Cucsa.302170.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.302170.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
Location	scaffold02951 : 382823 .. 385421 (-)
Sequence length	917

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGATAATGCTGCAGATTACAGATTGAGACGACGAGGACCAAAAACCAGTGGCTCACACTTCCCACCTTTCATCAATGGCCGCTCTTAGCTTCGGCTTTACCCCCACCACCATCCACCTACCATCAACTTCCATTCGCTCTCGTCGCATTCCCCAGACCATAACCTGCGTCGGATGGGTATCTTTTTAATGTTTCCCTTTTCTTCTTACATTTCTATTTTATTTTATTTTTCCTTATCCGGAATTCGCTCGACTCAGGACCCAGAAGGCCTCTTCGGAAAGCCTCAGACCGGTCACATCGCTCGAAATGAGTTCAAGAGGCGGCTGGAGAAAGACGCCGAAGCTCGCGAGGCTTTCGAGCGCCACGTTAGGGAAGAGAAAGAGCGCCGTAAAACGCTTCGAGAGGTAATTCTTGCAACTGGGGTTTTTGAATTTGATGGTTGTTTTCATTTCAAATTTCTTCTGTTGGCCTGCGTTTTGAGTTATTGAATGTGTTTTTCATCTCTTTTTTTTTGGATAGTCTCGTGTAATTCCGGGCAATGTGACTGGTCTTATCGAATATTTTCTTGATACTGAAGCTCAGGATATTGAATTTGAAATCGCAAGGTTGAGACCCAGGTTAGTGATCGAAACAGGATTCTGATTTTTGTTCTTCTAGTTTTCTCTGGTCTTGAATAAACTCCACAATTGCCTCCTTATTTGAATTTAGTTGCACCTTAATTTTAGTTAATTAAATTTTAAATTAGTCGTTAGGATTTAATTGGAATTATTATTTTTTTGTTTTTTGGAAGGCTAAATAATAGGAATGTATTAGGGTGATGTTAGGATCTAACTCTTAAGGAACATAAGTAATTAGTTAGGAGGTTGTTAAGATATTTGTTTATATGTATAAATGGAGTGGGAGATGAAGGGAGTAATTAGGCATTGATTCTCTTGGTTTAGTGCTTGATTGATCTCGAATAAGGAAGGCTCCAAGTTACCCAAATTGCAAAGTACTTTACCAAAATATGGTCTTCTTTGGTTCTTATCACTATAAATGGCTAGTATTGGGTGTGACAGGGAGCTTTTGGAACCTTCGATGATAAGAGATTATGAGTATCGGGCCCCTAAAGTTTGTTAAGAGTGGATGTCAGTTAGCTGAAGTTTTTAGATTTAGTAGTGGTTTAGGATGGTATGGATGAGTAAGTCTTGAGTTCAAACTTCTATAACGTTATTATCATAACCACTGAGTTGAGGTAAGTAGTATCAAAACAAGTCTTTGTGTTTGAACTTCTAAAATGTCATTACCATCCATAATACAATGTGTTTTAGCCCTTGAAATGTCATTTACTACGCACCAACTCAAGCTTTTGGATTTAATAAATTTAACATGGTATCAAAGTAGATCTTCGTCTTGTATTTAAACTAATATCATTATCATATCGGCTTAAGTTATTTAACAAAGTTGATATTGTTTTTCAAATGGATTGATTTCTGCCATGTATGCAAGCCCACTGCATCAGTCAGGATGTAGAACCGAAAAATTTTGAATTTGAATAAAGCCTTCTGATATTTTTGTGGAATAGAAGTATTCCTTTAATTTTTCTTCGCTACAACATGCATCAAATGGCAGGCTGAATGAGGAGTTTTTTTCACGTGTAAAACTTGAGCTGGGTGAGCTTAGATTTGCCGTTAACAAAACCGAGGTCGATTCTTGACATATTTTTTTAATTTCCTTAGATGACAATTGATGCTACAACAACAACTAAACATAAGCACTTCCCATAATTTTGTTTATAGGCCATGGAAGATAGAGTGATTGAGTTGGAAGCATTACAGAAAGCCCTTGAAGAAGGAATAGGTTTGTCTAAAACCTTATATTATTTACTGTCCTATAATGCTTCCCATCTATATATTTCATTTCATTTTCTGTTATGTTACAGAAGCCTATGATAAAATGCAAAGGGAACTAGTAAAGGCAAGGGAAGGTTTAACCAAAATTTTAACATCAAAGGATGTAAAAGCTACTGTATGTGTTTTTTTGTTTCTCATTTCACTCTGCTGAGAATAGCAAATTCTGCAACCAAAATGCTAATGCCATTTTTTTCTTTGTGCAGTTGCTAGACATGTTAGAGCGAAATGAGCTCAATAGATCGTTACTCGCCCTTCTGGACGAAAACATAGCCAATGCCCAAATGGGTAACCAGGTAAGTCTACCTTTTGATCTGTTTTCTGAGTTACAATGTCAACATCAACAATATCTTGTAGGGAAAAAAATTTCTGTCAAAATATTTTGGGTTGGCTATGAAAGAATTGAAACAGAATTGGTAAAGATCTAAGTTGATAAAGATCTAAGCTTTTTATCATCATTTCTCTTCTATTAATTTTCTTGAATGAACTCTTTTACTCAATGAATCTTCCATTAACGATAAACAGAAACAAGCTGCTGCTTTCATGGAAAAGGTTCGAGGGGCAGTTCTCAAGTACATGACAGCTTAGTCTTATTGAGGTACAGATTGTGAATTTTTTTTCAGTTTCTTCTCAACAATCACATGTAGGGAACACGTTTACTAATATCTTATATAATAATAAATTACATAATTTTGGTTGAATTAACCCAT

