Cucsa.379710.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTCTCAAATCCCTAAAATCCACCATGGCCTCCGTTTGCATTTCCAATTGCATCAACGACGCTCGTCTCCCCGTCCGTCCCACCTACATAAACCTCTACAAGTGGCCGGAATCCGACGCCGAGTTCATCCGATCCGTCAGTTCTAAGCTCAATCGAACTTCTCGAGTCGTCGATAGCATCTCTTGCCGTCAGATGTACCTCCGAAGCTACACTTTCTCTCGAGAAGAAGAGCACGCGCCAGAGACCAAGACTAATAAGTGTTTCGCTAAAGTCGGAATGCGCCAGAGAATCTCTCGCCGGAAAAAGAAGAAGACGGCGGCGTCTGAGTCCAGCGACGGCGATGAGAAGATTAGGAAATCTTCCAGGTTGAAGAAAGCGAAGGAGATTTCCTGCGCCGCTTTGACGTCTGTGTTCCGACGGTTGTTATCGTGCACCGCTAAAGTCGACGTCGCCGATACTATGCGAGAGGTTCATTAGTTAATTTTtTTTtCTCTTTTTCTTTTGGTTAAATTGCAAATTTCTCCTTTGGAAAAAAAAaGTGTAGGGACTAAATTCTAAAACTTAAAATTTTAGGGGTGAATTTGTAATTTAAAATTTCATTTTTCCTTTTTGGTTCATAGTCGTCGATGGAATTCAGCGAAGAAGAGGTGGGGATGGTGTACGGACATATTATTATGTAAATTAGATTTATTTTTtAAAAGTTTTTTTtAGAGAGATAATATTTTTTtATTTATAGTTTTCATGTGGAA ATTTTCTCAAATCCCTAAAATCCACCATGGCCTCCGTTTGCATTTCCAATTGCATCAACGACGCTCGTCTCCCCGTCCGTCCCACCTACATAAACCTCTACAAGTGGCCGGAATCCGACGCCGAGTTCATCCGATCCGTCAGTTCTAAGCTCAATCGAACTTCTCGAGTCGTCGATAGCATCTCTTGCCGTCAGATGTACCTCCGAAGCTACACTTTCTCTCGAGAAGAAGAGCACGCGCCAGAGACCAAGACTAATAAGTGTTTCGCTAAAGTCGGAATGCGCCAGAGAATCTCTCGCCGGAAAAAGAAGAAGACGGCGGCGTCTGAGTCCAGCGACGGCGATGAGAAGATTAGGAAATCTTCCAGGTTGAAGAAAGCGAAGGAGATTTCCTGCGCCGCTTTGACGTCTGTGTTCCGACGGTTGTTATCGTGCACCGCTAAAGTCGACGTCGCCGATACTATGCGAGAGGTTCATTAGTTAATTTTTTTTTCTCTTTTTCTTTTGGTTAAATTGCAAATTTCTCCTTTGGAAAAAAAAAGTGTAGGGACTAAATTCTAAAACTTAAAATTTTAGGGGTGAATTTGTAATTTAAAATTTCATTTTTCCTTTTTGGTTCATAGTCGTCGATGGAATTCAGCGAAGAAGAGGTGGGGATGGTGTACGGACatattattatgtaaattagatttattttttaaaagttttttttagagagataatatttttttatttataGTTTTCATGTGGAA ATGGCCTCCGTTTGCATTTCCAATTGCATCAACGACGCTCGTCTCCCCGTCCGTCCCACCTACATAAACCTCTACAAGTGGCCGGAATCCGACGCCGAGTTCATCCGATCCGTCAGTTCTAAGCTCAATCGAACTTCTCGAGTCGTCGATAGCATCTCTTGCCGTCAGATGTACCTCCGAAGCTACACTTTCTCTCGAGAAGAAGAGCACGCGCCAGAGACCAAGACTAATAAGTGTTTCGCTAAAGTCGGAATGCGCCAGAGAATCTCTCGCCGGAAAAAGAAGAAGACGGCGGCGTCTGAGTCCAGCGACGGCGATGAGAAGATTAGGAAATCTTCCAGGTTGAAGAAAGCGAAGGAGATTTCCTGCGCCGCTTTGACGTCTGTGTTCCGACGGTTGTTATCGTGCACCGCTAAAGTCGACGTCGCCGATACTATGCGAGAGGTTCATTAG MASVCISNCINDARLPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMYLRSYTFSREEEHAPETKTNKCFAKVGMRQRISRRKKKKTAASESSDGDEKIRKSSRLKKAKEISCAALTSVFRRLLSCTAKVDVADTMREVH*
BLAST of Cucsa.379710.1 vs. TrEMBL
Match: A0A0A0KET2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G302120 PE=4 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 5.9e-78 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. TrEMBL
Match: A0A061GYC9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041937 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 3.0e-37 Identity = 89/150 (59.33%), Postives = 105/150 (70.00%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. TrEMBL
Match: I1NA24_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G175800 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 9.6e-36 Identity = 88/154 (57.14%), Postives = 106/154 (68.83%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. TrEMBL
Match: A0A0B2NZA1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002419 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 9.6e-36 Identity = 88/154 (57.14%), Postives = 106/154 (68.83%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. TrEMBL
Match: A5AI93_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039550 PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35 Identity = 88/145 (60.69%), Postives = 106/145 (73.10%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. TAIR10
Match: AT5G02640.1 (AT5G02640.1 unknown protein) HSP 1 Score: 125.9 bits (315), Expect = 2.0e-29 Identity = 77/160 (48.12%), Postives = 98/160 (61.25%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. TAIR10
Match: AT3G46300.1 (AT3G46300.1 unknown protein) HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17 Identity = 61/151 (40.40%), Postives = 86/151 (56.95%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. TAIR10
Match: AT3G46310.1 (AT3G46310.1 unknown protein) HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13 Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. NCBI nr
Match: gi|449461017|ref|XP_004148240.1| (PREDICTED: uncharacterized protein LOC101218723 [Cucumis sativus]) HSP 1 Score: 298.1 bits (762), Expect = 8.5e-78 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. NCBI nr
Match: gi|659127952|ref|XP_008463974.1| (PREDICTED: uncharacterized protein LOC103501967 [Cucumis melo]) HSP 1 Score: 282.0 bits (720), Expect = 6.3e-73 Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. NCBI nr
Match: gi|590589869|ref|XP_007016573.1| (Uncharacterized protein TCM_041937 [Theobroma cacao]) HSP 1 Score: 162.9 bits (411), Expect = 4.3e-37 Identity = 89/150 (59.33%), Postives = 105/150 (70.00%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. NCBI nr
Match: gi|697138331|ref|XP_009623242.1| (PREDICTED: uncharacterized protein LOC104114489 [Nicotiana tomentosiformis]) HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35 Identity = 90/154 (58.44%), Postives = 102/154 (66.23%), Query Frame = 1
BLAST of Cucsa.379710.1 vs. NCBI nr
Match: gi|734316913|gb|KHN02395.1| (hypothetical protein glysoja_002419 [Glycine soja]) HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35 Identity = 88/154 (57.14%), Postives = 106/154 (68.83%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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