Cucsa.362200.3 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.tGTTTTTTTtGGTGAGTTAATGGGATGAGGAATTGGAAAAGAAAGAGTATTTGATTACTACAAGAAGAGTTGGTTGTTCCCCATCGTACAAAATCGATCGATAGTGTGTTGCTGTTCGTTGTTCATCCCCAAACAAAAAGAGATGGTGTGAAGAATCAAAGCATTTTAGCTAATTTTTTACGACTCCTAAATTCCTCAGCCACAAaCCAACGGAGCTTCACAGCCACACAAATGGCCTCCTCTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTGAATCCTCAACCCTTATCCCTTCACCCACCCTTCTCTTTCCTTCTTCAATCCTCCACCTTTTACTtCCCTTTCTCTATCCCCTTCTTTCTCCGTTCTTATTCACTAAAACCCATTTTTCCTCTTCTTCCTCCTTTCCATCTCTCCGGCGCTACTGTTCTACTGGCGGTTTAATTTCATGGGTTTCTTGATCTTGGAGTAGGAAACAGGGAAGTGGGGTTTCTGCGAATCTATTCAAAATCTTAGTTGTTGTTCAGAGGGAGAAGATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGTAATTACCATCTCTCTTGCTTTACCTTGGTATATTGCTCTTTCATTTGCTAGTTTTGTCGATCTGATGGTCTTTGTTCTGATTTGATGTGTATAAATTAACGATCTTGAGTGTAGGGATGATTATCTCAATAAAATTTACTTAAATCACTACGAAATCCAAAGCTTTGAGCTTTTGTGTATACTCTTAGCACTCTCTCTCACTCGTGAGTATGAAAGTTGGTGACTAGCGATGTTAATCGGGAGGGAAACAAGGTGGAAGAAGTTTGAACACTGGACATTTGGTTGTTACTTGACTTTGAGTAGTTGGAGCTTGAATATAGAATCTTTGATACCACACTAAATTTATCTGTATGCTAAAAGATTTGAGCTTATAAACTATGGAAAATTTGATTTTTTtGTATATAATCTCTCAACACATGACATGATATAATATCAACACGTCTGGTCACTTCATTCTCCCTGATGTCATATCATTTAACACTCCTTGATTGTCAGATGATACTTCGATACTGATTTTAAATTTGCTTCCAGATCTAGAATTGGCATTTCTTTTGAATAAACCAGATAAATATCTCTAATCATGCTTCGTCCTTATGATATTTTGATTTTACATTTTTTATAATGGTTTAGATTTTCTTTCTATTTGTGAAATGTTAGACTTAGGGAATCCTATATGAAGTGCATGCATCATGATTTGTTTATGCAGTTAACTGTTAAGGTCTCTAATTGATGTAGTTGTCAGTGGGTAATGACACTGAAAACATGGTTGACCAATATTTGGAAGAAGAGAAAAAAATGAAAAGATATATCATATATGTAAGTTATAAATCACCATTGTTAGTTAAATACTTAAATTATAGTAAGTTAATTGTAGAGAGTCAGAATTGAATTTTTCTAATTTACCTTGAAGGATGTCCATTTTTTTGTATAAATTAGGAAGACTTTTACATGAGATGTAATGTGCTGAGTATTTTATGTCTCATCTGGAATCAGGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGGTTAGTAACAGCTAGATGCTCACCTTCTAGGCATCCATTTATTTACATTTTGTGGATCATAATGCAACAGAGGAAGTGCGCTTCTTTATACTCTTGAAGAATTTATACCATCATCTTTAGTTTAAATAGTTCTCACTACTTAGAAGGCATAAGTTTTTGAATGCTTACATTCCTCTTCCTGCATATGTTCACTGGTGACCGCCATTTTTTTtCTCCCAAAGATCACATACACACTAATTTTATTAAAAGGTTCCTAAATATTAGATCATTAGTTCGAATCCATACCCTGTAGTTTCTTCTGAGATTTTTGTCATAGGATTTGCATTAGTTTCCATCTACTTTAAGATTATTTGGGATACGCACTTAATCCTCCACCACCATAACTGCAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTtACGGTTCCTGATCTTGGATGAACAGAAGAGAGTGGCATTGATGTTGAGTTGGTATGCTTAATGAATAATAATAATACAGTTTTATAACCTTACAAAATGTGTATGTATGTAGTGTTTTCAACATCTATGGTTTGATAGTATGCAATATAGTATTCTTCTTTTATCTTATGCTTAGAATATATTCGCTCACTCCTCCTGGTTACTTTTGCTTTTGTATCTTATTAACCTTATTGTAACTTTTTGAATCTTATATGAAAAGTGTAAGATTATTTTAAAGAATGTCAACCATGTTTTGAAAGATTGAAGCTATTTGTTTtCTTGCACTTCCTCCTCTCCCCCTCCCCCACACATGGGCTGAAGGGTCAACACATGTTCGAGATTCTTTATCTCCGATACTTGTTGGACATGTATCATATACCTGTTTGACTCATGTTAAACCTTTGAAAATGCATATTTTAATGCTTTGTTGCGTTCATGTTTTAGATTTTTAAAAGTAATGCCACCAAGTTTATGTGCTTCTCTCGTCTTTGCTCATGTTCTTACAGCTAGGGTTATTGATCAGGATGGGACTCTAAAGACAGAGATAAAAGAGAGAAATTTTACAAATGTGACTTTTGTCATTAGTTTACTAAATTGTGGGATGTTGAAACACCATTTCATTTT