Cucsa.261730.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.261730.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Clavata3/esr-related 16, putative
Location	scaffold02265 : 254174 .. 255056 (+)
Sequence length	883

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAATCCAAGAGAGGGTCAGAAATCATGTGGGTTAGACCCATGATATAAGGAGGAATACACACACCCAACCTCTCCTCTCTCTCATTTTCATTCTTCACCATTTCTGCTTCCATTTCCAAAACTCTTCAAAATCACAAAAACAAAAAaCAAACAAAAAaGAAAACAATTTTTTTTttGGAGGGTGTGGTGGTTTCGTGGCAATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGggTGATCCATACCGGCCCAAATCCACTTCACAATTAAGCCCAATACGGCCCAACAACAACATTCCCATATCTGTTTATTCTTCTACAGATCAATTTCTTCTGTAAGAGAAGCTTTCAATTATTACTATTTTCTTTTTAATTATTTAGAAGTTCGAAGAGAAATAAGATCATTAGGCTAGCCTTTTTTAGAAAAATCAAAAACAAAAaGCTAGTGATAATGCTCTTGTTTCTTCTTCTAATATTGtAGTTTTTtTTTTttttCTTTTTtACtATTATTTTTTGTtCTCTTGCATGTGTTTTAATTTATTGCTTTTGTAGTTATTTGTCCATCCCTACATTTCTTTTAATTCAAATATTACAGATTTGAATATTTCACATTTAAAACAC

mRNA sequence

CAAGAATCCAAGAGAGGGTCAGAAATCATGTGGGTTAGACCCATGATATAAGGAGGAATACACACACCCAACCTCTCCTCTCTCTCATTTTCATTCTTCACCATTTCTGCTTCCATTTCCAAAACTCTTCAAAATCACAAAAACAAAAAACAAACAAAAAAGAAAACAATTTTTTTTTTGGAGGGTGTGGTGGTTTCGTGGCAATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAAGCCCAATACGGCCCAACAACAACATTCCCATATCTGTTTATTCTTCTACAGATCAATTTCTTCTGTAAGAGAAGCTTTCAATTATTACTATTTTCTTTTTAATTATTTAGAAGTTCGAAGAGAAATAAGATCATTAGGCTAGCCTTTTTTAGAAAAATCAAAAACAAAAAGCTAGTGATAAtgctcttgtttcttcttctaatattgtagttttttttttttttcttttttactattattttttgttctcttgcatgtgttttaatttattgcttttgtagttatttGTCCATCCCTACATTTCTTTTAATTCAAATATTACAGATTTGAATATTTCACATTTAAAACAC

Coding sequence (CDS)

ATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGggTGATCCATACCGGCCCAAATCCACTTCACAATTAA

Protein sequence

MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN*

Homology

[Close]

BLAST of Cucsa.261730.1 vs. TrEMBL
Match: A0A0A0KIX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Cucsa.261730.1 vs. TrEMBL
Match: V4UGP5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017256mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-11
Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 1   MRVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLH 60
           M++ V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSA 60

Query: 61  RKTHIFETEEVFK--PPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           RKT  F TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 61  RKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Cucsa.261730.1 vs. TrEMBL
Match: A0A067FB56_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048706mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 2   RVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 61
           R  V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   R
Sbjct: 13  RPQVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSAR 72

Query: 62  KTHIFETEEVFK--PPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KT  F TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 73  KTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of Cucsa.261730.1 vs. TrEMBL
Match: W9QTS0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022931 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.6e-09
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1


Query: 7   RGRNGGKGRKGEAG----AVAAIFFIWLILVVSRMRLSSAASK-EVNGRMLTKSTVLHRK 66
           +G+ G + R+G+       VAA FF W+IL+ S +  SSAA     NGR+  +S    RK
Sbjct: 2   QGKEGERSRRGKGSHGGVKVAATFFFWVILIFSHLSFSSAAKVLHRNGRLYRQSPP--RK 61

Query: 67  THIFETEEV-FKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
               +T+   F  P        G +D   DI+Y DDKR++HTGPNPLHN
Sbjct: 62  ARFVDTKTASFHAPLSPANSINGASDP--DILYGDDKRLVHTGPNPLHN 106

[Close]

BLAST of Cucsa.261730.1 vs. TrEMBL
Match: U5G801_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s13000g PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.5e-09
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1


Query: 2   RVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRK 61
           +VGV   R    GR+      A IF  W++L+++++ L  A   E  G+++     L RK
Sbjct: 71  KVGVAAAR----GRRYSGAKAAIIFLFWILLILAQLGLLIAFGHEETGKLVKS---LPRK 130

Query: 62  THIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
              FET     PP+  +     + D   D VYEDDKR+IHTGPNPLHN
Sbjct: 131 ARFFETR-FHAPPSQDQPLDIDKGDP--DTVYEDDKRIIHTGPNPLHN 168

[Close]

BLAST of Cucsa.261730.1 vs. TAIR10
Match: AT2G01505.1 (AT2G01505.1 CLAVATA3/ESR-RELATED 16)

