Cucsa.301700.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.301700.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal protein L15
Location	scaffold02951 : 9483 .. 11617 (+)
Sequence length	1121

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTTGAACTTCTCTTTCCAATGGGTATGATACCGATCTCTTCTTCTTCCTTCTTCCGTTTAATTTTTCAGCGAGTAGGGAGTTTTTACACCCAAATTTTTAAAGACACTATCATGCGGTTTGTTCGTTCTTGTCATCTTCATAATCTTCCAATTTTGTTTGTTTATGGAGAAGCTTAGATTAGATTTTCTAATGTTCTTCTTTGATGAAATCGAAATATTTTCTTTTATCATTCTGATTTTTTAGCTTTCCTTTGGCATCTGGAAAAAATGGGGTAAAATTTAACGCATTGAATGGTTCTAGTATTTTGAACTGTTTTTATTTATTTATATTACTTGTATTTTAATACTCTCTCAAGTTAGATTGATTACATAATAGCTTGAATTAGATTATTATTTGTTGCTGTTTGATAACTTTGGAAATTTTCTTTtATTTTTCTGATTGTTTATGTTCTTGCTTGATATAATCGATTAAAGTTGTCAAGGATGTTTTTTTTttAGTGTTTTAAGATCTACTTCTGTTTTCTTAAGTAGGCTTAGGCTACTTGGTCATTTTTGTTTtCTTTTtCTTTTAGTTTAAATTTAGTTCTTATAGTGCAAAAATTTACAATTTAGTCCTGGAAAAGTTCACATGATTCCCTAGCTACTTTAATTTTTTTTTtAAATTGAGTGTATTCTTTGGTGTTGTGAATTTTTTAGCCCATCGAACCATTTTTGTTTTTTCATATCATTGCATTGAATTTATAAGGAGATTTTTGTTGAAATTTTTAAATCAATGTGTTTGCTTACCTTTTACTATTTTTAAAATCTTTCAGTTTAGATTGTTTATAGTGGAGCCTAGGTTAGATTGTTGCATGTTTATGGTTCGTGAAATGGAAAAAAAAAaCCCCTAATGTTCTCTATTCGCTTAGTTGACAATATTTGTAACTTGAAAAAATAGGGGCTTACAAGTATGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTTATGAGGTTTCTTCAGAGGGTAAGATGCTGGGAATATCGCCAACATCCTTCAATTGTCCGCGTCAATCATCCCACTCGCCCTGATAAAGCTCGGCGTCTGGGTTACAAGGCCAAGCAGGTAAGATAGTATGTAAGCATTTTCTTATAGAGTTATTTGCATCTAAGCTTACATGAGTTTTTTCCCTAGATGTTTTGGTTATCATGTCATTGGATTTTTTGGTATCCTTGTTTtATTTTCTTCCAAATGTTCTCATTTTATTCTGTATTTTACTGTTTGGAAGTTTTAGAGTAAATGTTGCATCTTTTTTTtGTCTAACTTGGATGGTATGATGGTTTTTtATGATGTTTGGAAGTTATAGAGTATGATATGATGGTTTTTGGGTTATGTACTTTGCTGCAGGGTTATGTCGTTTATAGGGTTCGTGTGAGACGTGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGAAAACCAACTAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGGTCAGTTGCTGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGGTAATTGATTTTACACCCTTATTTCATTAGGTAACTTTAGGCCAGGAGCAATGATTGATACAAAATATTGATTACTCTCTTATTGACAAATTGAAATAGGATTCTACGTACAAATACTATGAAGTGATTTTGGTTGATGTTGCCCATAATGCCGTTCGCAATGACCCGAGAATCAACTGGATCTGCAACCCTGTCCACAAGCGCAGGGAGCTCAGAGGACTTACATCCGCAGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCAACCTGGAAGAGGAACAATACTCTATCCCTCCGTCGTTATCGTTGATTTTGGTATTTTTTTtCTCTGTTTTGTTATTTTTATTTCGAGCATTCTGTTTGGGGAATGTTGTGGCTTAAAGTTACTTCGATCTAGAAATTTTTGAACTATATAATTTGTGTCGAGGATTGTGAGGATCTTTCTAAACTAAGTGATCATTTTTGTTCTTATTATTGCAGCTCCCCTTTTTCTCTTTTTCCTTTTCAAAAGAA