mRNA sequence

CGGATAATGCTGCAGATTACAGATTGAGACGACGAGGACCAAAAACCAGTGGCTCACACTTCCCACCTTTCATCAATGGCCGCTCTTAGCTTCGGCTTTACCCCCACCACCATCCACCTACCATCAACTTCCATTCGCTCTCGTCGCATTCCCCAGACCATAACCTGCGTCGGATGGGACCCAGAAGGCCTCTTCGGAAAGCCTCAGACCGGTCACATCGCTCGAAATGAGTTCAAGAGGCGGCTGGAGAAAGACGCCGAAGCTCGCGAGGCTTTCGAGCGCCACGTTAGGGAAGAGAAAGAGCGCCGTAAAACGCTTCGAGAGTCTCGTGTAATTCCGGGCAATGTGACTGGTCTTATCGAATATTTTCTTGATACTGAAGCTCAGGATATTGAATTTGAAATCGCAAGGTTGAGACCCAGGCTGAATGAGGAGTTTTTTTCACGTGTAAAACTTGAGCTGGGTGAGCTTAGATTTGCCGTTAACAAAACCGAGGCCATGGAAGATAGAGTGATTGAGTTGGAAGCATTACAGAAAGCCCTTGAAGAAGGAATAGAAGCCTATGATAAAATGCAAAGGGAACTAGTAAAGGCAAGGGAAGGTTTAACCAAAATTTTAACATCAAAGGATGTAAAAGCTACTTTGCTAGACATGTTAGAGCGAAATGAGCTCAATAGATCGTTACTCGCCCTTCTGGACGAAAACATAGCCAATGCCCAAATGGGTAACCAGAAACAAGCTGCTGCTTTCATGGAAAAGGTTCGAGGGGCAGTTCTCAAGTACATGACAGCTTAGTCTTATTGAGGTACAGATTGTGAATTTTTTTTCAGTTTCTTCTCAACAATCACATGTAGGGAACACGTTTACTAATATCTTATATAATAATAAATTACATAATTTTGGTTGAATTAACCCAT

Coding sequence (CDS)

