Cucsa.362200.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.tGTTTTTTTtGGTGAGTTAATGGGATGAGGAATTGGAAAAGAAAGAGTATTTGATTACTACAAGAAGAGTTGGTTGTTCCCCATCGTACAAAATCGATCGATAGTGTGTTGCTGTTCGTTGTTCATCCCCAAACAAAAAGAGATGGTGTGAAGAATCAAAGCATTTTAGCTAATTTTTTACGACTCCTAAATTCCTCAGCCACAAaCCAACGGAGCTTCACAGCCACACAAATGGCCTCCTCTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTGAATCCTCAACCCTTATCCCTTCACCCACCCTTCTCTTTCCTTCTTCAATCCTCCACCTTTTACTtCCCTTTCTCTATCCCCTTCTTTCTCCGTTCTTATTCACTAAAACCCATTTTTCCTCTTCTTCCTCCTTTCCATCTCTCCGGCGCTACTGTTCTACTGGCGGTTTAATTTCATGGGTTTCTTGATCTTGGAGTAGGAAACAGGGAAGTGGGGTTTCTGCGAATCTATTCAAAATCTTAGTTGTTGTTCAGAGGGAGAAGATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGTAATTACCATCTCTCTTGCTTTACCTTGGTATATTGCTCTTTCATTTGCTAGTTTTGTCGATCTGATGGTCTTTGTTCTGATTTGATGTGTATAAATTAACGATCTTGAGTGTAGGGATGATTATCTCAATAAAATTTACTTAAATCACTACGAAATCCAAAGCTTTGAGCTTTTGTGTATACTCTTAGCACTCTCTCTCACTCGTGAGTATGAAAGTTGGTGACTAGCGATGTTAATCGGGAGGGAAACAAGGTGGAAGAAGTTTGAACACTGGACATTTGGTTGTTACTTGACTTTGAGTAGTTGGAGCTTGAATATAGAATCTTTGATACCACACTAAATTTATCTGTATGCTAAAAGATTTGAGCTTATAAACTATGGAAAATTTGATTTTTTtGTATATAATCTCTCAACACATGACATGATATAATATCAACACGTCTGGTCACTTCATTCTCCCTGATGTCATATCATTTAACACTCCTTGATTGTCAGATGATACTTCGATACTGATTTTAAATTTGCTTCCAGATCTAGAATTGGCATTTCTTTTGAATAAACCAGATAAATATCTCTAATCATGCTTCGTCCTTATGATATTTTGATTTTACATTTTTTATAATGGTTTAGATTTTCTTTCTATTTGTGAAATGTTAGACTTAGGGAATCCTATATGAAGTGCATGCATCATGATTTGTTTATGCAGTTAACTGTTAAGGTCTCTAATTGATGTAGTTGTCAGTGGGTAATGACACTGAAAACATGGTTGACCAATATTTGGAAGAAGAGAAAAAAATGAAAAGATATATCATATATGTAAGTTATAAATCACCATTGTTAGTTAAATACTTAAATTATAGTAAGTTAATTGTAGAGAGTCAGAATTGAATTTTTCTAATTTACCTTGAAGGATGTCCATTTTTTTGTATAAATTAGGAAGACTTTTACATGAGATGTAATGTGCTGAGTATTTTATGTCTCATCTGGAATCAGGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGGTTAGTAACAGCTAGATGCTCACCTTCTAGGCATCCATTTATTTACATTTTGTGGATCATAATGCAACAGAGGAAGTGCGCTTCTTTATACTCTTGAAGAATTTATACCATCATCTTTAGTTTAAATAGTTCTCACTACTTAGAAGGCATAAGTTTTTGAATGCTTACATTCCTCTTCCTGCATATGTTCACTGGTGACCGCCATTTTTTTtCTCCCAAAGATCACATACACACTAATTTTATTAAAAGGTTCCTAAATATTAGATCATTAGTTCGAATCCATACCCTGTAGTTTCTTCTGAGATTTTTGTCATAGGATTTGCATTAGTTTCCATCTACTTTAAGATTATTTGGGATACGCACTTAATCCTCCACCACCATAACTGCAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTtACGGTTCCTGATCTTGGATGAACAGAAGAGAGTGGCATTGATGTTGAGTTGGTATGCTTAATGAATAATAATAATACAGTTTTATAACCTTACAAAATGTGTATGTATGTAGTGTTTTCAACATCTATGGTTTGATAGTATGCAATATAGTATTCTTCTTTTATCTTATGCTTAGAATATATTCGCTCACTCCTCCTGGTTACTTTTGCTTTTGTATCTTATTAACCTTATTGTAACTTTTTGAATCTTA TGTTTTTTTTGGTGAGTTAATGGGATGAGGAATTGGAAAAGAAAGAGTATTTGATTACTACAAGAAGAGTTGGTTGTTCCCCATCGTACAAAATCGATCGATAGTGTGTTGCTGTTCGTTGTTCATCCCCAAACAAAAAGAGATGGTGTGAAGAATCAAAGCATTTTAGCTAATTTTTTACGACTCCTAAATTCCTCAGCCACAAACCAACGGAGCTTCACAGCCACACAAATGGCCTCCTCTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTGAATCCTCAACCCTTATCCCTTCACCCACccttctctttccttcttcaatcctccaccttttacttccctttctctatccccttctttctccgttcttattcactaaaacccatttttcctcttcttcctcctttccatctcTCCGGCGCTACTGTTCTACTGGCGGTTTAATTTCATGGGTTTCTTGATCTTGGAGTAGGAAACAGGGAAGTGGGGTTTCTGCGAATCTATTCAAAATCTTAGTTGTTGTTCAGAGGGAGAAGATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGAACAGAAGAGAGTGGCATTGATGTTGAGTTGGTATGCTTAATGAATAATAATAATACAGTTTTATAACCTTACAAAATGTGTATGTATGTAGTGTTTTCAACATCTATGGTTTGATAGTATGCAATATAGTATTCTTCTTTTATCTTATGCTTAGAATATATTCGCTCACTCCTCCTGGTTACTTTTGCTTTTGTATCTTATTAACCTTATTGTAACTTTTTGAATCTTA ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTtACGGTTCCTGATCTTGGATGA MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSYSGNAIACRPTKSSTSYKKPRLEMVDDEEFFTVPDLG*
BLAST of Cucsa.362200.2 vs. Swiss-Prot
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 3.7e-83 Identity = 158/248 (63.71%), Postives = 192/248 (77.42%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. Swiss-Prot
Match: BBX25_ARATH (B-box zinc finger protein 25 OS=Arabidopsis thaliana GN=BBX25 PE=1 SV=2) HSP 1 Score: 301.2 bits (770), Expect = 9.9e-81 Identity = 158/241 (65.56%), Postives = 183/241 (75.93%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. Swiss-Prot
