTTTGTTACAAGAATCGGTTTCCAATGTTAGTACTTCAATTTCCAGGTGATAGATCTTTACCATCCACTGGCTTTGAGGCTTTTCTTATTGGGGACACACTATCGTTCTCCAATCAACTACTCTGATTTCCTGCTTGAAAGTGCTTCAGATCGTATTTTTTACATCTATCAGGTACGATAACATACAATTTTTTAGTTTAATCATCTTTGACGCAACTCGATTACTCTCATAGGGTTGTAGCATAGAATTTTCATCGTGAGAAATTATATTTATACAGCCGTTGCAACTGTTATCATCAGACACTTGCAAGAACAAGCGTAGGCTGTGTCACAATCGTACTTTTCTTGGCAACGGACTTTGCGATTGTGCGGATCTCACTCCCAACACCGAGTGAGTTAAGCCAACTTGGATTTGCATCGCCTACGGCCAGACAACGTATGCTCCTCTGGCCCCGTTTGAGAAGAAGGTTTTAGAAAGCGGGGGCAGAGAGATTTTCGAAAGCGAGTTTGAAAGTAAGAATGAGAGAAGATTTGAAAGCAACGTTATATAACTATAGCAAAAGGAAACACAACGGCTTAAATAACATATAACTTTCTGGGTAGGGAGATTTTGACAACTATTCGCATCCCCCTATAGTACATTTTGAGGTGATTTAGGTCTGGCAAGCCTAGACGTGATTCACCGAACAGTCATACAAAATCAAGCGGAGGAGTTGACAACTAGTCACACCCCTCTAATAGTACATTTTGAGGCAATTCAAGTCTGACATGCCTAGACATGATTTCGCCGAGTAGTCGTACAAAATACAATAGTAAGATAATACGACATAAAATTAAATAAAGAGTTCAGCGTGGCATGGGCAACACGCCCTAGACAAGCATGACCGTGACACTATGCACATGAAAACATCATGATGTTTCAATATGTACAAATATCCTCGCATAAATTTAATCTGTTCGACCCACCCTTTTGTTCTTGTATCATAATATAAAATGCTCAGTGTCTTAATTCAGTTTCACTGAATTTGAATGGTTGCAGACTCTTGATGACTGTAAAACTGTTATTAGCCAGCAAGATGAATCAAGTCTTAAGGGTTCCATTCCCCCAAGTTTGATGGAAGAGATCAACAAATTCTACAATGTTTTCCTGACCTCGATGTCCGATGACATTCACACTAATGTGGTTTTGGCAGCGTTATCAGATCCTTTGAAAATTATCAATGATTTGTTACATACTCGTAAGGTATTTGATACAAGTGTAGCTTGATTCATTCTGATACAGTCCATCTTTATCTGTTTGAGTTTTTAGTATAGACATGCTTATCTTAGGCTTCAGTGAATGTAATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATCTATAAGGGTGTGTAAACCTTCCCCTAACAGACGCGTTTTAAAGCTTTGAGGGAAAGCCTAAAAGGGAAAGCCCAAAGAGGACAATATCAACTAGCGGTAGATCTGGGTCGTTGTAAGATCATTGTCTTCTACTAATGAGATTTGTCTAAAAGATTTTTTCGAGATTATGTATTAGTTTAAGATTGAACCGGAAAGATAAAATGATGTTTTTGTTCGAGTCAATGAAGTAGTGTTGGAGACTAAAGGATCTTGTTTATACTCACTTCGGTTTAAAAACCATCCCCCACGTCTTTCATATATTCTATCCTTTGTAACATGCGTAATTCTAATTCATACAGGGCAAGAAGCAGAAATTTCGAATTGAATCTCTTGCAGCTTTGGAGAAGATAATAGGAAGGCTGTTGTCCATTTTAGGATTGATGCCTGCAAGTTATTCTGAGGTAGAAATGGATTCATGTCACTGTATTCAAATCCTGTAACATTTTTGGGGACTTGACTTACGAACCTCACTTTTCAGAAACGGATAATGGCAAAAACTTTTGTTTTTTTTTTTTGGTTAACACAGGCTCTGGGACAGCTGAAGGAAAAGGCTTTGACACGTGCGAAGATGTCGAACGAACAAGTACTACAGAAAATAGAAGAAAGGAATGCTGCAAGAAAGAACAAGGAGTATGAAAAATCCGATGCAATCAGGAATGATCTAGCTGGTGTTGGAATTACTCTCATGGATGGCCCAAATGGAACAACTTGGAGACCAACTATTCCTCTTGCACTTCAAGAACAGCCGTCTGCTTCAACTTGA