HSP 1 Score: 47.0 bits (110), Expect = 8.8e-06
Identity = 30/87 (34.48%), Postives = 44/87 (50.57%), Query Frame = 1


Query: 23  AAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRKTHIFETEEVFKPPAGFKVHGG 82
           AA+FF   I V ++  +SS+A    +       ++  +  H  E      P A     G 
Sbjct: 22  AAVFFCG-IFVFAQFGISSSALFAPDHY----PSLPRKAGHFHEMASFQAPKATVSFTGQ 81

Query: 83  GENDDVTDIVYEDDKRVIHTGPNPLHN 110
              ++  D VY+DDKR++HTGPNPLHN
Sbjct: 82  RREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of Cucsa.261730.1 vs. NCBI nr
Match: gi|778708173|ref|XP_011656136.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of Cucsa.261730.1 vs. NCBI nr
Match: gi|567911845|ref|XP_006448236.1| (hypothetical protein CICLE_v10017256mg [Citrus clementina])

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-11
Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 1   MRVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLH 60
           M++ V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSA 60

Query: 61  RKTHIFETEEVFK--PPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           RKT  F TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 61  RKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Cucsa.261730.1 vs. NCBI nr
Match: gi|641845738|gb|KDO64624.1| (hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 2   RVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 61
           R  V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   R
Sbjct: 13  RPQVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSAR 72

Query: 62  KTHIFETEEVFK--PPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KT  F TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 73  KTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of Cucsa.261730.1 vs. NCBI nr
Match: gi|703087805|ref|XP_010093369.1| (hypothetical protein L484_022931 [Morus notabilis])

HSP 1 Score: 68.6 bits (166), Expect = 8.0e-09
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1


Query: 7   RGRNGGKGRKGEAG----AVAAIFFIWLILVVSRMRLSSAASK-EVNGRMLTKSTVLHRK 66
           +G+ G + R+G+       VAA FF W+IL+ S +  SSAA     NGR+  +S    RK
Sbjct: 2   QGKEGERSRRGKGSHGGVKVAATFFFWVILIFSHLSFSSAAKVLHRNGRLYRQSPP--RK 61

Query: 67  THIFETEEV-FKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
               +T+   F  P        G +D   DI+Y DDKR++HTGPNPLHN
Sbjct: 62  ARFVDTKTASFHAPLSPANSINGASDP--DILYGDDKRLVHTGPNPLHN 106

[Close]

BLAST of Cucsa.261730.1 vs. NCBI nr
Match: gi|566183704|ref|XP_006379765.1| (hypothetical protein POPTR_0008s13000g, partial [Populus trichocarpa])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1


Query: 2   RVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRK 61
           +VGV   R    GR+      A IF  W++L+++++ L  A   E  G+++     L RK
Sbjct: 71  KVGVAAAR----GRRYSGAKAAIIFLFWILLILAQLGLLIAFGHEETGKLVKS---LPRK 130

Query: 62  THIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
              FET     PP+  +     + D   D VYEDDKR+IHTGPNPLHN
Sbjct: 131 ARFFETR-FHAPPSQDQPLDIDKGDP--DTVYEDDKRIIHTGPNPLHN 168

The following BLAST results are available for this feature:

BLAST of Cucsa.261730.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIX6_CUCSA	1.4e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G060150 PE=4 SV=1	[more]
V4UGP5_9ROSI	4.6e-11	43.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017256mg PE=4 SV=1	[more]
A0A067FB56_CITSI	1.3e-10	44.14	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048706mg PE=4 S...	[more]
W9QTS0_9ROSA	5.6e-09	40.37	Uncharacterized protein OS=Morus notabilis GN=L484_022931 PE=4 SV=1	[more]
U5G801_POPTR	9.5e-09	38.89	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s13000g P...	[more]

BLAST of Cucsa.261730.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01505.1	8.8e-06	34.48	CLAVATA3/ESR-RELATED 16	[more]

BLAST of Cucsa.261730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708173\|ref\|XP_011656136.1\|	1.9e-55	100.00	PREDICTED: CLAVATA3/ESR (CLE)-related protein 16-like [Cucumis sativus]	[more]
gi\|567911845\|ref\|XP_006448236.1\|	6.6e-11	43.75	hypothetical protein CICLE_v10017256mg [Citrus clementina]	[more]
gi\|641845738\|gb\|KDO64624.1\|	1.9e-10	44.14	hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis]	[more]
gi\|703087805\|ref\|XP_010093369.1\|	8.0e-09	40.37	hypothetical protein L484_022931 [Morus notabilis]	[more]
gi\|566183704\|ref\|XP_006379765.1\|	1.4e-08	38.89	hypothetical protein POPTR_0008s13000g, partial [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0048731	system development

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.261730	Cucsa.261730	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.261730.1	Cucsa.261730.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.261730.1.five_prime_UTR.1	Cucsa.261730.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.261730.1.CDS.1	Cucsa.261730.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.261730.1.three_prime_UTR.1	Cucsa.261730.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16-RELATED	coord: 1..109 score: 4.6