Cucsa.375230.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.GTACTTGCCTCTCTAACTCACTCAATGATCCCTCAACATGGATCATTGACTCTAGTGCCTCCTCACATATTTGCCATGACAAGTTTATGTTTACAAATCACTATAGCGCCCAAAATATGTTTGTTATCTTGTCCACTAAGACTCATCTAAAGGTTGAGCATATAGGATATATTTTCATATCAAATGATCTAGTATTGAAAGATGTACTTTATATTCCTGACTTCAAGTATAACCTACTGTCAATAAGTACTCTCCTCAAATATGACAAATTTGACATATCATTTGCTGATTCTAATTGTCTTATTCAGGACAAGTGGCTTTCGAAAATGATTTGGGAAGGTTGAATTAAATAATGAGCTCTACCTACTCAGAATGAAGAATGAAAGAGTTAATTGCATTAAGCACACTACACTAATGTGTAAAGTCTCGGCCTCTATGTGGCGTAAATGGATGGGACATCCCTCTATCAGCAGAATAAATGAGCTAGCTAAGATGATAGAAAATTCTGACTTTCCAAATATTACTATGACAACTTTCCAAAAAAATTAATATAATCATCTTTTAACTCAATTAAAAAAAATGAAAGTAATAAAATCGTCTTTGGCCATGTTTGTCCCTTAGCTAAACAAAAAACGTCTCTCTTTCCCTACATTGAATAATATTGCTGAAAATGTATTTGATCTTATACATTGTGATATATGGGGTCCTTTTAAAACTCCAACACATGGTGGTCATTCATATTTTACCACCACTGTAGACGGTAAATCTAGATACACTTGGGTATATCTTTTGAAACATAAGAATGATATTCTACAAGTTATTCCTAGATTTTTCAAGTTAATTGAAACCTAATTTTCAAAATTCATCAAAGTCTTTCGATCTGACAATGCTCCGGAGTTGAATTTTAAGGATCTTTTTGCCAAAACTGGAACAACTCATCAATTCTCGTGTGCTTACACTTCTCAGCAAAATTCAGTAGTGGAAAAAAAATATCAACACCTTTTTAACGTGGCAAGAGCATTGATGTTCCAATCAAAGGTTTCTCTTATCTTTTAGGGAGAATGTGTTCTAAGTGCTGCATACTTGATCAACAGAACACCTATAGTTTTACTATCAAATAACACTCCATTTGCTGCTCTGTTCAAGAAAGAAGCAGATTACAACATCATTAAGACCTTTGGGTGTCTTGCCTATGCCTCTACCCCCTTAGTAAACATATCTAAGTTTGATTCTAGAGCACAACCTTGTGTTTTTATGGGGTTCCCATCAGGCATAAAAGGATACAAATTACATGACATAGCCAAAAGAAAGTTCTTTATATCTAGGGATGTCCTATTCTTTGAAGAATTATTTCCCTTTCATTCTATCAAAGAAATGGACATTCACATCTCCCATGACTTCCTTGAGCAATTCATCATACCATACCCCCTATTTGATTGCCTAGAAAAGGAAGATATTAATATTACAACTACTGATGCAAGACCTGTGATAGAGAATACCCCTGAAGACAACTACATTGTTGATGATCAAAATCCACATGTCAGTAACTCAGAAGAAACCAATAACACTAACCAAGCACCAATTCCCATCATGACCAGAAAATCTTCCTGACCACGCCACCCACCATCTTACCTAAAAGACTTCCATTGCAACCTCACCTCCCAAAACTCAACTCCCTTTCCCCTTAACCAATACCTCTCCTACAATGCCTATTCCCAACACCATAAGAACTATATGTTCAGTGTTACCTCCATCTATGAACCCACATATTATAACCAAGCTGTGAAACATCAAACTTGGAGAAAAGCTATGGCTGAGGAAATAGAAGCTATGGAAAGAACCAACACATGGACAGTTGTATCCCTTCCAAAGGATCATCACATCGTTGGTAGCAAATGAGTGTACAAAGTAAAGTGCAAACCGGATGGTACCACTGATAGATACAAGGCAAGACTTGTAGCAAAGGGCTATAACTAAGAAGTAGGAATCGATTTTTTGGATAATTTTTCACCAATGGCGAAAATAAGCACTGTGAAGATATTCTTAGCTCTTGCCACATCCTATAATTGGTTCATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATTTGCTTATCTGTCCACTGCTTAAGCCAATTTTTACACAAGCCTACTAAACATCACCTAGATGTTGCTCATCACCTATTGAAGTACCTCAAAGGTTCCCTAGGACAAGGTGCTCTAATAAAACTTATTGATTCGTTTCACTTAAAAGCCTTCGTTGATGGTGGTCGGGGATCGTGCCTTGACACTAGAAGATTAGTCACAGGGTTCTGTATCTTCCTAGAGAATTCCATCATCTCCTGGAAATCTAAGAAACAAGCAACCGTCTCAAGATCCTCTGCAAAAGATGAATATAGAGCCTTAGCATCAATCACCATTGAGCTAGTATGGATCACACAACTCCTTACTGATTTTAAAGTAAAAACCTTGATGTCAGCCACTGTTTTTTGTCACAATCAAGCAACCATTGCTATTGCTTCGAATCTGACATTTCTTGAACGAACAAAACACATAGAAATTGATTGTCATTTTTTCGAGAAAAAATAGTTGAAGGGTTTCTAAAGGTTCGTATCAACACTAGCCTACAACTAGCTGATATGTTCACTAAAGCGCTACCTTCATCTACCTTAAACAAACATATATCCAAGTTGGGAATGAAGGACATTCATCGTCCAACTTGA