mRNA sequence

ATGTCTAAATCTCTGGGGAACTTTTTCACCATTCGGCAGGTGATAGATCTTTACCATCCACTGGCTTTGAGGCTTTTCTTATTGGGGACACACTATCGTTCTCCAATCAACTACTCTGATTTCCTGCTTGAAAGTGCTTCAGATCGTATTTTTTACATCTATCAGACTCTTGATGACTGTAAAACTGTTATTAGCCAGCAAGATGAATCAAGTCTTAAGGGTTCCATTCCCCCAAGTTTGATGGAAGAGATCAACAAATTCTACAATGTTTTCCTGACCTCGATGTCCGATGACATTCACACTAATGTGGTTTTGGCAGCGTTATCAGATCCTTTGAAAATTATCAATGATTTGTTACATACTCGTAAGGGCAAGAAGCAGAAATTTCGAATTGAATCTCTTGCAGCTTTGGAGAAGATAATAGGAAGGCTGTTGTCCATTTTAGGATTGATGCCTGCAAGTTATTCTGAGGCTCTGGGACAGCTGAAGGAAAAGGCTTTGACACGTGCGAAGATGTCGAACGAACAAGTACTACAGAAAATAGAAGAAAGGAATGCTGCAAGAAAGAACAAGGAGTATGAAAAATCCGATGCAATCAGGAATGATCTAGCTGGTGTTGGAATTACTCTCATGGATGGCCCAAATGGAACAACTTGGAGACCAACTATTCCTCTTGCACTTCAAGAACAGCCGTCTGCTTCAACTTGA

Coding sequence (CDS)

ATGTCTAAATCTCTGGGGAACTTTTTCACCATTCGGCAGGTGATAGATCTTTACCATCCACTGGCTTTGAGGCTTTTCTTATTGGGGACACACTATCGTTCTCCAATCAACTACTCTGATTTCCTGCTTGAAAGTGCTTCAGATCGTATTTTTTACATCTATCAGACTCTTGATGACTGTAAAACTGTTATTAGCCAGCAAGATGAATCAAGTCTTAAGGGTTCCATTCCCCCAAGTTTGATGGAAGAGATCAACAAATTCTACAATGTTTTCCTGACCTCGATGTCCGATGACATTCACACTAATGTGGTTTTGGCAGCGTTATCAGATCCTTTGAAAATTATCAATGATTTGTTACATACTCGTAAGGGCAAGAAGCAGAAATTTCGAATTGAATCTCTTGCAGCTTTGGAGAAGATAATAGGAAGGCTGTTGTCCATTTTAGGATTGATGCCTGCAAGTTATTCTGAGGCTCTGGGACAGCTGAAGGAAAAGGCTTTGACACGTGCGAAGATGTCGAACGAACAAGTACTACAGAAAATAGAAGAAAGGAATGCTGCAAGAAAGAACAAGGAGTATGAAAAATCCGATGCAATCAGGAATGATCTAGCTGGTGTTGGAATTACTCTCATGGATGGCCCAAATGGAACAACTTGGAGACCAACTATTCCTCTTGCACTTCAAGAACAGCCGTCTGCTTCAACTTGA

Protein sequence

MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDCKTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLHTRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQKIEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST

Homology

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BLAST of CmaCh01G015200 vs. Swiss-Prot
Match: SYCM_ARATH (Cysteine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYCO PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.3e-84
Identity = 162/229 (70.74%), Postives = 184/229 (80.35%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFL+GTHYRSPINYSDFLLESAS+RIFYIYQTL DC
Sbjct: 329 MSKSLGNFFTIRQVIDLYHPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDC 388

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           ++ + ++D +   GS+P   +  IN F   F+ SMSDD+ T V LAA+S+PLK INDL+H
Sbjct: 389 ESALGEKDSTFENGSVPSDTLTSINTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDLIH 448

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ  R ESL ALE  I  +L+ILGLMP SYSE L QLKEKAL RA +  E VLQ+
Sbjct: 449 TRKGKKQARREESLKALETTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLKEEDVLQR 508

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQE 230
           ++ER  ARKNKEYE+SDAIR DLA VGI LMD P GTTWRP IPLALQE
Sbjct: 509 VQERTDARKNKEYERSDAIRKDLAKVGIALMDSPEGTTWRPAIPLALQE 557

[Close]

BLAST of CmaCh01G015200 vs. Swiss-Prot
Match: SYCC1_ARATH (Cysteine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana GN=At3g56300 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.8e-32
Identity = 94/229 (41.05%), Postives = 125/229 (54.59%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           M KSL NFFTIRQ+   YHPLALR FL+   YRSP+NYS   LES+SD ++ +    ++ 
Sbjct: 259 MGKSLNNFFTIRQIAANYHPLALRHFLMSAQYRSPLNYSVSQLESSSDALYSLSPYREEM 318

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
              + +  +S+          E I K  N                      LK IN  + 
Sbjct: 319 SGDVGKTQQSA-------EAKEMIKKVKNA---------------------LKFINVSIS 378