ATGGCCGCTCTTAGCTTCGGCTTTACCCCCACCACCATCCACCTACCATCAACTTCCATTCGCTCTCGTCGCATTCCCCAGACCATAACCTGCGTCGGATGGGACCCAGAAGGCCTCTTCGGAAAGCCTCAGACCGGTCACATCGCTCGAAATGAGTTCAAGAGGCGGCTGGAGAAAGACGCCGAAGCTCGCGAGGCTTTCGAGCGCCACGTTAGGGAAGAGAAAGAGCGCCGTAAAACGCTTCGAGAGTCTCGTGTAATTCCGGGCAATGTGACTGGTCTTATCGAATATTTTCTTGATACTGAAGCTCAGGATATTGAATTTGAAATCGCAAGGTTGAGACCCAGGCTGAATGAGGAGTTTTTTTCACGTGTAAAACTTGAGCTGGGTGAGCTTAGATTTGCCGTTAACAAAACCGAGGCCATGGAAGATAGAGTGATTGAGTTGGAAGCATTACAGAAAGCCCTTGAAGAAGGAATAGAAGCCTATGATAAAATGCAAAGGGAACTAGTAAAGGCAAGGGAAGGTTTAACCAAAATTTTAACATCAAAGGATGTAAAAGCTACTTTGCTAGACATGTTAGAGCGAAATGAGCTCAATAGATCGTTACTCGCCCTTCTGGACGAAAACATAGCCAATGCCCAAATGGGTAACCAGAAACAAGCTGCTGCTTTCATGGAAAAGGTTCGAGGGGCAGTTCTCAAGTACATGACAGCTTAG

Protein sequence

MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA*

Homology

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BLAST of Cucsa.302170.2 vs. TrEMBL
Match: A0A0A0KKI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160130 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.0e-127
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1


Query: 1   MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD 60
           MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD
Sbjct: 1   MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD 60

Query: 61  AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE 120
           AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE
Sbjct: 61  AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE 120

Query: 121 FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI 180
           FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI
Sbjct: 121 FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI 180

Query: 181 LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA 240
           LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
Sbjct: 181 LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA 239

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BLAST of Cucsa.302170.2 vs. TrEMBL
Match: A0A151TJK2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_013522 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 7.0e-89
Identity = 170/242 (70.25%), Postives = 204/242 (84.30%), Query Frame = 1


Query: 1   MAALSFGFTPTTIHLPST-SIRSR---RIPQTITCVGWDPEGLFGKPQTGHIARNEFKRR 60
           MA LSFG    ++   +    RS    R P  I C+GWDPEG+ G P+TGH+AR E KRR
Sbjct: 1   MATLSFGIATISVSSAADCGTRSNWKWRRPNRILCIGWDPEGVLGPPKTGHLARLELKRR 60

Query: 61  LEKDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPR 120
           LE+D EAREAF+R  REEKERR++LR+SRV+P     LIEY LDTEAQ+IEFEIAR+RPR
Sbjct: 61  LERDTEAREAFQRQAREEKERRQSLRQSRVLPDTPQDLIEYLLDTEAQEIEFEIARMRPR 120

Query: 121 LNEEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREG 180
           LN+EFFS++KLELG+LRFAVN+T+ MEDR+IELEAL+KA++EG+EAYDKMQ EL+KARE 
Sbjct: 121 LNQEFFSQLKLELGQLRFAVNRTQLMEDRLIELEALEKAIQEGVEAYDKMQDELIKAREN 180

Query: 181 LTKILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKY 239
           LTKILTSKDVKATLL+M+ERNE+NRSLLALLDENIA+AQ GNQKQAA +MEK+RGAVLKY
Sbjct: 181 LTKILTSKDVKATLLEMVERNEINRSLLALLDENIASAQRGNQKQAAEYMEKLRGAVLKY 240

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BLAST of Cucsa.302170.2 vs. TrEMBL
Match: B9RBQ2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1679860 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.5e-88
Identity = 170/238 (71.43%), Postives = 201/238 (84.45%), Query Frame = 1


Query: 1   MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD 60
           MAAL+ G   T+I     ++   R    I+C+GWDPEGL G PQTGHIAR EF+RRLE+D
Sbjct: 1   MAALALGIA-TSITFNIRTLPITRSKPRISCIGWDPEGLLGPPQTGHIARREFQRRLERD 60

