CmaCh00G001040 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001040
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPolygalacturonase
LocationCma_Chr00 : 4731612 .. 4732544 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATCATGAACACTTGTATCATTAAGTTTTCTGTGTCTCTTCTTGTAATCTTACATGTTTTTCTTTCCCTTCAACTTTTTTTTTTTAACCATGCCTCAGCTGCTGAATTAACATTCAATATTGTTACTCTCGGAGCTAAGCCTGATGAAAAGACCGATGCCTCGCCTGTGCTTCAAACGGCATGGGCTAAGGCCTGTGACTCATCTGAACCAGCCACTATTTACGTTCCGGAGGGTATATTCTTCGTTCGAAGTGTGATATTTAATGGGCCTTGTAAGAACAATGCTATTACTATTCTCATTGATGGAACTCTTGTGGCTTCCTCGGACATTCAAGTTTTAGCTAATTCTAGTTCTTGGATTTTGTTTAATCACATAAATGGGCTTTCCATCACTGGCGGTATTATTGATGGACAAGGAACTCCCCTATGGAATTGTAAACACTCAAGGAAGAGTTGCCCCATTGGAGCCCGGGTATGCAGAATTTGAGTTGGCTCCATATAAAAAAAATTTGAAATTTTTTCTAAAACGGAAAGTTGAATGAAAATAACTGGATTCATTAGGGTTTAGGGTTTATGGATTAATATTATTTTAAATTTTTACTAATTCTCTCTTTTGATTGTTTTGAATTGATAGAGTCTTCAAATAAATGATGAAAAGAATGTGAACATCAATGGATTATCTTCAATTAACAGCCAATTGTTCAGCATTGTAATGAATCGGTGCCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCAGGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTGGAAACGGTGACGACTGCATCTCCATCGGTCCAGGGACATCCAACATGTGGATTGAAAGTATTACATGTGGACCTGGACATGGAATCAGGTAA

mRNA sequence

ATGCATATCATGAACACTTGTATCATTAAGTTTTCTGTGTCTCTTCTTGTAATCTTACATGTTTTTCTTTCCCTTCAACTTTTTTTTTTTAACCATGCCTCAGCTGCTGAATTAACATTCAATATTGTTACTCTCGGAGCTAAGCCTGATGAAAAGACCGATGCCTCGCCTGTGCTTCAAACGGCATGGGCTAAGGCCTGTGACTCATCTGAACCAGCCACTATTTACGTTCCGGAGGGTATATTCTTCGTTCGAAGTGTGATATTTAATGGGCCTTGTAAGAACAATGCTATTACTATTCTCATTGATGGAACTCTTGTGGCTTCCTCGGACATTCAAGTTTTAGCTAATTCTAGTTCTTGGATTTTGTTTAATCACATAAATGGGCTTTCCATCACTGGCGGTATTATTGATGGACAAGGAACTCCCCTATGGAATTGTAAACACTCAAGGAAGAGTTGCCCCATTGGAGCCCGGAGTCTTCAAATAAATGATGAAAAGAATGTGAACATCAATGGATTATCTTCAATTAACAGCCAATTGTTCAGCATTGTAATGAATCGGTGCCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCAGGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTGGAAACGGTGACGACTGCATCTCCATCGGTCCAGGGACATCCAACATGTGGATTGAAAGTATTACATGTGGACCTGGACATGGAATCAGGTAA

Coding sequence (CDS)

ATGCATATCATGAACACTTGTATCATTAAGTTTTCTGTGTCTCTTCTTGTAATCTTACATGTTTTTCTTTCCCTTCAACTTTTTTTTTTTAACCATGCCTCAGCTGCTGAATTAACATTCAATATTGTTACTCTCGGAGCTAAGCCTGATGAAAAGACCGATGCCTCGCCTGTGCTTCAAACGGCATGGGCTAAGGCCTGTGACTCATCTGAACCAGCCACTATTTACGTTCCGGAGGGTATATTCTTCGTTCGAAGTGTGATATTTAATGGGCCTTGTAAGAACAATGCTATTACTATTCTCATTGATGGAACTCTTGTGGCTTCCTCGGACATTCAAGTTTTAGCTAATTCTAGTTCTTGGATTTTGTTTAATCACATAAATGGGCTTTCCATCACTGGCGGTATTATTGATGGACAAGGAACTCCCCTATGGAATTGTAAACACTCAAGGAAGAGTTGCCCCATTGGAGCCCGGAGTCTTCAAATAAATGATGAAAAGAATGTGAACATCAATGGATTATCTTCAATTAACAGCCAATTGTTCAGCATTGTAATGAATCGGTGCCAAAACGTGCATATGACAAGAGTGAATGTCTTGGCTGCAGGCGATAGTCCAAACACTGATGGCATCCATGTGCGACAATCATCAGATGTGACCATCCTCAACTCAAACATTGGAAACGGTGACGACTGCATCTCCATCGGTCCAGGGACATCCAACATGTGGATTGAAAGTATTACATGTGGACCTGGACATGGAATCAGGTAA

