Cucsa.365960.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TACACAACTCTCCATGGGATCCCCCTCCCCTCACCTCAATCTCTCCTTCAAGGTTCTCCTTATCGGCGATTCCGCCGTCGGCAAAAGCAGCCTTCTCCACACCTTCATTTCCGCCTCTCTCCACGATCTCTCTCCCACCATTGGTACTTCTTCCTTCAACCCCcTATTATCTTCCCTTTTCTCTTTCCCCAAACTATACCTCTTTTTTTTTttGGAATTCACATTACTAGTTTATTCACGGAATTTGTGTTTTCTGTCTTCTTTAGGTGTGGATTTCAAGATCAAGCAACTTACCGTTGCTGGGAAGAGGTTGAAGTTGACTATTTGGGACACTGGTAATGAATTTAATTCAATTTTTAATGGATCTTTTAGTTTTTCGATCCTTTTAAAGTTTTGAATGTAGCCTATAGCATGTTTTCTGTCCAATGTACTTAGTAAGATTGTTTTTGGCTCTATAGTTGACGAATTTTGCGATCGGACATCTGGGGTTAAATATATATATATATACACTTTTTTtGGGATCTCGGCATATTGATACATAGGTAGTTGAATCAAATTTCGTTGTGATATTTTTGCAAGGACCAAATAGTATATTTTAATAGATTGTGGGCATGGAATTCTCAACCGTCTTTAATTTTACTCAAAAGGAAAAGTGGCTGACTTTCTAAAGATTTAACATGGTGCAGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGCTATCGAATAACACTCTTGTGCTCCAACATATATGCATTCTGTGATTTAGTGTCAGCTTTCTGTGTTCATCCAATGTGTCAAACATATCAAATGATGCTATTACAATGAAGCTTAACTTAGCTTCTTTTGAAAGTGCTAATAGTGTATCGATTGAGTTTCGTAATTCCACTGAATTAGGAGAAGGATGTGCAGAAGATAGTTTGTTATGTTTCGTCTTGTGCTATAAAACCTCGTTTGCAATCATCCGAACAGGAAATTCTGCATTGATTCCTTTTGTTGAATAACTTGAATTCTCTCTGCACTAGTTCTTTCAGTCATTTGATGAGAATCCATGAAGAAGACACTGAAGTTGCACAGTTACGCTTTCGTGAAGTTTCTTGATTAGAAATTGAAATATCTGATTGGTTGGTTTTTTTGGACAGAACTTTGTTGTTTATGTTTCATTCGTATCTTTTTCTTTCTTTTCCACTTCCTCTTCTTATTGCAGTGCACATCAAATTCTCCTTTAATTCTAGAGTGGCAGTTATTTGTCAAATATGTTAGTTCTCACCAAATTCTTTAGATCCTAAAGCACAAGTTCGTGAAGAATTCCGGAGTGGCACTTTTTCATACAACATTATCTTTGGTTTACTGACATTGTTGTGTTCTTGTTGATCTTAGTTTATGATGTGACTCGGAGAGAAACCTTTGCAAACTTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAGACCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGAGTAAGTCCAGTCAATCCAGTTTATAAATGTATAAATTAGAATTACTACGTTTATAATGGATGAAAAATGATGGATCAGACACTAACATTTTTGGGAAAAATTGCATGTTGATCTCATACGATTTTGGATCATTTAATATTTGTTGACATTTTGTTTTGTTTTGTTATTTCCCCTCCCTGCAATAATCTGGAAAGTACAATTAATCTATACTGTAGATTTACGGTAAATGTAAAAGAAAAATGTCAGTGCACTTTTTTCTTTTTtACGTGTTGCAATAATCTCAGGAATCTGAAAGGGTTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTCTGTTTTTTGAGTGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCCATTAAGGTACTTTTTAACACAACAGTTATCATCTACTTGCATTAAAAAGAAAaCTAATGACATTTTACTTGTGAATGTGATATGTTGGTGGTGGACAGAGAAAATAATTGTAAAAGTTTGAGTCTAGAAATGGTCGTTTTGTTGTTTCTTTTTTATACAAATGGATAACTGTTTGATGAAACTTGTAGCCAAAGATAATAGCGATTAGTTCTGGGGGGAGCCATAGAGAGGGACGAGATTCTGCCTTTTCAATCCTTTATGTATGATTTTCTAATTGTGAATATTTAGGAGGGCATATGAGTGAAAAAACATAAATTGACGTTATTGTGTTTAAGAAAACTACCTTTTTAGTTCTTAAGTTTTCAAAAATAGATGCTCTGGTTCCTTGTAAtTTTTTAGTTTTTAAGAATAGACTTTAAAGGTCCCAGTGTGCGATTTACTTTTATTATTCTTAAGGTTGAGATGATACTTTAAATTAAAAAGAATGATTAAAAAaTTCTCTCCTCTTCCTACCCTCCTTCCATCTTCATGTTTAATTACTATATATTGTTGGAACTCAAGTACTAAAAAGGTAATTTTCCTTAATGTTTTTATACAATATCTTCCTTCCTTCTTTGCTCCTTCGGCCATTAACCATCCTGGATCAGTTTTCTAGATATGGATTTCAAATATTTTGCCCTGTAGTAAATTTCGCAAGCGAACATGTTTAGAATTGTGTTCATAGAAAGGCAGCTCCCAAGAATCTGAGAGTTGTGAAACTATTGCTTAGAAACTTCCCATATTTAATTTTTGTACAGATTATGGAGGTTCCTAGTTTCTTGGAGGAAAGATCCAGTTTAGTAAAGAGGAACATTTTAAGGCAAAAACAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAG TACACAACTCTCCATGGGATCCCCCTCCCCTCACCTCAATCTCTCCTTCAAGGTTCTCCTTATCGGCGATTCCGCCGTCGGCAAAAGCAGCCTTCTCCACACCTTCATTTCCGCCTCTCTCCACGATCTCTCTCCCACCATTGGTGTGGATTTCAAGATCAAGCAACTTACCGTTGCTGGGAAGAGGTTGAAGTTGACTATTTGGGACACTGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGTTTATGATGTGACTCGGAGAGAAACCTTTGCAAACTTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAGACCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGAGAATCTGAAAGGGTTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTCTGTTTTTTGAGTGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCCATTAAGATTATGGAGGTTCCTAGTTTCTTGGAGGAAAGATCCAGTTTAGTAAAGAGGAACATTTTAAGGCAAAAACAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAG ATGGGATCCCCCTCCCCTCACCTCAATCTCTCCTTCAAGGTTCTCCTTATCGGCGATTCCGCCGTCGGCAAAAGCAGCCTTCTCCACACCTTCATTTCCGCCTCTCTCCACGATCTCTCTCCCACCATTGGTGTGGATTTCAAGATCAAGCAACTTACCGTTGCTGGGAAGAGGTTGAAGTTGACTATTTGGGACACTGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGTTTATGATGTGACTCGGAGAGAAACCTTTGCAAACTTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAGACCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGAGAATCTGAAAGGGTTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTCTGTTTTTTGAGTGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGCTTTGAAGAACTTGCCATTAAGATTATGGAGGTTCCTAGTTTCTTGGAGGAAAGATCCAGTTTAGTAAAGAGGAACATTTTAAGGCAAAAACAGGAAGGTCAAGCTCAACAAAGTGGTGGTTGTTGCTCTTAG MGSPSPHLNLSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVAGKRLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQDCVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVPSFLEERSSLVKRNILRQKQEGQAQQSGGCCS*
BLAST of Cucsa.365960.1 vs. Swiss-Prot
Match: RAC2A_ARATH (Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 1.2e-85 Identity = 161/210 (76.67%), Postives = 181/210 (86.19%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. Swiss-Prot
Match: RAC2B_ARATH (Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 1.7e-76 Identity = 151/210 (71.90%), Postives = 173/210 (82.38%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. Swiss-Prot
Match: RABC1_ARATH (Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 9.7e-72 Identity = 138/211 (65.40%), Postives = 164/211 (77.73%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 4.4e-48 Identity = 110/200 (55.00%), Postives = 136/200 (68.00%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 4.4e-48 Identity = 106/200 (53.00%), Postives = 135/200 (67.50%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TrEMBL
Match: A0A0A0KAL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016920 PE=4 SV=1) HSP 1 Score: 409.8 bits (1052), Expect = 1.9e-111 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TrEMBL
Match: V4SM34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012751mg PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 1.3e-86 Identity = 169/211 (80.09%), Postives = 186/211 (88.15%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TrEMBL
Match: A0A067DLS1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028300mg PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 1.3e-86 Identity = 169/211 (80.09%), Postives = 186/211 (88.15%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TrEMBL