Query: 61  AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE 120
           AEAREAFE+HVREEKERR+ LR SR IP     L+EYFLDTEAQ+IEFEIAR+RPRLN+E
Sbjct: 61  AEAREAFEQHVREEKERRQNLRLSRDIPDTPAELVEYFLDTEAQEIEFEIARMRPRLNQE 120

Query: 121 FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI 180
           FFS ++ ELG+LRFAV+KTE MEDR+IELEALQKAL+EG EAYD+MQ +L+KA+E LTK+
Sbjct: 121 FFSHLRFELGQLRFAVSKTEDMEDRLIELEALQKALQEGTEAYDEMQTDLIKAKESLTKV 180

Query: 181 LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMT 239
           LTSKDVKATLL+M+E++ELNRSLLALLDENIA+AQ  NQK AAAFMEK+R AVLKYMT
Sbjct: 181 LTSKDVKATLLEMVEKSELNRSLLALLDENIASAQQSNQKDAAAFMEKLRAAVLKYMT 237

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BLAST of Cucsa.302170.2 vs. TrEMBL
Match: A0A067K043_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20771 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.5e-88
Identity = 172/240 (71.67%), Postives = 206/240 (85.83%), Query Frame = 1


Query: 1   MAALSFGF-TPTTIHLPSTSI-RSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLE 60
           MAAL+ G  T TTI   +  + R+ R P+ I+C+GWDPEG+FG PQTGH+AR EF+RRLE
Sbjct: 1   MAALNLGIATSTTITFRARPLTRTARRPR-ISCIGWDPEGVFGPPQTGHLARREFQRRLE 60

Query: 61  KDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLN 120
           +DAEAREAFE+ VREEKERR+ LRESR+IP     LIEYFLDTEAQDIEFEIAR+RPRLN
Sbjct: 61  RDAEAREAFEQQVREEKERRRALRESRIIPDTPAELIEYFLDTEAQDIEFEIARMRPRLN 120

Query: 121 EEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLT 180
           +EFFS+++ ELG+LRFAV++TE MEDR+IELEALQKAL+EG EAYDKMQ +LV AR+ LT
Sbjct: 121 KEFFSKIEFELGQLRFAVSRTEDMEDRLIELEALQKALQEGTEAYDKMQVDLVNARKSLT 180

Query: 181 KILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMT 239
           +ILTSKDVKATLL+M+E+N++NRSLL LLDENIA+A   NQK AAAFMEK+R AVLKYMT
Sbjct: 181 EILTSKDVKATLLEMVEQNKINRSLLTLLDENIASAHQSNQKDAAAFMEKLRAAVLKYMT 239

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BLAST of Cucsa.302170.2 vs. TrEMBL
Match: A0A059CIE5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02017 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87
Identity = 173/241 (71.78%), Postives = 200/241 (82.99%), Query Frame = 1


Query: 1   MAALSFGFTP--TTIHLPSTSI-RSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRL 60
           MAAL+ G     TT    S S  R R  P  I+CV WDPEGLFG PQTGHIAR+EF+RRL
Sbjct: 1   MAALAIGVAAGATTSMAGSRSFHRLRHAPTRISCVKWDPEGLFGPPQTGHIARSEFRRRL 60

Query: 61  EKDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRL 120
           EKDAEARE FERHVREE ERR+ +RESR +P     L+EYFLDTEAQ+IEFEIAR+RPRL
Sbjct: 61  EKDAEAREEFERHVREENERRRAVRESRDVPDTPAELVEYFLDTEAQEIEFEIARMRPRL 120

Query: 121 NEEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGL 180
           NEEFF+ ++ ELG+LRF+V+KTE MEDR+IELEALQKAL EG EAY+KMQ +LVKA+  L
Sbjct: 121 NEEFFAHLQFELGQLRFSVSKTEDMEDRLIELEALQKALLEGTEAYEKMQVDLVKAKNNL 180