Protein sequence

MHIMNTCIIKFSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGIR
Homology
[Close]
BLAST of CmaCh00G001040 vs. Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.5e-77
Identity = 140/246 (56.91%), Postives = 180/246 (73.17%), Query Frame = 1 

Query: 11  FSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSS 70
           FS+SL+ +         F  N A A+ LT+N+ +LGAK D KTD++    +AWAKAC S 
Sbjct: 8   FSLSLIFV---------FMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASM 67

Query: 71  EPATIYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGL 130
            P  IYVP G FF+R V+F+GPCKNNAIT  I GTLVA SD +V+ N+++WI F+H+NG+
Sbjct: 68  NPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGV 127

Query: 131 SITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRC 190
           +I+GGI+DGQGT LW CK    +SCP GA +L  +D  N+ ++GL+S+NSQ+F IV+N  
Sbjct: 128 TISGGILDGQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDF 187

Query: 191 QNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITC 250
           QNV M  V V  +G+SPNTDGIHV+ SS VTILNS I  GDDC+SIGPGTSN+WIE + C
Sbjct: 188 QNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVAC 244

Query: 251 GPGHGI 256
           GPGHGI
Sbjct: 248 GPGHGI 244

[Close]
BLAST of CmaCh00G001040 vs. Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.0e-55
Identity = 114/255 (44.71%), Postives = 163/255 (63.92%), Query Frame = 1 

Query: 3   IMNTCIIKFSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTA 62
           + NT  +   ++L+++    +S      + A     T N+++ GAKPD   D++     A
Sbjct: 2   VYNTSCLILPLALIILDFTLIS------SLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAA 61

Query: 63  WAKACDSSEPATIYVPEGIFFVRSVIFNG-PCKNNAITILIDGTLVASSDIQVLANSSSW 122
           W  AC S+ P TI VP+G F V +++F+G  CK   I+I I G++VA  D +++A+S  W
Sbjct: 62  WDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHW 121

Query: 123 ILFNHINGLSITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQ 182
           I F  +  +SI GGI+D QGT LW CK++   +CP GA+SL  +   N+ I+GL+SINSQ
Sbjct: 122 IWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQ 181

Query: 183 LFSIVMNRCQNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTS 242
            F IV++   NV++  V V A  +SPNTDGIHV  S  V I NS IG GDDCISIGPG++
Sbjct: 182 KFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGST 241

Query: 243 NMWIESITCGPGHGI 256
           N++I++I CGPGHGI
Sbjct: 242 NVFIQTIRCGPGHGI 250

[Close]
BLAST of CmaCh00G001040 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-46
Identity = 100/226 (44.25%), Postives = 141/226 (62.39%), Query Frame = 1 

Query: 33  ASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVIFNGP 92
           AS    +F+I  LGA  + KTD++  +Q AWA AC  +   TI +P+G F V  + F GP
Sbjct: 34  ASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGP 93

Query: 93  CKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITG-GIIDGQGTPLWNCKHSR 152
           CK + +TI +DG L+A++D+       +WI    ++ L ITG G +DGQG  +W+     
Sbjct: 94  CKGD-VTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCT 153

Query: 153 KS--CPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAAGDSPNTD 212
           K   C I   SL ++   N  ++G++ +NS+ F + M +C+N+ +  V V A GDSPNTD
Sbjct: 154 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTD 213

Query: 213 GIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           GIH+  SS +TI N+ IG GDDCISIGPGTS + I  +TCGPGHGI
Sbjct: 214 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGI 258

[Close]
BLAST of CmaCh00G001040 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-46
Identity = 100/226 (44.25%), Postives = 142/226 (62.83%), Query Frame = 1 

Query: 33  ASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVIFNGP 92
           AS    +F+I  LGA  + KTD++  +Q AWA AC  +   TI +P+G F V  + F GP
Sbjct: 34  ASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGP 93

Query: 93  CKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITG-GIIDGQGTPLWNCKHSR 152
           CK + +TI +DG L+A++D+    +  +WI    ++ L ITG G +DGQG  +W+     
Sbjct: 94  CKGD-VTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCT 153