mRNA sequence

AACCTTGAACTTCTCTTTCCAATGGGGGCTTACAAGTATGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTTATGAGGTTTCTTCAGAGGGTAAGATGCTGGGAATATCGCCAACATCCTTCAATTGTCCGCGTCAATCATCCCACTCGCCCTGATAAAGCTCGGCGTCTGGGTTACAAGGCCAAGCAGGTAAGATAGTATGTAAGCATTTTCTTATAGAGTTATTTGCATCTAAGCTTACATGAGTTTTTTCCCTAGATGTTTTGGTTATCATGTCATTGGATTTTTTGGTATCCTTGTTTTATTTTCTTCCAAATGTTCTCATTTTATTCTGTATTTTACTGTTTGGAAGTTTTAGAGTAAATGTTGCATCTTTTTTTTGTCTAACTTGGATGGTATGATGGTTTTTTATGATGTTTGGAAGTTATAGAGTATGATATGATGGTTTTTGGGTTATGTACTTTGCTGCAGGGTTATGTCGTTTATAGGGTTCGTGTGAGACGTGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGAAAACCAACTAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGGTCAGTTGCTGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGGATTCTACGTACAAATACTATGAAGTGATTTTGGTTGATGTTGCCCATAATGCCGTTCGCAATGACCCGAGAATCAACTGGATCTGCAACCCTGTCCACAAGCGCAGGGAGCTCAGAGGACTTACATCCGCAGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCAACCTGGAAGAGGAACAATACTCTATCCCTCCGTCGTTATCGTTGATTTTGGTATTTTTTTTCTCTGTTTTGTTATTTTTATTTCGAGCATTCTGTTTGGGGAATGTTGTGGCTTAAAGTTACTTCGATCTAGAAATTTTTGAACTATATAATTTGTGTCGAGGATTGTGAGGATCTTTCTAAACTAAGTGATCATTTTTGTTCTTATTATTGCAGCTCCCCTTTTTCTCTTTTTCCTTTTCAAAAGAA

Coding sequence (CDS)

ATGATGGTTTTTGGGTTATGTACTTTGCTGCAGGGTTATGTCGTTTATAGGGTTCGTGTGAGACGTGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGAAAACCAACTAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGGTCAGTTGCTGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGGATTCTACGTACAAATACTATGAAGTGATTTTGGTTGATGTTGCCCATAATGCCGTTCGCAATGACCCGAGAATCAACTGGATCTGCAACCCTGTCCACAAGCGCAGGGAGCTCAGAGGACTTACATCCGCAGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCAACCTGGAAGAGGAACAATACTCTATCCCTCCGTCGTTATCGTTGA

Protein sequence

MMVFGLCTLLQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR*

Homology

[Close]

BLAST of Cucsa.301700.2 vs. Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.9e-76
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVL
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVL 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWIN+DSTYKYYEV+LVD AH  +RNDPRINWICN VHK RELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           +GHL+HKARPS+RATWKRNNTLSLRRYR
Sbjct: 177 RGHLYHKARPSKRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 3.8e-76
Identity = 134/148 (90.54%), Postives = 142/148 (95.95%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVL
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVL 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWIN+DSTYKYYE+ILVD AH+A+R DPRINWICN VHK RELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           +GHL+HKARPS+RATWKRNNTLSLRRYR
Sbjct: 177 RGHLYHKARPSKRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.9e-76
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QG+VVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+
Sbjct: 57  QGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVV 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYW+NEDSTYKYYE+ILVD AHNAVRNDPRINWICNPVHK RELRGLTS GKK RGLRG
Sbjct: 117 NSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGH +HK RPSRRATWK+NN+LSLRRYR
Sbjct: 177 KGHNNHKNRPSRRATWKKNNSLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.4e-76
Identity = 134/148 (90.54%), Postives = 142/148 (95.95%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QG+VVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+
Sbjct: 57  QGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVV 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYW+NEDSTYKYYE+ILVD AHNAVRNDPRINWICNPVHK RELRGLTS GKK RGLRG
Sbjct: 117 NSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGH +HK RPSRRATWK+NN++SLRRYR
Sbjct: 177 KGHNNHKNRPSRRATWKKNNSISLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-75
Identity = 135/148 (91.22%), Postives = 141/148 (95.27%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRV+RGGRKRPVPKGIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVL
Sbjct: 57  QGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVL 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKY+EVILVD AH A+RNDPRINWICNPVHK RELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           +GHLH+KA PSRRA WKRN TLSL RYR
Sbjct: 177 RGHLHNKAPPSRRANWKRNQTLSLPRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. TrEMBL
Match: A0A0A0KKP5_CUCSA (Ribosomal protein L15 OS=Cucumis sativus GN=Csa_5G162630 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 3.5e-81
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 177 KGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. TrEMBL
Match: A0A0A0KU38_CUCSA (Ribosomal protein L15 OS=Cucumis sativus GN=Csa_3G112770 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.0e-80
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVV 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHK RELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 177 KGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. TrEMBL
Match: V4T057_9ROSI (Ribosomal protein L15 OS=Citrus clementina GN=CICLE_v10024403mg PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.3e-79
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL
Sbjct: 83  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 142