Query: 121 TRKGKKQKFR---IESLAALEKIIGRLLSILGLMPA-SYSEALGQLKEKALTRAKMSNEQ 180
             K  ++K R   + SL  +EK +  +L +LGL+   SY E L  +K+KALTRA M  E+
Sbjct: 379 KLKKMQKKQRMSLVVSLVEVEKAVREVLDVLGLLTTLSYGELLKDMKQKALTRAGMGEEE 438

Query: 181 VLQKIEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPL 226
           VLQ+IEERN ARK+K++ +SD IR  LA  GI L D P  T WRP+ PL
Sbjct: 439 VLQRIEERNMARKSKDFRRSDRIRELLAFKGIFLEDVPGDTVWRPSTPL 459

[Close]

BLAST of CmaCh01G015200 vs. Swiss-Prot
Match: SYC_ANADE (Cysteine--tRNA ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=cysS PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.7e-29
Identity = 84/223 (37.67%), Postives = 126/223 (56.50%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIR V+  +   ALR FLLGTHYR   N+SD +L  A  R+  +Y+T++  
Sbjct: 273 MSKSLGNFFTIRDVLARFDGEALRFFLLGTHYRRDFNFSDQVLAEAERRLSALYETVEKA 332

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           + +      + ++    P+ +E           ++ DD +T  VL  +++     N L  
Sbjct: 333 ERL-----GAGVEPGAEPAFVERAR-------AALDDDFNTPQVLGIVAEAFTEANALAD 392

Query: 121 TRKGKK---QKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQV 180
            RKGKK   +K R+ + A   + +G +L ILG  PA   +AL  ++++A  R  +   +V
Sbjct: 393 -RKGKKSPEEKARLAAFARGARAVGAVLGILGRPPA---QALSAIRDRAAARRGIDGSEV 452

Query: 181 LQKIEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWR 221
            + I ER AAR  K++ +SDAIR+ L   G+ LMDGP GTTW+
Sbjct: 453 ERLIAERAAARAAKDFARSDAIRDGLLARGVVLMDGPQGTTWK 479

[Close]

BLAST of CmaCh01G015200 vs. Swiss-Prot
Match: SYC_ANADF (Cysteine--tRNA ligase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=cysS PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 81/220 (36.82%), Postives = 121/220 (55.00%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFT+R V+  +    +RLF LGTHYR+PINYSD +L  A  R+ Y Y+TL+  
Sbjct: 273 MSKSLGNFFTLRDVLAKFDAEGVRLFYLGTHYRNPINYSDAILAEAERRLNYFYETLEKV 332

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
             +      +   G +    +E+  +       ++ DD +   VLA L++     N  L 
Sbjct: 333 DALAEGTSPAGEGGGV----VEDARR-------ALDDDFNAPQVLAVLAEAFTAAN-ALA 392

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
            ++GKK       LAA  + +  + + LGL+    +EAL  ++ +A  R  +    V  K
Sbjct: 393 DKRGKKTPEDRARLAAFARDVREIGTTLGLVQRRPAEALRAIRARAAARRGIDPASVEAK 452

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWR 221
           I ER  AR+ +++ +SDAIR+ L   G+ LMDGP GTTW+
Sbjct: 453 IVERAEARRARDFARSDAIRDALLAQGVALMDGPQGTTWK 480

[Close]

BLAST of CmaCh01G015200 vs. Swiss-Prot
Match: SYC_ANASK (Cysteine--tRNA ligase OS=Anaeromyxobacter sp. (strain K) GN=cysS PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 83/223 (37.22%), Postives = 124/223 (55.61%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIR V+  +   ALR FLLGTHYR   N+SD +L  A  R+  +Y+T++  
Sbjct: 273 MSKSLGNFFTIRDVLARFDGEALRFFLLGTHYRRDFNFSDQVLAEAERRLSALYETVEKA 332

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           + +      +    +  P+ +E           ++ DD +T  VL  +++     N L  
Sbjct: 333 ERL-----GAGAAPAAEPAFVERAR-------AALDDDFNTPQVLGIVAEAFTEANALAD 392

Query: 121 TRKGKK---QKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQV 180
            RKGKK   +K R+ + A   + +G +L IL   PA   +AL  ++++A  R  +   +V
Sbjct: 393 -RKGKKSPEEKARLAAFARGARAVGAVLGILDRPPA---QALSAIRDRAAARRGIDGGEV 452

Query: 181 LQKIEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWR 221
            + I ER AAR  K++ +SDAIR+ L   G+ LMDGP GTTW+
Sbjct: 453 ERSIAERAAARAAKDFARSDAIRDALLARGVVLMDGPQGTTWK 479

[Close]

