Cucsa.189540.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGATGTAACTATGTAAGTAGTACTACAAAGTAGGAAACCCCCCAAAGGCCGGCCTCCCCTTGTTTTTAGTGTAATAAAATCATGGCCGCTTCGAAGTCGAAGGTGTGCGGGAGAGGGCACTGGCGGCCGGCGGAGGACACCAAGCTGAAGGAACTGGTGGGCCTTTACGGACCGCAAAACTGGAACCTGATCGCTGAGAAACTGGAGGGAAGATCTGGAAAGAGTTGTAGATTGAGATGGTTTAACCAACTGGACCCAAGGATCAACAGAAAAGCTTTCACGGAAGAGGAAGAGGAGAGGCTAATGCAAGCTCATGAAATGTATGGTAATAAATGGGCTATGATTGCAAGGCTTTTTCCTGGACGTACAGATAATGGTGTCAAGAATCATTGGCATGTCGTAATGGCTAGAAATTGTAGACAACATTTTAGTTCTTACAGGAGATCGTCAAGGAACCTCACTCACTCACTTTCAATTGCTTCCTCTGCCCTTCCTACGCCCCcTCTTCCTCCCACTCGCTCCCTCTCACGTCCCAATCACTTGCCTTTTCATCTTCTCCCCcGACCTGGTGCGATTATTACTATTTTTCTTTCTGTCTTCTTTTtCTTAATTATCATTTTTATTCACATCATCCTATATCTTCAGATTATTGGGTTCAGACTTATTAATTTATGACTTAACATTCTTTTTGTAGCTCGTGAGAGAGTTGATTATACTTTTAGATTTCAACATGAAAAAGGGTGATTTATTTTCTTTTAACTTTTGTATTATGTTTAAACTCAAAAGGTTTTTTGAGCTATGCTATGCAAACATGTAGTCCTCTAAACTATAGCTTTTGAATTATTGCTCATGCGAAAACTTAATTGTGTTTCAAACTAATGTTTTTtATTATTATTATTATTATTTTTTAATATTTAGTGGTTGAATGTGCTACACTTGTTTTGTGAAGTCTAGTCAGATATTTAATAATTAAAATTTATTCTGTGCAATATAATATTTATTAAATAATTTCATTTATTTTTTAAAATGTTGCATAAGAGGAGTACACTTTAATTAAAATTGGAACAGTCAATTTTTATGATTTTCAGTTTCAGATATGGAGAACATTTGAATGTAAATGGGGTGACTCATCTATTGCGCAACCCAGACAGCATCCATATGCTCCTTTCACAACTTTTGTTTTTtAGTTTAAAGATGGAGTTTTCATTAGATGTTTGATGGAATAGAAACGAAGGGaTTttTTTTTTTTTTTCCTTtTtCtCATCTTTtCCTTATAATAAAATAAACTGAATATAGTGACACATGTTTTATTTTAGCTTATTAATATTAATTCTATGGCATGTTTCTCTATTTTGTTATGAAATGGTGAATGGTAATGGACACAGCAAATTATGGACAGATTCTCTTGGAATGAATTGCAGTGACGTATTCAGTTTAGTAAGAGGATTGAACTAAGACATTATTAAAATTGGATTAAATTACTTGTTGTGAGTTTCTAAGAGATATTTTGTGTACATAGGCTCAGAAACAAGCAACGAAATGGAAGTTATATCATCCTACAGCTGCAACAAAACGAGCTCAAACCATGAGAATCAAACTTGCAACAACATTCATTACTGTCCATCATATATCATGACCGAAATGCAACAAAGGAGCAACTACAGTTACAACTCTCATTGCCAGATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATATTTCAGAGGGGATGGTGGTAGTGGAACCGGTGTTTATCGACTTTCTAGGAGTAGGAGGCAGATGAAAGGGTCCAAGGGAAAAAAaGAAAAGGGTGGCTTCATCTTTATTATCATTATTTTTTtGGTTGCAAATTGCAATCATCAGAAGTGGCCTGAATGCGGGTGTGGTCCAGAGATTTGGAAGAGGCCATAACAAGTAATTGAGAGCAAAAGTAAAGAGGAGATGATTTGAGTTGGACTGTAGGAGTGGTGAAAAGATATGGCAGTCAGTGCCATTGAAAGCGCTTTATGAATATATATATAAATCCCAAAACTCAAACCATCATTTTCTTCTTTTTCTGCACATAATGAATGTGATGGCCAGTGGCTTATATTCCCAAGATTATCCATTTCTTACACTGCTCTTTACTTTTGATATCACCCATTTCACTCCC TGGATGTAACTATGTAAGTAGTACTACAAAGTAGGAAACCCCCCAAAGGCCGGCCTCCCCTTGTTTTTAGTGTAATAAAATCATGGCCGCTTCGAAGTCGAAGGTGTGCGGGAGAGGGCACTGGCGGCCGGCGGAGGACACCAAGCTGAAGGAACTGGTGGGCCTTTACGGACCGCAAAACTGGAACCTGATCGCTGAGAAACTGGAGGGAAGATCTGGAAAGAGTTGTAGATTGAGATGGTTTAACCAACTGGACCCAAGGATCAACAGAAAAGCTTTCACGGAAGAGGAAGAGGAGAGGCTAATGCAAGCTCATGAAATGTATGGTAATAAATGGGCTATGATTGCAAGGCTTTTTCCTGGACGTACAGATAATGGTGTCAAGAATCATTGGCATGTCGTAATGGCTAGAAATTGTAGACAACATTTTAGTTCTTACAGGAGATCGTCAAGGAACCTCACTCACTCACTTTCAATTGCTTCCTCTGCCCTTCCTACGCCCCCTCTTCCTCCCACTCGCTCCCTCTCACGTCCCAATCACTTGCCTTTTCATCTTCTCCCCCGACCTGATTCTCTTGGAATGAATTGCAGTGACGTATTCAGTTTAGCTCAGAAACAAGCAACGAAATGGAAGTTATATCATCCTACAGCTGCAACAAAACGAGCTCAAACCATGAGAATCAAACTTGCAACAACATTCATTACTGTCCATCATATATCATGACCGAAATGCAACAAAGGAGCAACTACAGTTACAACTCTCATTGCCAGATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATATTTCAGAGGGGATGGTGGTAGTGGAACCGGTGTTTATCGACTTTCTAGGAGTAGGAGGCAGATGAAAGGGTCCAAGGGAAAAAAAGAAAAGGGTGGCTTCATCTTTATTATCATTATTTTTTTGGTTGCAAATTGCAATCATCAGAAGTGGCCTGAATGCGGGTGTGGTCCAGAGATTTGGAAGAGGCCATAACAAGTAATTGAGAGCAAAAGTAAAGAGGAGATGATTTGAGTTGGACTGTAGGAGTGGTGAAAAGATATGGCAGTCAGTGCCATTGAAAGCGCTTTATGAATATATATATAAATCCCAAAACTCAAACCATCATTTTCTTCTTTTTCTGCACATAATGAATGTGATGGCCAGTGGCTTATATTCCCAAGATTATCCATTTCTTACACTGCTCTTTACTTTTGATATCACCCATTTCACTCCC ATGGCCGCTTCGAAGTCGAAGGTGTGCGGGAGAGGGCACTGGCGGCCGGCGGAGGACACCAAGCTGAAGGAACTGGTGGGCCTTTACGGACCGCAAAACTGGAACCTGATCGCTGAGAAACTGGAGGGAAGATCTGGAAAGAGTTGTAGATTGAGATGGTTTAACCAACTGGACCCAAGGATCAACAGAAAAGCTTTCACGGAAGAGGAAGAGGAGAGGCTAATGCAAGCTCATGAAATGTATGGTAATAAATGGGCTATGATTGCAAGGCTTTTTCCTGGACGTACAGATAATGGTGTCAAGAATCATTGGCATGTCGTAATGGCTAGAAATTGTAGACAACATTTTAGTTCTTACAGGAGATCGTCAAGGAACCTCACTCACTCACTTTCAATTGCTTCCTCTGCCCTTCCTACGCCCCcTCTTCCTCCCACTCGCTCCCTCTCACGTCCCAATCACTTGCCTTTTCATCTTCTCCCCcGACCTGATTCTCTTGGAATGAATTGCAGTGACGTATTCAGTTTAGCTCAGAAACAAGCAACGAAATGGAAGTTATATCATCCTACAGCTGCAACAAAACGAGCTCAAACCATGAGAATCAAACTTGCAACAACATTCATTACTGTCCATCATATATCATGA MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRSSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRPDSLGMNCSDVFSLAQKQATKWKLYHPTAATKRAQTMRIKLATTFITVHHIS*
BLAST of Cucsa.189540.2 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30 Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. Swiss-Prot
Match: MYB_CHICK (Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 3.9e-28 Identity = 62/165 (37.58%), Postives = 92/165 (55.76%), Query Frame = 1
HSP 2 Score: 72.4 bits (176), Expect = 6.8e-12 Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. Swiss-Prot
Match: MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27 Identity = 64/156 (41.03%), Postives = 90/156 (57.69%), Query Frame = 1
HSP 2 Score: 72.0 bits (175), Expect = 8.8e-12 Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2) HSP 1 Score: 124.0 bits (310), Expect = 2.0e-27 Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 1
HSP 2 Score: 76.6 bits (187), Expect = 3.6e-13 Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2) HSP 1 Score: 124.0 bits (310), Expect = 2.0e-27 Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1
HSP 2 Score: 72.0 bits (175), Expect = 8.8e-12 Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TrEMBL
Match: A0A0A0LHV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1) HSP 1 Score: 348.2 bits (892), Expect = 7.1e-93 Identity = 166/174 (95.40%), Postives = 167/174 (95.98%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TrEMBL
Match: D9ZJ60_MALDO (MYB domain class transcription factor OS=Malus domestica GN=MYB32 PE=2 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 6.7e-59 Identity = 111/156 (71.15%), Postives = 126/156 (80.77%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TrEMBL