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2) HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33 Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. Swiss-Prot
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 9.4e-31 Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. Swiss-Prot
Match: BBX23_ARATH (B-box zinc finger protein 23 OS=Arabidopsis thaliana GN=BBX23 PE=2 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 8.8e-29 Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TrEMBL
Match: A0A0A0KBS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081450 PE=4 SV=1) HSP 1 Score: 488.8 bits (1257), Expect = 3.7e-135 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TrEMBL
Match: B3TLK3_CUCSA (Putative transcription factor OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 486.9 bits (1252), Expect = 1.4e-134 Identity = 236/237 (99.58%), Postives = 236/237 (99.58%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TrEMBL
Match: E5GC89_CUCME (Salt-tolerance protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 485.0 bits (1247), Expect = 5.4e-134 Identity = 234/237 (98.73%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TrEMBL
Match: A0A061EJL3_THECC (COL domain class transcription factor isoform 2 OS=Theobroma cacao GN=TCM_020013 PE=4 SV=1) HSP 1 Score: 386.7 bits (992), Expect = 2.0e-104 Identity = 187/239 (78.24%), Postives = 205/239 (85.77%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TrEMBL
Match: A0A061EKC2_THECC (COL domain class transcription factor isoform 1 OS=Theobroma cacao GN=TCM_020013 PE=4 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 1.9e-102 Identity = 186/239 (77.82%), Postives = 204/239 (85.36%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TAIR10
Match: AT1G06040.1 (AT1G06040.1 B-box zinc finger family protein) HSP 1 Score: 309.3 bits (791), Expect = 2.1e-84 Identity = 158/248 (63.71%), Postives = 192/248 (77.42%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TAIR10
Match: AT2G31380.1 (AT2G31380.1 salt tolerance homologue) HSP 1 Score: 301.2 bits (770), Expect = 5.6e-82 Identity = 158/241 (65.56%), Postives = 183/241 (75.93%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TAIR10
Match: AT1G78600.2 (AT1G78600.2 light-regulated zinc finger protein 1) HSP 1 Score: 144.1 bits (362), Expect = 1.1e-34 Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TAIR10
Match: AT1G75540.1 (AT1G75540.1 salt tolerance homolog2) HSP 1 Score: 135.2 bits (339), Expect = 5.3e-32 Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. TAIR10
Match: AT4G10240.1 (AT4G10240.1 B-box zinc finger family protein) HSP 1 Score: 128.6 bits (322), Expect = 5.0e-30 Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. NCBI nr
Match: gi|700191100|gb|KGN46304.1| (hypothetical protein Csa_6G081450 [Cucumis sativus]) HSP 1 Score: 488.8 bits (1257), Expect = 5.4e-135 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. NCBI nr
Match: gi|821595467|ref|NP_001295820.1| (B-box zinc finger protein 24-like [Cucumis sativus]) HSP 1 Score: 486.9 bits (1252), Expect = 2.0e-134 Identity = 236/237 (99.58%), Postives = 236/237 (99.58%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. NCBI nr
Match: gi|659120145|ref|XP_008460037.1| (PREDICTED: salt tolerance protein-like isoform X1 [Cucumis melo]) HSP 1 Score: 485.0 bits (1247), Expect = 7.8e-134 Identity = 234/237 (98.73%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. NCBI nr
Match: gi|778711409|ref|XP_011656726.1| (PREDICTED: B-box zinc finger protein 24-like isoform X2 [Cucumis sativus]) HSP 1 Score: 482.3 bits (1240), Expect = 5.0e-133 Identity = 236/237 (99.58%), Postives = 236/237 (99.58%), Query Frame = 1
BLAST of Cucsa.362200.2 vs. NCBI nr
Match: gi|659120149|ref|XP_008460039.1| (PREDICTED: salt tolerance protein-like isoform X2 [Cucumis melo]) HSP 1 Score: 478.4 bits (1230), Expect = 7.3e-132 Identity = 233/237 (98.31%), Postives = 236/237 (99.58%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|