BLAST of CmaCh01G015200 vs. TrEMBL
Match: A0A0A0LJ88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876000 PE=3 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 2.4e-110
Identity = 210/235 (89.36%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSD LLESASDRIFYIYQTLDDC
Sbjct: 342 MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDLLLESASDRIFYIYQTLDDC 401

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           +TVISQ+DESS KG I PSL+EEINKF NVFLTSMSDDIHT VVLAALSDPLKIINDLLH
Sbjct: 402 RTVISQEDESSFKGPIAPSLVEEINKFSNVFLTSMSDDIHTPVVLAALSDPLKIINDLLH 461

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+FR+ESLAALEKIIG +LSILGLMPASYSEAL QLKEKALTRAKM+N+QVLQK
Sbjct: 462 TRKGKKQEFRMESLAALEKIIGNVLSILGLMPASYSEALQQLKEKALTRAKMTNDQVLQK 521

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           IEERNAARKNKEYEKSD+IR DLA VGI+LMDGPNGTTWRPT+PLALQE  ++ST
Sbjct: 522 IEERNAARKNKEYEKSDSIRTDLAAVGISLMDGPNGTTWRPTVPLALQEHQASST 576

[Close]

BLAST of CmaCh01G015200 vs. TrEMBL
Match: M5XRB7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003593mg PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.3e-92
Identity = 177/235 (75.32%), Postives = 202/235 (85.96%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHY+SPINY+D LLESASDRIFYIYQTL DC
Sbjct: 329 MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYQSPINYADVLLESASDRIFYIYQTLHDC 388

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           ++ +SQ+D  +LK +IPP  +  IN FYNVF+TSMSDD+HT VVLAALSDPLK INDLLH
Sbjct: 389 ESALSQRDVVTLKDTIPPDTVNIINNFYNVFVTSMSDDLHTPVVLAALSDPLKTINDLLH 448

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+ RIESLAA  KI+G +LS LGLMP SYSE L QL++KAL RAK++ +QVLQK
Sbjct: 449 TRKGKKQELRIESLAAFGKILGNVLSTLGLMPESYSEILQQLRDKALKRAKLTEDQVLQK 508

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           I+ER AARKNKEYE+SD IR DLA VGI LMD P+GTTWRP +PLA+QEQ  + T
Sbjct: 509 IDERTAARKNKEYERSDIIRKDLAAVGIALMDSPDGTTWRPAVPLAIQEQQVSIT 563

[Close]

BLAST of CmaCh01G015200 vs. TrEMBL
Match: D7SV28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06470 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.7e-92
Identity = 178/234 (76.07%), Postives = 204/234 (87.18%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVID+YHPLALRLFL+GTHYRSPINYSD  LESASDR+FYIYQTL DC
Sbjct: 242 MSKSLGNFFTIRQVIDIYHPLALRLFLIGTHYRSPINYSDVQLESASDRVFYIYQTLHDC 301

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           +  + Q D+ + K S+PP +++ INKFYN FLTSMSDD+HT VVLAALSDPLK INDLLH
Sbjct: 302 QNAMDQ-DDMTKKDSVPPHILDCINKFYNDFLTSMSDDLHTPVVLAALSDPLKTINDLLH 361

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+ R+ESLAALEK+I  +L+ILGLMPASYSEAL QL+EKAL R+K++ + +LQK
Sbjct: 362 TRKGKKQELRLESLAALEKVIRDVLTILGLMPASYSEALLQLREKALKRSKLTEDHILQK 421

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAS 235
           IEER  ARKNKEYEKSDAIR DLA VGI LMD P+GTTWRP IPLALQEQ +A+
Sbjct: 422 IEERTMARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIPLALQEQVAAT 474

[Close]

BLAST of CmaCh01G015200 vs. TrEMBL
Match: A0A061ER82_THECC (Cysteinyl-tRNA synthetase, class Ia family protein, ARATH isoform 1 OS=Theobroma cacao GN=TCM_019993 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.9e-92
Identity = 181/235 (77.02%), Postives = 201/235 (85.53%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFL+GTHYRSPINYSD LLESAS+RIFYIYQTL DC
Sbjct: 343 MSKSLGNFFTIRQVIDLYHPLALRLFLIGTHYRSPINYSDVLLESASERIFYIYQTLHDC 402

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           +  +SQ D + L+G IPP     INKF+N FL SMSDD+HT VVLAALSDPLK INDLLH
Sbjct: 403 ENALSQHD-TRLQGFIPPETSNVINKFHNDFLVSMSDDLHTPVVLAALSDPLKTINDLLH 462

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ  RIES+AALEKII  +LS+LGLMP SYS+AL +LKE AL RAK++ +Q+LQK
Sbjct: 463 TRKGKKQAMRIESVAALEKIIRNVLSVLGLMPTSYSKALQRLKEMALQRAKLTEDQILQK 522