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKY+EVILVD AHNA+RNDPRINW+CNPVHK RELRGLTSAGKKYRGLRG
Sbjct: 143 NSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG 202

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 203 KGHLHHKARPSRRATWKRNNTLSLRRYR 230

[Close]

BLAST of Cucsa.301700.2 vs. TrEMBL
Match: A0A067FDV6_CITSI (Ribosomal protein L15 OS=Citrus sinensis GN=CISIN_1g028730mg PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.3e-79
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKY+EVILVD AHNA+RNDPRINW+CNPVHK RELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 177 KGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. TrEMBL
Match: A0A0D2PUM3_GOSRA (Ribosomal protein L15 OS=Gossypium raimondii GN=B456_001G049600 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 5.7e-79
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVV 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKY+EVILVD AHNA+RNDPRINWICNPVHK RELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 177 KGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. TAIR10
Match: AT4G16720.1 (AT4G16720.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 285.0 bits (728), Expect = 2.8e-77
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QG+VVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+
Sbjct: 57  QGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVV 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYW+NEDSTYKYYE+ILVD AHNAVRNDPRINWICNPVHK RELRGLTS GKK RGLRG
Sbjct: 117 NSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGH +HK RPSRRATWK+NN+LSLRRYR
Sbjct: 177 KGHNNHKNRPSRRATWKKNNSLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. TAIR10
Match: AT4G17390.1 (AT4G17390.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 284.3 bits (726), Expect = 4.7e-77
Identity = 134/148 (90.54%), Postives = 142/148 (95.95%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QG+VVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+
Sbjct: 57  QGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVV 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYW+NEDSTYKYYE+ILVD AHNAVRNDPRINWICNPVHK RELRGLTS GKK RGLRG
Sbjct: 117 NSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGH +HK RPSRRATWK+NN++SLRRYR
Sbjct: 177 KGHNNHKNRPSRRATWKKNNSISLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. NCBI nr
Match: gi|700195088|gb|KGN50265.1| (hypothetical protein Csa_5G162630 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 5.1e-81
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 177 KGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. NCBI nr
Match: gi|778700136|ref|XP_011654821.1| (PREDICTED: 60S ribosomal protein L15-2 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 5.1e-81
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL
Sbjct: 79  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 138

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG
Sbjct: 139 NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 198

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 199 KGHLHHKARPSRRATWKRNNTLSLRRYR 226

[Close]

BLAST of Cucsa.301700.2 vs. NCBI nr
Match: gi|449458361|ref|XP_004146916.1| (PREDICTED: 60S ribosomal protein L15-1 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 4.3e-80
Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVV 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHK RELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 177 KGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. NCBI nr
Match: gi|1009125257|ref|XP_015879515.1| (PREDICTED: 60S ribosomal protein L15-1 [Ziziphus jujuba])

HSP 1 Score: 305.1 bits (780), Expect = 7.3e-80
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL
Sbjct: 57  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 116

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYW+NEDSTYKYYEVILVDVAHNA+RNDPRINW+CNPVHK RELRGLTSAGKKYRGLRG
Sbjct: 117 NSYWLNEDSTYKYYEVILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG 176

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 177 KGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.2 vs. NCBI nr
Match: gi|1009112357|ref|XP_015867877.1| (PREDICTED: 60S ribosomal protein L15-1-like [Ziziphus jujuba])