gtacttgcctctctaactcactcaatgatccctcaacatggatcattgactctagtgcctcctcacatatttgccatgacaagtttatgtttacaaatcactatagcgcccaaaatatgtttgttatcttgtccactaagactcatctaaaggttgagcatataggatatattttcatatcaaatgatctagtattgaaagatgtactttatattcctgacttcaagtataacctactgtcaataagtactctcctcaaatatgacaaatttgacatatcatttgctgattctaattgtcttattcaggacaagtggctttcgaaaatgatttgggaagaatgtgttctaagtgctgcatacttgatcaacagaacacctatagttttactatcaaataacactccatttgctgctctgttcaagaaagaagcagattacaacatcattaagacctttgggtgtcttgcctatgcctctacccccttagtaaacatatctaagtttgattctagagcacaaccttgtgtttttatggggttcccatcaggcataaaaggatacaaattacatgacatagccaaaagaaagttctttatatctagggatgtcctattctttgaagaattatttccctttcattctatcaaagaaatggacattcacatctcccatgacttccttgagcaattcatcataccataccccctatttgattgcctagaaaaggaagatattaatattacaactactgatgcaagacctgtgatagagaatacccctgaagacaactacattgttgatgatcaaaatccacatgtcaacttccattgcaacctcacctcccaaaactcaactccctttccccttaaccaatacctctcctacaatgcctattcccaacaccataagaactatatgttcagtgttacctccatctatgaacccacatattataaccaagCTGTGAAACATCAAACTTGGAGAAAAGCTATGGCTGAGGAAATAGAAGCTATGGAAAGAACCAACACATGGACAGTTGTATCCCTTCCAAAGGATCATCACATCcctactaaacatcacctagatgttgctcatcacctattgaagtacctcaaaggttccctaggacaaggtgctctaataaaacttattgattcgtttcacttaaaagccttcgttgatggtggtcggggatcgtgccttgacactagaagattagtcacagggttctgtatcttcctagagaattccatcatctcctggaaatctaagaaacaagcaaccgtctcaagatcctctgcaaaagatgaatatagagccttagcatcaatcaccattgagctagtatggatcacacaactccttactgattttaaagtaaaaaccttgatgtcagccactgttttttgtcacaatcaagcaaccattgctattgcttcgaatctgacatttcttgaacgaacaaaacacatagaaattgattgtcattttttcgagaaaaaatacctacaactagctgatatgttcactaaagcgctaccttcatctaccttaaacaaacatatatccaagttgggaatgaaggacattcatcgtccaacttga GTACTTGCCTCTCTAACTCACTCAATGATCCCTCAACATGGATCATTGACTCTAGTGCCTCCTCACATATTTGCCATGACAAGTTTATGTTTACAAATCACTATAGCGCCCAAAATATGTTTGTTATCTTGTCCACTAAGACTCATCTAAAGGTTGAGCATATAGGATATATTTTCATATCAAATGATCTAGTATTGAAAGATGTACTTTATATTCCTGACTTCAAGTATAACCTACTGTCAATAAGTACTCTCCTCAAATATGACAAATTTGACATATCATTTGCTGATTCTAATTGTCTTATTCAGGACAAGTGGCTTTCGAAAATGATTTGGGAAGAATGTGTTCTAAGTGCTGCATACTTGATCAACAGAACACCTATAGTTTTACTATCAAATAACACTCCATTTGCTGCTCTGTTCAAGAAAGAAGCAGATTACAACATCATTAAGACCTTTGGGTGTCTTGCCTATGCCTCTACCCCCTTAGTAAACATATCTAAGTTTGATTCTAGAGCACAACCTTGTGTTTTTATGGGGTTCCCATCAGGCATAAAAGGATACAAATTACATGACATAGCCAAAAGAAAGTTCTTTATATCTAGGGATGTCCTATTCTTTGAAGAATTATTTCCCTTTCATTCTATCAAAGAAATGGACATTCACATCTCCCATGACTTCCTTGAGCAATTCATCATACCATACCCCCTATTTGATTGCCTAGAAAAGGAAGATATTAATATTACAACTACTGATGCAAGACCTGTGATAGAGAATACCCCTGAAGACAACTACATTGTTGATGATCAAAATCCACATGTCAACTTCCATTGCAACCTCACCTCCCAAAACTCAACTCCCTTTCCCCTTAACCAATACCTCTCCTACAATGCCTATTCCCAACACCATAAGAACTATATGTTCAGTGTTACCTCCATCTATGAACCCACATATTATAACCAAGCTGTGAAACATCAAACTTGGAGAAAAGCTATGGCTGAGGAAATAGAAGCTATGGAAAGAACCAACACATGGACAGTTGTATCCCTTCCAAAGGATCATCACATCCCTACTAAACATCACCTAGATGTTGCTCATCACCTATTGAAGTACCTCAAAGGTTCCCTAGGACAAGGTGCTCTAATAAAACTTATTGATTCGTTTCACTTAAAAGCCTTCGTTGATGGTGGTCGGGGATCGTGCCTTGACACTAGAAGATTAGTCACAGGGTTCTGTATCTTCCTAGAGAATTCCATCATCTCCTGGAAATCTAAGAAACAAGCAACCGTCTCAAGATCCTCTGCAAAAGATGAATATAGAGCCTTAGCATCAATCACCATTGAGCTAGTATGGATCACACAACTCCTTACTGATTTTAAAGTAAAAACCTTGATGTCAGCCACTGTTTTTTGTCACAATCAAGCAACCATTGCTATTGCTTCGAATCTGACATTTCTTGAACGAACAAAACACATAGAAATTGATTGTCATTTTTTCGAGAAAAAATACCTACAACTAGCTGATATGTTCACTAAAGCGCTACCTTCATCTACCTTAAACAAACATATATCCAAGTTGGGAATGAAGGACATTCATCGTCCAACTTGA TCLSNSLNDPSTWIIDSSASSHICHDKFMFTNHYSAQNMFVILSTKTHLKVEHIGYIFISNDLVLKDVLYIPDFKYNLLSISTLLKYDKFDISFADSNCLIQDKWLSKMIWEECVLSAAYLINRTPIVLLSNNTPFAALFKKEADYNIIKTFGCLAYASTPLVNISKFDSRAQPCVFMGFPSGIKGYKLHDIAKRKFFISRDVLFFEELFPFHSIKEMDIHISHDFLEQFIIPYPLFDCLEKEDINITTTDARPVIENTPEDNYIVDDQNPHVNFHCNLTSQNSTPFPLNQYLSYNAYSQHHKNYMFSVTSIYEPTYYNQAVKHQTWRKAMAEEIEAMERTNTWTVVSLPKDHHIPTKHHLDVAHHLLKYLKGSLGQGALIKLIDSFHLKAFVDGGRGSCLDTRRLVTGFCIFLENSIISWKSKKQATVSRSSAKDEYRALASITIELVWITQLLTDFKVKTLMSATVFCHNQATIAIASNLTFLERTKHIEIDCHFFEKKYLQLADMFTKALPSSTLNKHISKLGMKDIHRPT*
BLAST of Cucsa.375230.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 9.2e-18 Identity = 71/255 (27.84%), Postives = 115/255 (45.10%), Query Frame = 1
HSP 2 Score: 78.6 bits (192), Expect = 2.4e-13 Identity = 51/185 (27.57%), Postives = 85/185 (45.95%), Query Frame = 1
HSP 3 Score: 45.4 bits (106), Expect = 2.2e-03 Identity = 28/90 (31.11%), Postives = 48/90 (53.33%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 3.0e-16 Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 82.0 bits (201), Expect = 2.1e-14 Identity = 56/177 (31.64%), Postives = 91/177 (51.41%), Query Frame = 1
HSP 2 Score: 58.2 bits (139), Expect = 3.3e-07 Identity = 36/104 (34.62%), Postives = 51/104 (49.04%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. TrEMBL
Match: A0A0B2R0L1_GLYSO (Putative mitochondrial protein (Fragment) OS=Glycine soja GN=glysoja_018618 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 9.9e-43 Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. TrEMBL
Match: A0A151S4N9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_028510 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 2.9e-42 Identity = 97/192 (50.52%), Postives = 126/192 (65.62%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. TrEMBL
Match: A0A151RSQ9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_032868 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 3.8e-42 Identity = 96/192 (50.00%), Postives = 126/192 (65.62%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. TrEMBL