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           IEER+ ARKNK+YEKSDAIR DLA VGI LMD PNGTTWRP IPLALQEQ  A+T
Sbjct: 523 IEERSEARKNKDYEKSDAIRKDLAVVGIALMDSPNGTTWRPAIPLALQEQQVAAT 576

[Close]

BLAST of CmaCh01G015200 vs. TrEMBL
Match: A0A067KP27_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07135 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 7.3e-91
Identity = 176/235 (74.89%), Postives = 203/235 (86.38%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSD  LESAS+RIFYIYQTL DC
Sbjct: 343 MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLLDC 402

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           +TVISQ D    K S+ P +++ IN+F++VF+TSMSDD+HT V+LAALSDPLKIIND++H
Sbjct: 403 ETVISQHDMPVDKDSVLPEILDGINRFHDVFVTSMSDDLHTPVLLAALSDPLKIINDMIH 462

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+ RIESLAALEKI+   LS+LGLMP +YSE L QL+EKAL RAK++  +VLQK
Sbjct: 463 TRKGKKQRKRIESLAALEKIVRNALSVLGLMPTTYSEVLQQLREKALRRAKLTEVEVLQK 522

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           IEER  ARKNK+YEKSD IR DLA +GI LMDGP+GT+WRP IPLALQEQ  A+T
Sbjct: 523 IEERTVARKNKDYEKSDVIRKDLAILGIALMDGPDGTSWRPVIPLALQEQQVAAT 577

[Close]

BLAST of CmaCh01G015200 vs. TAIR10
Match: AT2G31170.1 (AT2G31170.1 Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-85
Identity = 162/229 (70.74%), Postives = 184/229 (80.35%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFL+GTHYRSPINYSDFLLESAS+RIFYIYQTL DC
Sbjct: 329 MSKSLGNFFTIRQVIDLYHPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQTLHDC 388

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           ++ + ++D +   GS+P   +  IN F   F+ SMSDD+ T V LAA+S+PLK INDL+H
Sbjct: 389 ESALGEKDSTFENGSVPSDTLTSINTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDLIH 448

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ  R ESL ALE  I  +L+ILGLMP SYSE L QLKEKAL RA +  E VLQ+
Sbjct: 449 TRKGKKQARREESLKALETTIRDVLTILGLMPTSYSEVLEQLKEKALKRAGLKEEDVLQR 508

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQE 230
           ++ER  ARKNKEYE+SDAIR DLA VGI LMD P GTTWRP IPLALQE
Sbjct: 509 VQERTDARKNKEYERSDAIRKDLAKVGIALMDSPEGTTWRPAIPLALQE 557

[Close]

BLAST of CmaCh01G015200 vs. TAIR10
Match: AT5G38830.1 (AT5G38830.1 Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-35
Identity = 98/233 (42.06%), Postives = 133/233 (57.08%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           M+KS  NF TIR++   YHPLALR FL+   YRSP++++   LES+S+ ++Y+YQTL D 
Sbjct: 272 MAKSKHNFKTIREITASYHPLALRHFLMSAQYRSPLSFTASQLESSSEALYYVYQTLQDL 331

Query: 61  KTVISQ-QDESSLKGSIPPSLMEE---INKFYNVFLTSMSDDIHT-NVVLAALSDPLKII 120
              +S  QD  S  G       E    I K    F + M DD++T +++  A  D LK I
Sbjct: 332 DEGLSPYQDALSEDGGKSEQTAEGKDIIKKLKTEFESKMLDDLNTAHILTGAYQDALKFI 391

Query: 121 NDLLHTRKGKKQKFRIE---SLAALEKIIGRLLSILGLMPA-SYSEALGQLKEKALTRAK 180
           N  L   K  ++K R+    SL  +EK    +L +LGL+   SY+E L ++K K L RA+
Sbjct: 392 NASLSKLKKMQKKQRMSMLVSLVEIEKAAREVLDVLGLLTTLSYAEILKEMKLKTLIRAE 451

Query: 181 MSNEQVLQKIEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIP 225
           +  E + Q IEER  ARKNK++ KSD IR  L   GI LMD    T WRP  P
Sbjct: 452 IGEEGISQLIEERITARKNKDFAKSDEIREKLTRKGIALMDIGKETVWRPCFP 504

[Close]

BLAST of CmaCh01G015200 vs. TAIR10
Match: AT3G56300.1 (AT3G56300.1 Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-33
Identity = 94/229 (41.05%), Postives = 125/229 (54.59%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           M KSL NFFTIRQ+   YHPLALR FL+   YRSP+NYS   LES+SD ++ +    ++ 
Sbjct: 259 MGKSLNNFFTIRQIAANYHPLALRHFLMSAQYRSPLNYSVSQLESSSDALYSLSPYREEM 318