HSP 1 Score: 305.1 bits (780), Expect = 7.3e-80
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 1


Query: 11  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 70
           QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL
Sbjct: 59  QGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 118

Query: 71  NSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRG 130
           NSYW+NEDSTYKYYEVILVDVAHNA+RNDPRINW+CNPVHK RELRGLTSAGKKYRGLRG
Sbjct: 119 NSYWLNEDSTYKYYEVILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG 178

Query: 131 KGHLHHKARPSRRATWKRNNTLSLRRYR 159
           KGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 179 KGHLHHKARPSRRATWKRNNTLSLRRYR 206

The following BLAST results are available for this feature:

BLAST of Cucsa.301700.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL15B_PICMA	2.9e-76	90.54	60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1	[more]
RL15A_PICMA	3.8e-76	90.54	60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1	[more]
RL151_ARATH	4.9e-76	91.22	60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1	[more]
RL152_ARATH	8.4e-76	90.54	60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1	[more]
RL15_PETHY	1.1e-75	91.22	60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1	[more]

BLAST of Cucsa.301700.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKP5_CUCSA	3.5e-81	100.00	Ribosomal protein L15 OS=Cucumis sativus GN=Csa_5G162630 PE=3 SV=1	[more]
A0A0A0KU38_CUCSA	3.0e-80	98.65	Ribosomal protein L15 OS=Cucumis sativus GN=Csa_3G112770 PE=3 SV=1	[more]
V4T057_9ROSI	4.3e-79	96.62	Ribosomal protein L15 OS=Citrus clementina GN=CICLE_v10024403mg PE=3 SV=1	[more]
A0A067FDV6_CITSI	4.3e-79	96.62	Ribosomal protein L15 OS=Citrus sinensis GN=CISIN_1g028730mg PE=3 SV=1	[more]
A0A0D2PUM3_GOSRA	5.7e-79	96.62	Ribosomal protein L15 OS=Gossypium raimondii GN=B456_001G049600 PE=3 SV=1	[more]

BLAST of Cucsa.301700.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16720.1	2.8e-77	91.22	Ribosomal protein L23/L15e family protein	[more]
AT4G17390.1	4.7e-77	90.54	Ribosomal protein L23/L15e family protein	[more]

BLAST of Cucsa.301700.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195088\|gb\|KGN50265.1\|	5.1e-81	100.00	hypothetical protein Csa_5G162630 [Cucumis sativus]	[more]
gi\|778700136\|ref\|XP_011654821.1\|	5.1e-81	100.00	PREDICTED: 60S ribosomal protein L15-2 [Cucumis sativus]	[more]
gi\|449458361\|ref\|XP_004146916.1\|	4.3e-80	98.65	PREDICTED: 60S ribosomal protein L15-1 [Cucumis sativus]	[more]
gi\|1009125257\|ref\|XP_015879515.1\|	7.3e-80	97.30	PREDICTED: 60S ribosomal protein L15-1 [Ziziphus jujuba]	[more]
gi\|1009112357\|ref\|XP_015867877.1\|	7.3e-80	97.30	PREDICTED: 60S ribosomal protein L15-1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000439	Ribosomal_L15e
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR024794	Rbsml_L15e_core_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.301700	Cucsa.301700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.301700.2	Cucsa.301700.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301700.2.five_prime_UTR.1	Cucsa.301700.2.five_prime_UTR.1	five_prime_UTR
Cucsa.301700.2.five_prime_UTR.2	Cucsa.301700.2.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301700.2.CDS.1	Cucsa.301700.2.CDS.1	CDS
Cucsa.301700.2.CDS.2	Cucsa.301700.2.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301700.2.three_prime_UTR.1	Cucsa.301700.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000439	Ribosomal protein L15e	PANTHER	PTHR11847	RIBOSOMAL PROTEIN L15	coord: 11..158 score: 8.5E
IPR000439	Ribosomal protein L15e	PFAM	PF00827	Ribosomal_L15e	coord: 11..144 score: 3.6
IPR000439	Ribosomal protein L15e	SMART	SM01384	Ribosomal_L15e_2	coord: 5..147 score: 3.9
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 11..149 score: 3.88
IPR024794	Ribosomal protein L15e core domain	GENE3D	G3DSA:3.40.1120.10		coord: 11..149 score: 2.4