TGTTTTTTTTGGTGAGTTAATGGGATGAGGAATTGGAAAAGAAAGAGTATTTGATTACTACAAGAAGAGTTGGTTGTTCCCCATCGTACAAAATCGATCGATAGTGTGTTGCTGTTCGTTGTTCATCCCCAAACAAAAAGAGATGGTGTGAAGAATCAAAGCATTTTAGCTAATTTTTTACGACTCCTAAATTCCTCAGCCACAAACCAACGGAGCTTCACAGCCACACAAATGGCCTCCTCTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTGAATCCTCAACCCTTATCCCTTCACCCACccttctctttccttcttcaatcctccaccttttacttccctttctctatccccttctttctccgttcttattcactaaaacccatttttcctcttcttcctcctttccatctcTCCGGCGCTACTGTTCTACTGGCGGTTTAATTTCATGGGTTTCTTGATCTTGGAGTAGGAAACAGGGAAGTGGGGTTTCTGCGAATCTATTCAAAATCTTAGTTGTTGTTCAGAGGGAGAAGATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGAACAGAAGAGAGTGGCATTGATGTTGAGTTGCTAGGGTTATTGATCAGGATGGGACTCTAAAGACAGAGATAAAAGAGAGAAATTTTACAAATGTGACTTTTGTCATTAGTTTACTAAATTGTGGGATGTTGAAACACCATTTCATTTT ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTtACGGTTCCTGATCTTGGATGA MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSYSGNAIACRPTKSSTSYKKPRLEMVDDEEFFTVPDLG*
BLAST of Cucsa.362200.3 vs. Swiss-Prot
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 1.5e-84 Identity = 160/248 (64.52%), Postives = 193/248 (77.82%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. Swiss-Prot
Match: BBX25_ARATH (B-box zinc finger protein 25 OS=Arabidopsis thaliana GN=BBX25 PE=1 SV=2) HSP 1 Score: 295.8 bits (756), Expect = 4.2e-79 Identity = 158/241 (65.56%), Postives = 182/241 (75.52%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. Swiss-Prot
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2) HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33 Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. Swiss-Prot
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 9.4e-31 Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. Swiss-Prot
Match: BBX23_ARATH (B-box zinc finger protein 23 OS=Arabidopsis thaliana GN=BBX23 PE=2 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 8.8e-29 Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TrEMBL
Match: A0A0A0KBS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081450 PE=4 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 3.5e-133 Identity = 236/237 (99.58%), Postives = 236/237 (99.58%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TrEMBL
Match: B3TLK3_CUCSA (Putative transcription factor OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 480.3 bits (1235), Expect = 1.3e-132 Identity = 235/237 (99.16%), Postives = 235/237 (99.16%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TrEMBL
Match: E5GC89_CUCME (Salt-tolerance protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 478.4 bits (1230), Expect = 5.0e-132 Identity = 233/237 (98.31%), Postives = 236/237 (99.58%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TrEMBL