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
              + +  +S+          E I K  N                      LK IN  + 
Sbjct: 319 SGDVGKTQQSA-------EAKEMIKKVKNA---------------------LKFINVSIS 378

Query: 121 TRKGKKQKFR---IESLAALEKIIGRLLSILGLMPA-SYSEALGQLKEKALTRAKMSNEQ 180
             K  ++K R   + SL  +EK +  +L +LGL+   SY E L  +K+KALTRA M  E+
Sbjct: 379 KLKKMQKKQRMSLVVSLVEVEKAVREVLDVLGLLTTLSYGELLKDMKQKALTRAGMGEEE 438

Query: 181 VLQKIEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPL 226
           VLQ+IEERN ARK+K++ +SD IR  LA  GI L D P  T WRP+ PL
Sbjct: 439 VLQRIEERNMARKSKDFRRSDRIRELLAFKGIFLEDVPGDTVWRPSTPL 459

[Close]

BLAST of CmaCh01G015200 vs. NCBI nr
Match: gi|659132890|ref|XP_008466439.1| (PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo])

HSP 1 Score: 410.2 bits (1053), Expect = 2.4e-111
Identity = 212/235 (90.21%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSD LLESASDRIFYIYQTLDDC
Sbjct: 342 MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDLLLESASDRIFYIYQTLDDC 401

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           +TVISQQDESS KGSI PSLMEEINKFYNVFLTSMSDDIHT VVLAALSDPLKIINDLLH
Sbjct: 402 RTVISQQDESSFKGSIAPSLMEEINKFYNVFLTSMSDDIHTPVVLAALSDPLKIINDLLH 461

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+FR+ESLAALEKIIG +LSILGLMPASYSEAL QLKEKAL RAKM+N+QVLQK
Sbjct: 462 TRKGKKQEFRMESLAALEKIIGNVLSILGLMPASYSEALQQLKEKALKRAKMTNDQVLQK 521

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           IEERNAARKNKEYEKSD+IR DLA VGI LMDGPNGTTWRP++PLALQE  ++ST
Sbjct: 522 IEERNAARKNKEYEKSDSIRTDLAAVGIALMDGPNGTTWRPSVPLALQEHQASST 576

[Close]

BLAST of CmaCh01G015200 vs. NCBI nr
Match: gi|659132892|ref|XP_008466440.1| (PREDICTED: cysteine--tRNA ligase, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 410.2 bits (1053), Expect = 2.4e-111
Identity = 212/235 (90.21%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSD LLESASDRIFYIYQTLDDC
Sbjct: 167 MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDLLLESASDRIFYIYQTLDDC 226

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           +TVISQQDESS KGSI PSLMEEINKFYNVFLTSMSDDIHT VVLAALSDPLKIINDLLH
Sbjct: 227 RTVISQQDESSFKGSIAPSLMEEINKFYNVFLTSMSDDIHTPVVLAALSDPLKIINDLLH 286

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+FR+ESLAALEKIIG +LSILGLMPASYSEAL QLKEKAL RAKM+N+QVLQK
Sbjct: 287 TRKGKKQEFRMESLAALEKIIGNVLSILGLMPASYSEALQQLKEKALKRAKMTNDQVLQK 346

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           IEERNAARKNKEYEKSD+IR DLA VGI LMDGPNGTTWRP++PLALQE  ++ST
Sbjct: 347 IEERNAARKNKEYEKSDSIRTDLAAVGIALMDGPNGTTWRPSVPLALQEHQASST 401

[Close]

BLAST of CmaCh01G015200 vs. NCBI nr
Match: gi|449437168|ref|XP_004136364.1| (PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 3.5e-110
Identity = 210/235 (89.36%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSD LLESASDRIFYIYQTLDDC
Sbjct: 342 MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDLLLESASDRIFYIYQTLDDC 401

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           +TVISQ+DESS KG I PSL+EEINKF NVFLTSMSDDIHT VVLAALSDPLKIINDLLH
Sbjct: 402 RTVISQEDESSFKGPIAPSLVEEINKFSNVFLTSMSDDIHTPVVLAALSDPLKIINDLLH 461

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+FR+ESLAALEKIIG +LSILGLMPASYSEAL QLKEKALTRAKM+N+QVLQK
Sbjct: 462 TRKGKKQEFRMESLAALEKIIGNVLSILGLMPASYSEALQQLKEKALTRAKMTNDQVLQK 521

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           IEERNAARKNKEYEKSD+IR DLA VGI+LMDGPNGTTWRPT+PLALQE  ++ST
Sbjct: 522 IEERNAARKNKEYEKSDSIRTDLAAVGISLMDGPNGTTWRPTVPLALQEHQASST 576

[Close]