Query: 153 KS--CPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAAGDSPNTD 212
           K   C I   SL ++   N  ++G++ +NS+ F + M RC+++ +  V V A GDSPNTD
Sbjct: 154 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 213

Query: 213 GIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           GIH+  SS +TI N+ IG GDDCISIGPGTS + I  +TCGPGHGI
Sbjct: 214 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGI 258

[Close]
BLAST of CmaCh00G001040 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.9e-46
Identity = 100/226 (44.25%), Postives = 143/226 (63.27%), Query Frame = 1 

Query: 33  ASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVIFNGP 92
           AS    +F+I  LGA  + KTD++  +Q AWA AC  +   TI +P+G F V  + F GP
Sbjct: 34  ASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGP 93

Query: 93  CKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITG-GIIDGQGTPLW--NCKH 152
           CK + +TI ++G L+A++D+    +  +WI    ++ L ITG G +DGQG  +W  N   
Sbjct: 94  CKGD-VTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCV 153

Query: 153 SRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAAGDSPNTD 212
            +  C I   SL ++   N  ++G++ +NS+ F + M +C+++ +  VNV A GDSPNTD
Sbjct: 154 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 213

Query: 213 GIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           GIH+  SS VTI N+ IG GDDCISIGPGTS + I  +TCGPGHGI
Sbjct: 214 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGI 258

[Close]
BLAST of CmaCh00G001040 vs. TrEMBL
Match: A0A0A0KN91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.2e-85
Identity = 157/233 (67.38%), Postives = 188/233 (80.69%), Query Frame = 1 

Query: 23  LSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIF 82
           LSL   F NH  AA  TFNIV+LGA  D KTDAS   Q AWA AC SSEPATIYVP G F
Sbjct: 10  LSLLFLFLNHGLAAGSTFNIVSLGAIADGKTDASHAFQEAWANACGSSEPATIYVPNGAF 69

Query: 83  FVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITGGIIDGQGT 142
           +++S  F+GPCKNNAITI+I+GTL+ASS+IQVLA S +WI F  INGLSI GG+IDGQG 
Sbjct: 70  YIQSGNFSGPCKNNAITIVINGTLIASSNIQVLAQSQAWIAFRQINGLSIYGGVIDGQGI 129

Query: 143 PLWNCKHSRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAA 202
            LWNCKHS KSCP GA +L+I+  +NVN+NGLSSINSQ+F+IV+  C+NV +  VNV +A
Sbjct: 130 GLWNCKHSGKSCPDGATNLEISHAQNVNVNGLSSINSQMFNIVVYGCENVQIQGVNVSSA 189

Query: 203 GDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           GDSPNTDGIHV+QS +V I +++IG GDDCISIGPGT+N+W+E+I CGPGHGI
Sbjct: 190 GDSPNTDGIHVQQSLNVNISSTSIGTGDDCISIGPGTTNLWMENIKCGPGHGI 242

[Close]
BLAST of CmaCh00G001040 vs. TrEMBL
Match: Q1A230_PRUDO (Polygalacturonase OS=Prunus domestica subsp. insititia PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 5.3e-79
Identity = 145/246 (58.94%), Postives = 183/246 (74.39%), Query Frame = 1 

Query: 11  FSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSS 70
           FS+SL+ +         F  N A A  +T+N+ +LGAK D KTD++    +AWAKAC S 
Sbjct: 8   FSLSLIFV---------FMINSAIATPVTYNVASLGAKADGKTDSTKAFLSAWAKACASM 67

Query: 71  EPATIYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGL 130
            P  IYVP G FF+R V+F+GPCKNNAIT  I GTLVA SD QV+ N+++WI F+H+NG+
Sbjct: 68  NPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYQVIGNAANWIFFHHVNGV 127

Query: 131 SITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRC 190
           +I+GGI+DGQGT LW CK S  KSCP GA +L  +D  N+ ++GL+S+NSQ+F IV+N C
Sbjct: 128 TISGGILDGQGTALWACKASNGKSCPSGATTLSFSDSNNIVVSGLASVNSQMFHIVINDC 187

Query: 191 QNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITC 250
           QNV M  V V A+G+SPNTDGIHV+ SS VTILNS I  GDDC+SIGPGTSN+WIES+ C
Sbjct: 188 QNVQMQGVKVSASGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIESVAC 244

Query: 251 GPGHGI 256
           GPGHGI
Sbjct: 248 GPGHGI 244

[Close]
BLAST of CmaCh00G001040 vs. TrEMBL
Match: F6KPP9_PRUAR (Endopolygalacturonase OS=Prunus armeniaca GN=PG PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.5e-78
Identity = 144/246 (58.54%), Postives = 183/246 (74.39%), Query Frame = 1 