Query: 181 TKILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYM 239
           TKILTSKDVKATLL+M+E+NELNRSLL LLDENIANAQ GNQ++ AA+MEK+R AVLKYM
Sbjct: 181 TKILTSKDVKATLLEMVEQNELNRSLLTLLDENIANAQKGNQEKIAAYMEKLRAAVLKYM 240

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BLAST of Cucsa.302170.2 vs. TAIR10
Match: AT1G62780.1 (AT1G62780.1 unknown protein)

HSP 1 Score: 301.6 bits (771), Expect = 4.3e-82
Identity = 155/239 (64.85%), Postives = 191/239 (79.92%), Query Frame = 1


Query: 1   MAALSFGFTPTTIHLPSTS-IRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEK 60
           MA LSFG       + +     SRR    ITC  WDP+G+ G  QTGHIAR EFKRRLE+
Sbjct: 1   MATLSFGIAAAATTVRTIPRFNSRR--SKITCE-WDPKGVLGPAQTGHIARLEFKRRLER 60

Query: 61  DAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNE 120
           D+EAREAF++ +REEKERR+ LR+SRV+P     LIEYFLDTEAQ+IE+EIARLR RLN+
Sbjct: 61  DSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRGRLND 120

Query: 121 EFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTK 180
           EFF++++LE+G++RFAV KT  +EDR+IELE LQKALEEGIEAYDKMQ EL+ A   LTK
Sbjct: 121 EFFAQIRLEIGQIRFAVTKTADIEDRLIELETLQKALEEGIEAYDKMQNELMTATNSLTK 180

Query: 181 ILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMT 239
           +LTS D+K TLLDM+E+N++NRSLLALLDENIANA  GNQK+A  +MEK+R +VLKY+T
Sbjct: 181 LLTSTDIKTTLLDMVEKNQINRSLLALLDENIANAYKGNQKEAGDYMEKIRSSVLKYLT 236

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BLAST of Cucsa.302170.2 vs. NCBI nr
Match: gi|778699933|ref|XP_004147583.2| (PREDICTED: uncharacterized protein LOC101214026 [Cucumis sativus])

HSP 1 Score: 464.2 bits (1193), Expect = 1.4e-127
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1


Query: 1   MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD 60
           MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD
Sbjct: 1   MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD 60

Query: 61  AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE 120
           AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE
Sbjct: 61  AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE 120

Query: 121 FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI 180
           FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI
Sbjct: 121 FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI 180

Query: 181 LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA 240
           LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA
Sbjct: 181 LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA 239

[Close]

BLAST of Cucsa.302170.2 vs. NCBI nr
Match: gi|659073574|ref|XP_008437135.1| (PREDICTED: uncharacterized protein LOC103482648 [Cucumis melo])

HSP 1 Score: 448.7 bits (1153), Expect = 6.2e-123
Identity = 231/239 (96.65%), Postives = 234/239 (97.91%), Query Frame = 1


Query: 1   MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD 60
           MAALSFGFT TTIHLPSTSIRSR IPQTITC+GWDPEGLFGKPQTGHIARNEFKRRLEKD
Sbjct: 1   MAALSFGFTATTIHLPSTSIRSRPIPQTITCIGWDPEGLFGKPQTGHIARNEFKRRLEKD 60

Query: 61  AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE 120
           AEAREAFERHVREEKERRK LRESRVIP NVTGLIEYFLDTEAQDIEFEIARLRPRLNEE
Sbjct: 61  AEAREAFERHVREEKERRKALRESRVIPDNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE 120

Query: 121 FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI 180
           FFS VKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI
Sbjct: 121 FFSHVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI 180

Query: 181 LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMTA 240
           LTSKDVKATLLDM+ERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKY+TA
Sbjct: 181 LTSKDVKATLLDMVERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYITA 239

[Close]

BLAST of Cucsa.302170.2 vs. NCBI nr
Match: gi|1012356012|gb|KYP67199.1| (hypothetical protein KK1_013522 [Cajanus cajan])

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-88
Identity = 170/242 (70.25%), Postives = 204/242 (84.30%), Query Frame = 1