BLAST of CmaCh01G015200 vs. NCBI nr
Match: gi|778686882|ref|XP_011652464.1| (PREDICTED: cysteine--tRNA ligase isoform X2 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 3.5e-110
Identity = 210/235 (89.36%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSD LLESASDRIFYIYQTLDDC
Sbjct: 167 MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDLLLESASDRIFYIYQTLDDC 226

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           +TVISQ+DESS KG I PSL+EEINKF NVFLTSMSDDIHT VVLAALSDPLKIINDLLH
Sbjct: 227 RTVISQEDESSFKGPIAPSLVEEINKFSNVFLTSMSDDIHTPVVLAALSDPLKIINDLLH 286

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+FR+ESLAALEKIIG +LSILGLMPASYSEAL QLKEKALTRAKM+N+QVLQK
Sbjct: 287 TRKGKKQEFRMESLAALEKIIGNVLSILGLMPASYSEALQQLKEKALTRAKMTNDQVLQK 346

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           IEERNAARKNKEYEKSD+IR DLA VGI+LMDGPNGTTWRPT+PLALQE  ++ST
Sbjct: 347 IEERNAARKNKEYEKSDSIRTDLAAVGISLMDGPNGTTWRPTVPLALQEHQASST 401

[Close]

BLAST of CmaCh01G015200 vs. NCBI nr
Match: gi|694330127|ref|XP_009355779.1| (PREDICTED: cysteine--tRNA ligase, mitochondrial isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 352.1 bits (902), Expect = 7.7e-94
Identity = 179/235 (76.17%), Postives = 203/235 (86.38%), Query Frame = 1


Query: 1   MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDFLLESASDRIFYIYQTLDDC 60
           MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHY+SPINYSD LLESASDRIFYIYQ L DC
Sbjct: 242 MSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYQSPINYSDALLESASDRIFYIYQALHDC 301

Query: 61  KTVISQQDESSLKGSIPPSLMEEINKFYNVFLTSMSDDIHTNVVLAALSDPLKIINDLLH 120
           ++ +SQ +  +LK +IPP  +  +N FYNVFLTSMSDD+HT VVLAALSDPLK INDLLH
Sbjct: 302 ESALSQNNAVTLKDTIPPDTLNSVNNFYNVFLTSMSDDLHTPVVLAALSDPLKTINDLLH 361

Query: 121 TRKGKKQKFRIESLAALEKIIGRLLSILGLMPASYSEALGQLKEKALTRAKMSNEQVLQK 180
           TRKGKKQ+ R+ESLAAL  II  +LS+LGLMPASY E L +LK+KAL RAK++ +QVLQK
Sbjct: 362 TRKGKKQELRMESLAALGTIIKNVLSVLGLMPASYPEILQELKDKALKRAKLTEDQVLQK 421

Query: 181 IEERNAARKNKEYEKSDAIRNDLAGVGITLMDGPNGTTWRPTIPLALQEQPSAST 236
           IEERNAARKNKEYE+SD IR DLA VGI LMD P+GTTWRPT+PLA+QEQ  A+T
Sbjct: 422 IEERNAARKNKEYERSDTIRKDLAAVGIALMDSPDGTTWRPTVPLAIQEQQVATT 476

The following BLAST results are available for this feature:

BLAST of CmaCh01G015200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYCM_ARATH	3.3e-84	70.74	Cysteine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SY...	[more]
SYCC1_ARATH	3.8e-32	41.05	Cysteine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana GN=At3g56300 PE=3 S...	[more]
SYC_ANADE	6.7e-29	37.67	Cysteine--tRNA ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=cysS PE...	[more]
SYC_ANADF	1.1e-28	36.82	Cysteine--tRNA ligase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=cysS PE=3 SV=1	[more]
SYC_ANASK	1.3e-27	37.22	Cysteine--tRNA ligase OS=Anaeromyxobacter sp. (strain K) GN=cysS PE=3 SV=1	[more]

BLAST of CmaCh01G015200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ88_CUCSA	2.4e-110	89.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876000 PE=3 SV=1	[more]
M5XRB7_PRUPE	1.3e-92	75.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003593mg PE=3 SV=1	[more]
D7SV28_VITVI	1.7e-92	76.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06470 PE=3 SV=...	[more]
A0A061ER82_THECC	3.9e-92	77.02	Cysteinyl-tRNA synthetase, class Ia family protein, ARATH isoform 1 OS=Theobroma...	[more]
A0A067KP27_JATCU	7.3e-91	74.89	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07135 PE=3 SV=1	[more]

BLAST of CmaCh01G015200 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31170.1	1.8e-85	70.74	Cysteinyl-tRNA synthetase, class Ia family protein	[more]
AT5G38830.1	1.3e-35	42.06	Cysteinyl-tRNA synthetase, class Ia family protein	[more]
AT3G56300.1	2.1e-33	41.05	Cysteinyl-tRNA synthetase, class Ia family protein	[more]