Query: 11  FSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSS 70
           FS+SL+ +         F  N A A  +T+N+ +LGAK D KTD++    +AWAKAC S 
Sbjct: 8   FSLSLIFV---------FMINSAIATPVTYNVASLGAKADGKTDSTKAFLSAWAKACASM 67

Query: 71  EPATIYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGL 130
            P  IYVP G FF+R V+F+GPCKNNAIT  I GTLVA SD +V+ N+++WI F+H+NG+
Sbjct: 68  NPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGV 127

Query: 131 SITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRC 190
           +I+GGI+DGQGT LW CK S  +SCP GA +L  +D  N+ ++GL+S+NSQ+F IV+N C
Sbjct: 128 TISGGILDGQGTALWACKASHGESCPSGATTLSFSDSNNIVVSGLASLNSQMFHIVINDC 187

Query: 191 QNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITC 250
           QNV M  V V A+G+SPNTDGIHV+ SS VTILNS I  GDDCISIGPGTSN+WIES+ C
Sbjct: 188 QNVQMQGVRVSASGNSPNTDGIHVQMSSGVTILNSKIATGDDCISIGPGTSNLWIESVAC 244

Query: 251 GPGHGI 256
           GPGHGI
Sbjct: 248 GPGHGI 244

[Close]
BLAST of CmaCh00G001040 vs. TrEMBL
Match: M5VW01_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007271mg PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 136/223 (60.99%), Postives = 177/223 (79.37%), Query Frame = 1 

Query: 33  ASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRSVIFNGP 92
           A+AA+LT+++ +LGA  D KTD++ V  +AW+KAC S +PA IYVP G F V++  F+GP
Sbjct: 4   ANAADLTYSVTSLGAIADGKTDSTKVFLSAWSKACASVQPAVIYVPAGRFLVQNAAFSGP 63

Query: 93  CKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITGGIIDGQGTPLWNCKHSRK 152
           CKNNAIT  IDGTLVA SD +V+ N+ +WILF H+NG++I+GG++DGQGT LW CK S K
Sbjct: 64  CKNNAITFRIDGTLVAPSDYRVIGNAGNWILFEHVNGVTISGGLLDGQGTGLWACKASTK 123

Query: 153 SCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAAGDSPNTDGIH 212
           SCP GA +L  +   N+ +NGL+S+NSQ+F IV+N CQNV M  V V A+G+SPNTDGIH
Sbjct: 124 SCPRGATTLGFSSSNNIVVNGLASLNSQMFHIVINGCQNVKMQGVKVSASGNSPNTDGIH 183

Query: 213 VRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           V+ SS+VTILNS I  GDDC+SIGPGT+N+WIE++ CGPGHGI
Sbjct: 184 VQMSSEVTILNSKIATGDDCVSIGPGTTNLWIENVACGPGHGI 226

[Close]
BLAST of CmaCh00G001040 vs. TrEMBL
Match: A0A0N9M5I6_PRUAR (Polygalacturonase OS=Prunus armeniaca GN=PG1 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 143/246 (58.13%), Postives = 184/246 (74.80%), Query Frame = 1 

Query: 11  FSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSS 70
           FS+SL+ +         F  N A A  +T+N+ +LGAK D KTD++    +AWAKAC S 
Sbjct: 8   FSLSLIFV---------FMINSAIATPVTYNVASLGAKADGKTDSTKAFLSAWAKACASM 67

Query: 71  EPATIYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGL 130
            P+ IYVP G FF+R V+F+GPCK+NAIT  I GTLVA SD +V+ N+++WI F+H+NG+
Sbjct: 68  NPSVIYVPAGTFFLRDVVFSGPCKSNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGV 127

Query: 131 SITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRC 190
           +I+GGI+DGQGT LW CK S  +SCP GA +L  +D  N+ ++GL+S+NSQ+F IV+N C
Sbjct: 128 TISGGILDGQGTALWACKASHGESCPSGATTLSFSDSNNIVVSGLASLNSQMFHIVINDC 187

Query: 191 QNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITC 250
           QNV M  V V A+G+SPNTDGIHV+ SS VTILNS I  GDDCISIGPGTSN+WIES+ C
Sbjct: 188 QNVQMQGVRVSASGNSPNTDGIHVQMSSGVTILNSKIATGDDCISIGPGTSNLWIESVAC 244

Query: 251 GPGHGI 256
           GPGHGI
Sbjct: 248 GPGHGI 244

[Close]
BLAST of CmaCh00G001040 vs. TAIR10
Match: AT3G59850.1 (AT3G59850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-70
Identity = 126/243 (51.85%), Postives = 172/243 (70.78%), Query Frame = 1 