Match: D7TIU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g04740 PE=4 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 1.7e-86 Identity = 166/204 (81.37%), Postives = 182/204 (89.22%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TrEMBL
Match: A0A0D2SGR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G412800 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 2.4e-85 Identity = 162/207 (78.26%), Postives = 180/207 (86.96%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TAIR10
Match: AT5G03530.1 (AT5G03530.1 RAB GTPase homolog C2A) HSP 1 Score: 317.4 bits (812), Expect = 6.6e-87 Identity = 161/210 (76.67%), Postives = 181/210 (86.19%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TAIR10
Match: AT3G09910.1 (AT3G09910.1 RAB GTPase homolog C2B) HSP 1 Score: 287.0 bits (733), Expect = 9.6e-78 Identity = 151/210 (71.90%), Postives = 173/210 (82.38%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TAIR10
Match: AT1G43890.1 (AT1G43890.1 RAB GTPASE HOMOLOG B18) HSP 1 Score: 271.2 bits (692), Expect = 5.5e-73 Identity = 138/211 (65.40%), Postives = 164/211 (77.73%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TAIR10
Match: AT3G11730.1 (AT3G11730.1 Ras-related small GTP-binding family protein) HSP 1 Score: 163.7 bits (413), Expect = 1.2e-40 Identity = 94/197 (47.72%), Postives = 123/197 (62.44%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. TAIR10
Match: AT5G59840.1 (AT5G59840.1 Ras-related small GTP-binding family protein) HSP 1 Score: 158.7 bits (400), Expect = 3.9e-39 Identity = 95/200 (47.50%), Postives = 125/200 (62.50%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. NCBI nr
Match: gi|449441211|ref|XP_004138376.1| (PREDICTED: ras-related protein RABC2a-like [Cucumis sativus]) HSP 1 Score: 409.8 bits (1052), Expect = 2.8e-111 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. NCBI nr
Match: gi|659126228|ref|XP_008463077.1| (PREDICTED: ras-related protein RABC2a-like [Cucumis melo]) HSP 1 Score: 406.4 bits (1043), Expect = 3.1e-110 Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. NCBI nr
Match: gi|502176741|ref|XP_004515929.1| (PREDICTED: ras-related protein RABC2a-like [Cicer arietinum]) HSP 1 Score: 328.9 bits (842), Expect = 6.2e-87 Identity = 165/207 (79.71%), Postives = 184/207 (88.89%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. NCBI nr
Match: gi|567871755|ref|XP_006428467.1| (hypothetical protein CICLE_v10012751mg [Citrus clementina]) HSP 1 Score: 327.4 bits (838), Expect = 1.8e-86 Identity = 169/211 (80.09%), Postives = 186/211 (88.15%), Query Frame = 1
BLAST of Cucsa.365960.1 vs. NCBI nr
Match: gi|225441147|ref|XP_002267276.1| (PREDICTED: ras-related protein RABC2a [Vitis vinifera]) HSP 1 Score: 327.0 bits (837), Expect = 2.4e-86 Identity = 166/204 (81.37%), Postives = 182/204 (89.22%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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