BLAST of CmaCh01G015200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132890\|ref\|XP_008466439.1\|	2.4e-111	90.21	PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo]	[more]
gi\|659132892\|ref\|XP_008466440.1\|	2.4e-111	90.21	PREDICTED: cysteine--tRNA ligase, mitochondrial isoform X2 [Cucumis melo]	[more]
gi\|449437168\|ref\|XP_004136364.1\|	3.5e-110	89.36	PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Cucumis sativus]	[more]
gi\|778686882\|ref\|XP_011652464.1\|	3.5e-110	89.36	PREDICTED: cysteine--tRNA ligase isoform X2 [Cucumis sativus]	[more]
gi\|694330127\|ref\|XP_009355779.1\|	7.7e-94	76.17	PREDICTED: cysteine--tRNA ligase, mitochondrial isoform X2 [Pyrus x bretschneide...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009080	tRNAsynth_Ia_anticodon-bd
IPR014729	Rossmann-like_a/b/a_fold
IPR024909	Cys-tRNA/MSH_ligase

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0004812	aminoacyl-tRNA ligase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006418	tRNA aminoacylation for protein translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0042407	cristae formation
biological_process	GO:0006534	cysteine metabolic process
biological_process	GO:0006423	cysteinyl-tRNA aminoacylation
biological_process	GO:0048481	plant ovule development
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0043067	regulation of programmed cell death
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004817	cysteine-tRNA ligase activity
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G015200.1	CmaCh01G015200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	unknown	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	coord: 73..221 score: 2.75
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	G3DSA:3.40.50.620		coord: 1..39 score: 3.1
IPR024909	Cysteinyl-tRNA synthetase/mycothiol ligase	PANTHER	PTHR10890	CYSTEINYL-TRNA SYNTHETASE	coord: 1..230 score: 5.8E
None	No IPR available	GENE3D	G3DSA:1.20.120.640		coord: 43..149 score: 5.
None	No IPR available	PANTHER	PTHR10890:SF8	CYSTEINYL-TRNA SYNTHETASE	coord: 1..230 score: 5.8E
None	No IPR available	unknown	SSF52374	Nucleotidylyl transferase	coord: 1..62 score: 6.17

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G015200	Cucurbita maxima (Rimu)	cmacmaB044
CmaCh01G015200	Cucurbita maxima (Rimu)	cmacmaB055
CmaCh01G015200	Cucurbita maxima (Rimu)	cmacmaB183
CmaCh01G015200	Cucurbita maxima (Rimu)	cmacmaB434
CmaCh01G015200	Cucumber (Gy14) v1	cgycmaB0863
CmaCh01G015200	Cucurbita moschata (Rifu)	cmacmoB431
CmaCh01G015200	Cucurbita moschata (Rifu)	cmacmoB440
CmaCh01G015200	Cucurbita moschata (Rifu)	cmacmoB455
CmaCh01G015200	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G015200	Wild cucumber (PI 183967)	cmacpiB448
CmaCh01G015200	Cucumber (Chinese Long) v2	cmacuB445
CmaCh01G015200	Watermelon (Charleston Gray)	cmawcgB409
CmaCh01G015200	Watermelon (Charleston Gray)	cmawcgB414
CmaCh01G015200	Watermelon (97103) v1	cmawmB436
CmaCh01G015200	Watermelon (97103) v1	cmawmB443
CmaCh01G015200	Cucurbita pepo (Zucchini)	cmacpeB490
CmaCh01G015200	Cucurbita pepo (Zucchini)	cmacpeB502
CmaCh01G015200	Cucurbita pepo (Zucchini)	cmacpeB512
CmaCh01G015200	Bottle gourd (USVL1VR-Ls)	cmalsiB425
CmaCh01G015200	Bottle gourd (USVL1VR-Ls)	cmalsiB433
CmaCh01G015200	Cucumber (Gy14) v2	cgybcmaB359
CmaCh01G015200	Melon (DHL92) v3.6.1	cmamedB469
CmaCh01G015200	Silver-seed gourd	carcmaB0186
CmaCh01G015200	Silver-seed gourd	carcmaB0894
CmaCh01G015200	Silver-seed gourd	carcmaB0898
CmaCh01G015200	Silver-seed gourd	carcmaB0947
CmaCh01G015200	Silver-seed gourd	carcmaB1353
CmaCh01G015200	Cucumber (Chinese Long) v3	cmacucB0531
CmaCh01G015200	Cucumber (Chinese Long) v3	cmacucB0537
CmaCh01G015200	Watermelon (97103) v2	cmawmbB475
CmaCh01G015200	Watermelon (97103) v2	cmawmbB482
CmaCh01G015200	Watermelon (97103) v2	cmawmbB489
CmaCh01G015200	Wax gourd	cmawgoB0601