Query: 14  SLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPA 73
           SLL++L       LF  + +S++  T+NI++ GAKPD KTD++      WAKAC S +P 
Sbjct: 4   SLLIVL-------LFLLSVSSSSAQTYNILSYGAKPDGKTDSTKAFTVLWAKACASVKPV 63

Query: 74  TIYVPEGIFFVRSVIFNGP-CKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSI 133
           TI VP+G F +RS+IF+G  CK  ++T  I GTLVA SD +V+   + WILF H++G+S+
Sbjct: 64  TILVPKGRFLLRSIIFDGSKCKRKSVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISV 123

Query: 134 TGGIIDGQGTPLWNCKHSRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNV 193
            GG++D QG  LW+CK S K+CP GA S+     +NV I+GL+S+NSQ+F + +N C NV
Sbjct: 124 YGGVLDAQGASLWSCKKSGKNCPSGATSIGFQSSRNVVISGLTSLNSQMFHVAINGCSNV 183

Query: 194 HMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPG 253
            +  V V A G+SPNTDGIHV+ SS V+ILNS I  GDDC+SIGPGT+ +WIE++ CGPG
Sbjct: 184 KLDGVKVSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPG 239

Query: 254 HGI 256
           HGI
Sbjct: 244 HGI 239

[Close]
BLAST of CmaCh00G001040 vs. TAIR10
Match: AT2G43870.1 (AT2G43870.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-69
Identity = 120/234 (51.28%), Postives = 166/234 (70.94%), Query Frame = 1 

Query: 23  LSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIF 82
           L L +FFF  + +A+ ++N+++ GAKPD KTDA+      W  AC SS P TI VP+G F
Sbjct: 5   LVLFVFFFISSCSAQ-SYNVLSFGAKPDGKTDATKAFMAVWQTACASSRPVTIVVPKGRF 64

Query: 83  FVRSVIFNGP-CKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITGGIIDGQG 142
            +RSV F+G  CK   +T  IDGTLVA +D +V+ N   WI F H++G+++ GG++D +G
Sbjct: 65  LLRSVTFDGSKCKPKPVTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGVLDARG 124

Query: 143 TPLWNCKHSRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLA 202
             LW+CK S K+CP GA ++      NV ++GL+S+NSQ+F +V+N C NV +  V VLA
Sbjct: 125 ASLWDCKKSGKNCPSGATTIGFQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLA 184

Query: 203 AGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           AG+SPNTDGIHV+ SS V+I N+ I  GDDC+SIGPGT+ +WIE++ CGPGHGI
Sbjct: 185 AGNSPNTDGIHVQSSSSVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGI 237

[Close]
BLAST of CmaCh00G001040 vs. TAIR10
Match: AT2G43890.1 (AT2G43890.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 4.6e-58
Identity = 111/241 (46.06%), Postives = 155/241 (64.32%), Query Frame = 1 

Query: 15  LLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPAT 74
           L+ +L +F S   F    +S A   +N+V+ GAKPD +TD++     AW  AC S+   T
Sbjct: 6   LVAVLLMFFSS--FLLMKSSTAASNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVT 65

Query: 75  IYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITG 134
           + VP G F ++ V F GPC++  IT  I GT+VA SD + L NS  WILF  +N +SI G
Sbjct: 66  VTVPRGSFLLKPVEFRGPCRSR-ITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIG 125

Query: 135 GIIDGQGTPLWNCKHSRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHM 194
           G +D +G   W C+ S KSCP+GARS+  N   +V ++GL+SINSQ   +V+N C NV +
Sbjct: 126 GTLDARGASFWACRKSGKSCPVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIV 185

Query: 195 TRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHG 254
            +V ++A   SPNTDG+HV+ S+ VT+ +     GDDCISIGPGT N+++  + CGPGHG
Sbjct: 186 RKVKLVAPDQSPNTDGLHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHG 243

Query: 255 I 256
           I
Sbjct: 246 I 243

[Close]
BLAST of CmaCh00G001040 vs. TAIR10
Match: AT1G05650.1 (AT1G05650.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 221.1 bits (562), Expect = 7.9e-58
Identity = 102/229 (44.54%), Postives = 147/229 (64.19%), Query Frame = 1 

Query: 27  LFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIFFVRS 86
           L F + +S+A + FN+V+ GAKPD  TD++     AW  AC S+  AT+ VP G F ++ 
Sbjct: 15  LTFIDVSSSASIVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAASATVVVPTGTFLLKV 74

Query: 87  VIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITGGIIDGQGTPLWN 146
           + F GPCK+  IT  + GT+VA  D +   NS SWILFN +N  S+ GG  D +G+  W+
Sbjct: 75  ITFGGPCKSK-ITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSLVGGTFDARGSGFWS 134

Query: 147 CKHSRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAAGDSP 206
           C+ S ++CP G RS+  N  K+V I+G+ S+NSQ+  + +N C NV +  + ++A GDSP
Sbjct: 135 CRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVAVRNIRLVAPGDSP 194

Query: 207 NTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           NTDG  V+ S+ VT+  S +  GDDC++IG GT N  I  + CGPGHG+
Sbjct: 195 NTDGFTVQFSTGVTLTGSTVQTGDDCVAIGQGTRNFLISKLACGPGHGV 242

[Close]
BLAST of CmaCh00G001040 vs. TAIR10
Match: AT2G43860.1 (AT2G43860.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-56
Identity = 114/255 (44.71%), Postives = 163/255 (63.92%), Query Frame = 1 

Query: 3   IMNTCIIKFSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTA 62
           + NT  +   ++L+++    +S      + A     T N+++ GAKPD   D++     A
Sbjct: 2   VYNTSCLILPLALIILDFTLIS------SLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAA 61

Query: 63  WAKACDSSEPATIYVPEGIFFVRSVIFNG-PCKNNAITILIDGTLVASSDIQVLANSSSW 122
           W  AC S+ P TI VP+G F V +++F+G  CK   I+I I G++VA  D +++A+S  W
Sbjct: 62  WDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHW 121

Query: 123 ILFNHINGLSITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQ 182
           I F  +  +SI GGI+D QGT LW CK++   +CP GA+SL  +   N+ I+GL+SINSQ
Sbjct: 122 IWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQ 181

Query: 183 LFSIVMNRCQNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTS 242
            F IV++   NV++  V V A  +SPNTDGIHV  S  V I NS IG GDDCISIGPG++
Sbjct: 182 KFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGST 241

Query: 243 NMWIESITCGPGHGI 256
           N++I++I CGPGHGI
Sbjct: 242 NVFIQTIRCGPGHGI 250

[Close]
BLAST of CmaCh00G001040 vs. NCBI nr
Match: gi|659121214|ref|XP_008460550.1| (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 333.2 bits (853), Expect = 4.1e-88
Identity = 165/237 (69.62%), Postives = 189/237 (79.75%), Query Frame = 1 

Query: 19  LHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVP 78
           LH+ L L   F NH  AA  TFNIV+LGAK D  TDASP  Q AWA AC SSEPATIYVP
Sbjct: 7   LHL-LFLLFLFLNHGLAAGSTFNIVSLGAKADGMTDASPAFQEAWANACGSSEPATIYVP 66

Query: 79  EGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITGGIID 138
            G F+V S  F GPCKNNAITILI+GTL+ASS+IQVLA S +WI F HINGLSI GG+ID
Sbjct: 67  NGAFYVHSGNFTGPCKNNAITILINGTLMASSNIQVLAQSQAWIAFRHINGLSIYGGVID 126

Query: 139 GQGTPLWNCKHSRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVN 198
           GQG  LWNCKHS +SCP GA SL+I D +NVN+NGLSS+NSQ+F+IV+  CQNV +  VN
Sbjct: 127 GQGMGLWNCKHSGQSCPDGATSLEIFDSQNVNVNGLSSVNSQMFNIVVYGCQNVQIQGVN 186

Query: 199 VLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           V +A DSPNTDGIHV+QS +V I NSNIG GDDCISIGPGT+N+W+E+I CGPGHGI
Sbjct: 187 VSSASDSPNTDGIHVQQSLNVNISNSNIGTGDDCISIGPGTTNLWMENINCGPGHGI 242

[Close]
BLAST of CmaCh00G001040 vs. NCBI nr
Match: gi|449445220|ref|XP_004140371.1| (PREDICTED: polygalacturonase [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 3.2e-85
Identity = 157/233 (67.38%), Postives = 188/233 (80.69%), Query Frame = 1 

Query: 23  LSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSSEPATIYVPEGIF 82
           LSL   F NH  AA  TFNIV+LGA  D KTDAS   Q AWA AC SSEPATIYVP G F
Sbjct: 10  LSLLFLFLNHGLAAGSTFNIVSLGAIADGKTDASHAFQEAWANACGSSEPATIYVPNGAF 69