Query: 1   MAALSFGFTPTTIHLPST-SIRSR---RIPQTITCVGWDPEGLFGKPQTGHIARNEFKRR 60
           MA LSFG    ++   +    RS    R P  I C+GWDPEG+ G P+TGH+AR E KRR
Sbjct: 1   MATLSFGIATISVSSAADCGTRSNWKWRRPNRILCIGWDPEGVLGPPKTGHLARLELKRR 60

Query: 61  LEKDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPR 120
           LE+D EAREAF+R  REEKERR++LR+SRV+P     LIEY LDTEAQ+IEFEIAR+RPR
Sbjct: 61  LERDTEAREAFQRQAREEKERRQSLRQSRVLPDTPQDLIEYLLDTEAQEIEFEIARMRPR 120

Query: 121 LNEEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREG 180
           LN+EFFS++KLELG+LRFAVN+T+ MEDR+IELEAL+KA++EG+EAYDKMQ EL+KARE 
Sbjct: 121 LNQEFFSQLKLELGQLRFAVNRTQLMEDRLIELEALEKAIQEGVEAYDKMQDELIKAREN 180

Query: 181 LTKILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKY 239
           LTKILTSKDVKATLL+M+ERNE+NRSLLALLDENIA+AQ GNQKQAA +MEK+RGAVLKY
Sbjct: 181 LTKILTSKDVKATLLEMVERNEINRSLLALLDENIASAQRGNQKQAAEYMEKLRGAVLKY 240

[Close]

BLAST of Cucsa.302170.2 vs. NCBI nr
Match: gi|1012128846|ref|XP_015964402.1| (PREDICTED: uncharacterized protein LOC107488207 [Arachis duranensis])

HSP 1 Score: 333.2 bits (853), Expect = 3.8e-88
Identity = 175/244 (71.72%), Postives = 204/244 (83.61%), Query Frame = 1


Query: 1   MAALSFGFTPTTI-HLPSTSIRSR-----RIPQTITCVGWDPEGLFGKPQTGHIARNEFK 60
           MAALSFG   T   H  +T   +R     R P TI C+GWDPEG+ G PQTGHIAR EFK
Sbjct: 1   MAALSFGMATTAWNHGTNTHTHTRPRTHTRTP-TIRCIGWDPEGILGPPQTGHIARLEFK 60

Query: 61  RRLEKDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLR 120
           RRLE+DA+AREAF+R VREEK+RR+ LR+SR+ P N   LIEY LDTEAQDIEFEIAR+R
Sbjct: 61  RRLERDADAREAFDRQVREEKQRRQELRQSRIPPDNPQELIEYLLDTEAQDIEFEIARMR 120

Query: 121 PRLNEEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAR 180
           PRLNEEFFS++K ELG+LRFAVNKTEA EDR+IELEAL+KA++EGI+AYDKMQ EL+KAR
Sbjct: 121 PRLNEEFFSQLKSELGQLRFAVNKTEATEDRLIELEALEKAIQEGIDAYDKMQGELIKAR 180

Query: 181 EGLTKILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVL 239
           E LTKILTSKDVKATLL M+E +E+NRSLLALLDENIA+A   NQKQAA +MEK+RGA+L
Sbjct: 181 ESLTKILTSKDVKATLLQMVESSEINRSLLALLDENIADAHRSNQKQAAEYMEKLRGALL 240

[Close]

BLAST of Cucsa.302170.2 vs. NCBI nr
Match: gi|255537039|ref|XP_002509586.1| (PREDICTED: uncharacterized protein LOC8272124 [Ricinus communis])

HSP 1 Score: 332.8 bits (852), Expect = 5.0e-88
Identity = 170/238 (71.43%), Postives = 201/238 (84.45%), Query Frame = 1


Query: 1   MAALSFGFTPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLEKD 60
           MAAL+ G   T+I     ++   R    I+C+GWDPEGL G PQTGHIAR EF+RRLE+D
Sbjct: 1   MAALALGIA-TSITFNIRTLPITRSKPRISCIGWDPEGLLGPPQTGHIARREFQRRLERD 60