Match: A0A078ILC5_BRANA (BnaC05g51000D protein OS=Brassica napus GN=BnaC05g51000D PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57 Identity = 109/156 (69.87%), Postives = 121/156 (77.56%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TrEMBL
Match: A0A0S3R1P8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G218200 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 4.8e-57 Identity = 125/223 (56.05%), Postives = 143/223 (64.13%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TrEMBL
Match: A0A0L9TM14_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g119300 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 4.8e-57 Identity = 125/223 (56.05%), Postives = 143/223 (64.13%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117) HSP 1 Score: 225.3 bits (573), Expect = 3.5e-59 Identity = 102/120 (85.00%), Postives = 110/120 (91.67%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105) HSP 1 Score: 218.4 bits (555), Expect = 4.3e-57 Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56) HSP 1 Score: 191.4 bits (485), Expect = 5.6e-49 Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TAIR10
Match: AT3G29020.2 (AT3G29020.2 myb domain protein 110) HSP 1 Score: 191.4 bits (485), Expect = 5.6e-49 Identity = 85/125 (68.00%), Postives = 102/125 (81.60%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54) HSP 1 Score: 189.1 bits (479), Expect = 2.8e-48 Identity = 89/128 (69.53%), Postives = 102/128 (79.69%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. NCBI nr
Match: gi|449442435|ref|XP_004138987.1| (PREDICTED: transcription factor MYB44 [Cucumis sativus]) HSP 1 Score: 348.2 bits (892), Expect = 1.0e-92 Identity = 166/174 (95.40%), Postives = 167/174 (95.98%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. NCBI nr
Match: gi|659082191|ref|XP_008441713.1| (PREDICTED: transcription factor MYB44 [Cucumis melo]) HSP 1 Score: 323.2 bits (827), Expect = 3.5e-85 Identity = 154/165 (93.33%), Postives = 157/165 (95.15%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. NCBI nr
Match: gi|302398937|gb|ADL36763.1| (MYB domain class transcription factor [Malus domestica]) HSP 1 Score: 235.3 bits (599), Expect = 9.6e-59 Identity = 111/156 (71.15%), Postives = 126/156 (80.77%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. NCBI nr
Match: gi|657994306|ref|XP_008389457.1| (PREDICTED: myb-related protein Hv33-like [Malus domestica]) HSP 1 Score: 235.3 bits (599), Expect = 9.6e-59 Identity = 111/156 (71.15%), Postives = 126/156 (80.77%), Query Frame = 1
BLAST of Cucsa.189540.2 vs. NCBI nr
Match: gi|694361131|ref|XP_009360326.1| (PREDICTED: transcription factor MYB108-like [Pyrus x bretschneideri]) HSP 1 Score: 233.4 bits (594), Expect = 3.7e-58 Identity = 112/155 (72.26%), Postives = 124/155 (80.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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