Query: 83  FVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGLSITGGIIDGQGT 142
           +++S  F+GPCKNNAITI+I+GTL+ASS+IQVLA S +WI F  INGLSI GG+IDGQG 
Sbjct: 70  YIQSGNFSGPCKNNAITIVINGTLIASSNIQVLAQSQAWIAFRQINGLSIYGGVIDGQGI 129

Query: 143 PLWNCKHSRKSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRCQNVHMTRVNVLAA 202
            LWNCKHS KSCP GA +L+I+  +NVN+NGLSSINSQ+F+IV+  C+NV +  VNV +A
Sbjct: 130 GLWNCKHSGKSCPDGATNLEISHAQNVNVNGLSSINSQMFNIVVYGCENVQIQGVNVSSA 189

Query: 203 GDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITCGPGHGI 256
           GDSPNTDGIHV+QS +V I +++IG GDDCISIGPGT+N+W+E+I CGPGHGI
Sbjct: 190 GDSPNTDGIHVQQSLNVNISSTSIGTGDDCISIGPGTTNLWMENIKCGPGHGI 242

[Close]
BLAST of CmaCh00G001040 vs. NCBI nr
Match: gi|87242603|gb|ABD33834.1| (polygalacturonase [Prunus domestica subsp. insititia])

HSP 1 Score: 302.4 bits (773), Expect = 7.7e-79
Identity = 145/246 (58.94%), Postives = 183/246 (74.39%), Query Frame = 1 

Query: 11  FSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSS 70
           FS+SL+ +         F  N A A  +T+N+ +LGAK D KTD++    +AWAKAC S 
Sbjct: 8   FSLSLIFV---------FMINSAIATPVTYNVASLGAKADGKTDSTKAFLSAWAKACASM 67

Query: 71  EPATIYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGL 130
            P  IYVP G FF+R V+F+GPCKNNAIT  I GTLVA SD QV+ N+++WI F+H+NG+
Sbjct: 68  NPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYQVIGNAANWIFFHHVNGV 127

Query: 131 SITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRC 190
           +I+GGI+DGQGT LW CK S  KSCP GA +L  +D  N+ ++GL+S+NSQ+F IV+N C
Sbjct: 128 TISGGILDGQGTALWACKASNGKSCPSGATTLSFSDSNNIVVSGLASVNSQMFHIVINDC 187

Query: 191 QNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITC 250
           QNV M  V V A+G+SPNTDGIHV+ SS VTILNS I  GDDC+SIGPGTSN+WIES+ C
Sbjct: 188 QNVQMQGVKVSASGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIESVAC 244

Query: 251 GPGHGI 256
           GPGHGI
Sbjct: 248 GPGHGI 244

[Close]
BLAST of CmaCh00G001040 vs. NCBI nr
Match: gi|645241809|ref|XP_008227253.1| (PREDICTED: polygalacturonase [Prunus mume])

HSP 1 Score: 300.4 bits (768), Expect = 2.9e-78
Identity = 144/246 (58.54%), Postives = 183/246 (74.39%), Query Frame = 1 

Query: 11  FSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSS 70
           FS+SL+ +         F  N A A  +T+N+ +LGAK D KTD++    +AWAKAC S 
Sbjct: 8   FSLSLIFV---------FMINSAIATPVTYNVASLGAKADGKTDSTKAFLSAWAKACASM 67

Query: 71  EPATIYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGL 130
            P  IYVP G FF+R V+F+GPCKNNAIT  I GTLVA SD +V+ N+++WI F+H+NG+
Sbjct: 68  NPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGV 127

Query: 131 SITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRC 190
           +I+GGI+DGQGT LW CK S  KSCP GA +L  +D  N+ ++GL+S+NSQ+F IV+N C
Sbjct: 128 TISGGILDGQGTALWACKASNGKSCPSGATTLSFSDSNNIVVSGLASLNSQMFHIVINDC 187

Query: 191 QNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITC 250
           QNV M  V V A+G+SPNTDGIHV+ SS VTILNS I  GDDC+SIGPGTSN+WIES+ C
Sbjct: 188 QNVQMQGVRVSASGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIESVAC 244

Query: 251 GPGHGI 256
           GPGHGI
Sbjct: 248 GPGHGI 244

[Close]
BLAST of CmaCh00G001040 vs. NCBI nr
Match: gi|315143143|gb|ADT82706.1| (endopolygalacturonase [Prunus armeniaca])

HSP 1 Score: 299.3 bits (765), Expect = 6.5e-78
Identity = 144/246 (58.54%), Postives = 183/246 (74.39%), Query Frame = 1 