Query: 61  AEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLNEE 120
           AEAREAFE+HVREEKERR+ LR SR IP     L+EYFLDTEAQ+IEFEIAR+RPRLN+E
Sbjct: 61  AEAREAFEQHVREEKERRQNLRLSRDIPDTPAELVEYFLDTEAQEIEFEIARMRPRLNQE 120

Query: 121 FFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLTKI 180
           FFS ++ ELG+LRFAV+KTE MEDR+IELEALQKAL+EG EAYD+MQ +L+KA+E LTK+
Sbjct: 121 FFSHLRFELGQLRFAVSKTEDMEDRLIELEALQKALQEGTEAYDEMQTDLIKAKESLTKV 180

Query: 181 LTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEKVRGAVLKYMT 239
           LTSKDVKATLL+M+E++ELNRSLLALLDENIA+AQ  NQK AAAFMEK+R AVLKYMT
Sbjct: 181 LTSKDVKATLLEMVEKSELNRSLLALLDENIASAQQSNQKDAAAFMEKLRAAVLKYMT 237

The following BLAST results are available for this feature:

BLAST of Cucsa.302170.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKI9_CUCSA	1.0e-127	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160130 PE=4 SV=1	[more]
A0A151TJK2_CAJCA	7.0e-89	70.25	Uncharacterized protein OS=Cajanus cajan GN=KK1_013522 PE=4 SV=1	[more]
B9RBQ2_RICCO	3.5e-88	71.43	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1679860 PE=4 SV=1	[more]
A0A067K043_JATCU	3.5e-88	71.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20771 PE=4 SV=1	[more]
A0A059CIE5_EUCGR	1.7e-87	71.78	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02017 PE=4 SV=1	[more]

BLAST of Cucsa.302170.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62780.1	4.3e-82	64.85	unknown protein	[more]

BLAST of Cucsa.302170.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699933\|ref\|XP_004147583.2\|	1.4e-127	100.00	PREDICTED: uncharacterized protein LOC101214026 [Cucumis sativus]	[more]
gi\|659073574\|ref\|XP_008437135.1\|	6.2e-123	96.65	PREDICTED: uncharacterized protein LOC103482648 [Cucumis melo]	[more]
gi\|1012356012\|gb\|KYP67199.1\|	1.0e-88	70.25	hypothetical protein KK1_013522 [Cajanus cajan]	[more]
gi\|1012128846\|ref\|XP_015964402.1\|	3.8e-88	71.72	PREDICTED: uncharacterized protein LOC107488207 [Arachis duranensis]	[more]
gi\|255537039\|ref\|XP_002509586.1\|	5.0e-88	71.43	PREDICTED: uncharacterized protein LOC8272124 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0016740	transferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.302170	Cucsa.302170	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.302170.2	Cucsa.302170.2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.302170.2.CDS.8	Cucsa.302170.2.CDS.8	CDS
Cucsa.302170.2.CDS.7	Cucsa.302170.2.CDS.7	CDS
Cucsa.302170.2.CDS.6	Cucsa.302170.2.CDS.6	CDS
Cucsa.302170.2.CDS.5	Cucsa.302170.2.CDS.5	CDS
Cucsa.302170.2.CDS.4	Cucsa.302170.2.CDS.4	CDS
Cucsa.302170.2.CDS.3	Cucsa.302170.2.CDS.3	CDS
Cucsa.302170.2.CDS.2	Cucsa.302170.2.CDS.2	CDS
Cucsa.302170.2.CDS.1	Cucsa.302170.2.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.302170.2.three_prime_UTR.1	Cucsa.302170.2.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.302170.2.five_prime_UTR.1	Cucsa.302170.2.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 149..169 score: -coord: 64..84 scor
None	No IPR available	PANTHER	PTHR36333	FAMILY NOT NAMED	coord: 1..239 score: 4.6E
None	No IPR available	PANTHER	PTHR36333:SF1	SUBFAMILY NOT NAMED	coord: 1..239 score: 4.6E