Match: A0A061EKC2_THECC (COL domain class transcription factor isoform 1 OS=Theobroma cacao GN=TCM_020013 PE=4 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 7.6e-104 Identity = 186/238 (78.15%), Postives = 204/238 (85.71%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TrEMBL
Match: A0A061EJL3_THECC (COL domain class transcription factor isoform 2 OS=Theobroma cacao GN=TCM_020013 PE=4 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 1.9e-102 Identity = 186/239 (77.82%), Postives = 204/239 (85.36%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TAIR10
Match: AT1G06040.1 (AT1G06040.1 B-box zinc finger family protein) HSP 1 Score: 313.9 bits (803), Expect = 8.3e-86 Identity = 160/248 (64.52%), Postives = 193/248 (77.82%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TAIR10
Match: AT2G31380.1 (AT2G31380.1 salt tolerance homologue) HSP 1 Score: 295.8 bits (756), Expect = 2.3e-80 Identity = 158/241 (65.56%), Postives = 182/241 (75.52%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TAIR10
Match: AT1G78600.2 (AT1G78600.2 light-regulated zinc finger protein 1) HSP 1 Score: 144.1 bits (362), Expect = 1.1e-34 Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TAIR10
Match: AT1G75540.1 (AT1G75540.1 salt tolerance homolog2) HSP 1 Score: 135.2 bits (339), Expect = 5.3e-32 Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. TAIR10
Match: AT4G10240.1 (AT4G10240.1 B-box zinc finger family protein) HSP 1 Score: 128.6 bits (322), Expect = 5.0e-30 Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. NCBI nr
Match: gi|778711409|ref|XP_011656726.1| (PREDICTED: B-box zinc finger protein 24-like isoform X2 [Cucumis sativus]) HSP 1 Score: 486.9 bits (1252), Expect = 2.0e-134 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. NCBI nr
Match: gi|659120149|ref|XP_008460039.1| (PREDICTED: salt tolerance protein-like isoform X2 [Cucumis melo]) HSP 1 Score: 483.0 bits (1242), Expect = 2.9e-133 Identity = 233/236 (98.73%), Postives = 236/236 (100.00%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. NCBI nr
Match: gi|700191100|gb|KGN46304.1| (hypothetical protein Csa_6G081450 [Cucumis sativus]) HSP 1 Score: 482.3 bits (1240), Expect = 5.0e-133 Identity = 236/237 (99.58%), Postives = 236/237 (99.58%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. NCBI nr
Match: gi|821595467|ref|NP_001295820.1| (B-box zinc finger protein 24-like [Cucumis sativus]) HSP 1 Score: 480.3 bits (1235), Expect = 1.9e-132 Identity = 235/237 (99.16%), Postives = 235/237 (99.16%), Query Frame = 1
BLAST of Cucsa.362200.3 vs. NCBI nr
Match: gi|659120145|ref|XP_008460037.1| (PREDICTED: salt tolerance protein-like isoform X1 [Cucumis melo]) HSP 1 Score: 478.4 bits (1230), Expect = 7.2e-132 Identity = 233/237 (98.31%), Postives = 236/237 (99.58%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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