Query: 11  FSVSLLVILHVFLSLQLFFFNHASAAELTFNIVTLGAKPDEKTDASPVLQTAWAKACDSS 70
           FS+SL+ +         F  N A A  +T+N+ +LGAK D KTD++    +AWAKAC S 
Sbjct: 8   FSLSLIFV---------FMINSAIATPVTYNVASLGAKADGKTDSTKAFLSAWAKACASM 67

Query: 71  EPATIYVPEGIFFVRSVIFNGPCKNNAITILIDGTLVASSDIQVLANSSSWILFNHINGL 130
            P  IYVP G FF+R V+F+GPCKNNAIT  I GTLVA SD +V+ N+++WI F+H+NG+
Sbjct: 68  NPGVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGV 127

Query: 131 SITGGIIDGQGTPLWNCKHSR-KSCPIGARSLQINDEKNVNINGLSSINSQLFSIVMNRC 190
           +I+GGI+DGQGT LW CK S  +SCP GA +L  +D  N+ ++GL+S+NSQ+F IV+N C
Sbjct: 128 TISGGILDGQGTALWACKASHGESCPSGATTLSFSDSNNIVVSGLASLNSQMFHIVINDC 187

Query: 191 QNVHMTRVNVLAAGDSPNTDGIHVRQSSDVTILNSNIGNGDDCISIGPGTSNMWIESITC 250
           QNV M  V V A+G+SPNTDGIHV+ SS VTILNS I  GDDCISIGPGTSN+WIES+ C
Sbjct: 188 QNVQMQGVRVSASGNSPNTDGIHVQMSSGVTILNSKIATGDDCISIGPGTSNLWIESVAC 244

Query: 251 GPGHGI 256
           GPGHGI
Sbjct: 248 GPGHGI 244

The following BLAST results are available for this feature:
BLAST of CmaCh00G001040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_PRUPE2.5e-7756.91Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR6_ARATH2.0e-5544.71Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 S... [more]
PGLR2_MAIZE1.7e-4644.25Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR1_MAIZE1.7e-4644.25Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR3_MAIZE2.9e-4644.25Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
BLAST of CmaCh00G001040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN91_CUCSA2.2e-8567.38Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409610 PE=3 SV=1[more]
Q1A230_PRUDO5.3e-7958.94Polygalacturonase OS=Prunus domestica subsp. insititia PE=2 SV=1[more]
F6KPP9_PRUAR4.5e-7858.54Endopolygalacturonase OS=Prunus armeniaca GN=PG PE=2 SV=1[more]
M5VW01_PRUPE1.3e-7760.99Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007271mg PE=3 SV=1[more]
A0A0N9M5I6_PRUAR1.3e-7758.13Polygalacturonase OS=Prunus armeniaca GN=PG1 PE=2 SV=1[more]
BLAST of CmaCh00G001040 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G59850.11.1e-7051.85 Pectin lyase-like superfamily protein[more]
AT2G43870.12.0e-6951.28 Pectin lyase-like superfamily protein[more]
AT2G43890.14.6e-5846.06 Pectin lyase-like superfamily protein[more]
AT1G05650.17.9e-5844.54 Pectin lyase-like superfamily protein[more]
AT2G43860.11.1e-5644.71 Pectin lyase-like superfamily protein[more]
BLAST of CmaCh00G001040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121214|ref|XP_008460550.1|4.1e-8869.62PREDICTED: polygalacturonase-like [Cucumis melo][more]
gi|449445220|ref|XP_004140371.1|3.2e-8567.38PREDICTED: polygalacturonase [Cucumis sativus][more]
gi|87242603|gb|ABD33834.1|7.7e-7958.94polygalacturonase [Prunus domestica subsp. insititia][more]
gi|645241809|ref|XP_008227253.1|2.9e-7858.54PREDICTED: polygalacturonase [Prunus mume][more]
gi|315143143|gb|ADT82706.1|6.5e-7858.54endopolygalacturonase [Prunus armeniaca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001040.1CmaCh00G001040.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 67..255
score: 3.4
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 24..255
score: 2.84
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 25..255
score: 4.1
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..255
score: 1.2E
NoneNo IPR availablePANTHERPTHR31375:SF2POLYGALACTURONASE/PECTINASEcoord: 1..255
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh00G001040CmoCh00G001140Cucurbita moschata (Rifu)cmacmoB000
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh00G001040CmaCh00G002530Cucurbita maxima (Rimu)cmacmaB004
CmaCh00G001040CmaCh19G003520Cucurbita maxima (Rimu)cmacmaB017
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001040Cucurbita maxima (Rimu)cmacmaB002
CmaCh00G001040Cucurbita maxima (Rimu)cmacmaB006