Match: A0A151RSQ9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_032868 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11 Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 1
HSP 2 Score: 180.3 bits (456), Expect = 6.4e-42 Identity = 117/386 (30.31%), Postives = 184/386 (47.67%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. TrEMBL
Match: A0A151RRW1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_033162 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 8.4e-42 Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8) HSP 1 Score: 130.6 bits (327), Expect = 2.9e-30 Identity = 67/166 (40.36%), Postives = 93/166 (56.02%), Query Frame = 1
HSP 2 Score: 53.5 bits (127), Expect = 4.6e-07 Identity = 25/77 (32.47%), Postives = 46/77 (59.74%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein) HSP 1 Score: 88.2 bits (217), Expect = 1.7e-17 Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. TAIR10
Match: ATMG00240.1 (ATMG00240.1 Gag-Pol-related retrotransposon family protein) HSP 1 Score: 51.2 bits (121), Expect = 2.3e-06 Identity = 23/51 (45.10%), Postives = 29/51 (56.86%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. NCBI nr
Match: gi|702429277|ref|XP_010068420.1| (PREDICTED: uncharacterized protein LOC104455307 [Eucalyptus grandis]) HSP 1 Score: 217.2 bits (552), Expect = 6.8e-53 Identity = 150/446 (33.63%), Postives = 219/446 (49.10%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. NCBI nr
Match: gi|950966888|ref|XP_014499195.1| (PREDICTED: uncharacterized protein LOC106760245 [Vigna radiata var. radiata]) HSP 1 Score: 207.2 bits (526), Expect = 7.0e-50 Identity = 148/536 (27.61%), Postives = 255/536 (47.57%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. NCBI nr
Match: gi|727473302|ref|XP_010518614.1| (PREDICTED: uncharacterized protein LOC104793888 [Camelina sativa]) HSP 1 Score: 197.2 bits (500), Expect = 7.3e-47 Identity = 126/397 (31.74%), Postives = 191/397 (48.11%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. NCBI nr
Match: gi|971549811|ref|XP_015164069.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Solanum tuberosum]) HSP 1 Score: 183.7 bits (465), Expect = 8.3e-43 Identity = 102/234 (43.59%), Postives = 137/234 (58.55%), Query Frame = 1
BLAST of Cucsa.375230.1 vs. NCBI nr
Match: gi|734392015|gb|KHN27506.1| (Putative mitochondrial protein, partial [Glycine soja]) HSP 1 Score: 183.0 bits (463), Expect = 1.4e-42 Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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