Cucsa.169260.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.169260.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold01163 : 194550 .. 195062 (-)
Sequence length	513

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAACTGCTAAACCTAATTTAATTGAAAATTCGTTTCATCATATATACTTAATCGTTGTTTTAGTGTAAATTATAAAGAGGATGAGATTGTGATAATCGTGTTAAAAGGATTATGATCCATTTATGTGACGGTAAGGATTGAATAAGGTGTATATGAAATTGAATTATGGCGATGTGTGTTTGTTTGTTTGTTCTTAGATTACATGTGAAGCGTAATTTTTTTGTG

mRNA sequence

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAACTGCTAAACCTAATTTAATTGAAAATTCGTTTCATCATATATACTTAATCGTTGTTTTAGTGTAAATTATAAAGAGGATGAGATTGTGATAATCGTGTTAAAAGGATTATGATCCATTTATGTGACGGTAAGGATTGAATAAGGTGTATATGAAATTGAATTATGGCGATGTGTGTTTGTTTGTTTGTTCTTAGATTACATGTGAAGCGTAATTTTTTTGTG

Coding sequence (CDS)

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAA

Protein sequence

MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIILVLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW*

Homology

[Close]

BLAST of Cucsa.169260.1 vs. TrEMBL
Match: A0A0A0LJB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.8e-51
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of Cucsa.169260.1 vs. TrEMBL
Match: W9QNH7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003219 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 14  PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILVLVRCLASM-DS 73
           PLP P+LL++AV FI +     F   E ++ +E QINW L  VPI+++++VR L+SM DS
Sbjct: 20  PLPYPVLLIMAVTFIFLGTKWYFSFEEVVESAEEQINWVLFVVPILLILIVRWLSSMEDS 79

Query: 74  SPRYYACPCDRGWKMHCRCGRGSA 96
              +   P +R  + H R   GS+
Sbjct: 80  DSLFGMSPWERRRRTHHRPSEGSS 103

[Close]

BLAST of Cucsa.169260.1 vs. TrEMBL
Match: A0A0S3SE83_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G244000 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 14  PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILVLVRCLASMDSS 73
           PLP P+LL+L+++F+  A+S  F   E ++ +E Q  W L A P++++++VR L+SM++S
Sbjct: 19  PLPYPVLLILSLIFLFFAISWYFSYEEVVETAEEQFGWVLFATPVVLILIVRWLSSMENS 78

Query: 74  PRYYA-CPCDRGWKMHCRCGRGSA 96
             + A  P +  W+ H     GS+
Sbjct: 79  EWFSASLPWESRWRTHQGPSEGSS 102

[Close]

BLAST of Cucsa.169260.1 vs. TrEMBL
Match: A0A0L9V7Q2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g191800 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 14  PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILVLVRCLASMDSS 73
           PLP P+LL+L+++F+  A+S  F   E ++ +E Q  W L A P++++++VR L+SM++S
Sbjct: 19  PLPYPVLLILSLIFLFFAISWYFSYEEVVETAEEQFGWVLFATPVVLILIVRWLSSMENS 78

Query: 74  PRYYA-CPCDRGWKMHCRCGRGSA 96
             + A  P +  W+ H     GS+
Sbjct: 79  EWFSASLPWESRWRTHQGPSEGSS 102

[Close]

BLAST of Cucsa.169260.1 vs. TrEMBL
Match: B9H147_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17500g PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-06
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 14  PLPGPILLLLAVVFILIALSSLFPSEP-IDFSEFQINWPLLAVPIIILVLVRCLASMDSS 73
           PLP P+LL+LAV+ I + +S  F  E  ++ +E Q+ W LL VP++++V+VR L+SM++ 
Sbjct: 19  PLPYPVLLILAVLSIFLGMSWFFSYEDMVETTEEQMGWILLVVPLVLIVIVRWLSSMENP 78

Query: 74  PRYYA-CPCDRGWKMHCRCGRGSA 96
              +   P D+  + H R   GS+
Sbjct: 79  DMIFVMSPWDKRRRTHHRPSEGSS 102

[Close]

BLAST of Cucsa.169260.1 vs. TAIR10
Match: AT2G21185.1 (AT2G21185.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-08
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 4  CYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLLA-VPIIILV 63
          C  C+   S   P P+++++ V  +L+ALSS+   E  +   E  ++W LLA VP+ +L 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRCLASMDSSPR-YYACPCDRGWKMHC 89
           VRCL+ +++S R  Y CPC R W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGR-WRCVC 91

[Close]

BLAST of Cucsa.169260.1 vs. TAIR10
Match: AT2G21180.1 (AT2G21180.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 14 PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILVLVRCLASMDS 72
          PLP P+LL+LAV  + +  S  F   E  + +E QIN+ LL +P+ ++VLVR L+SM++
Sbjct: 18 PLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSMEN 76

[Close]

BLAST of Cucsa.169260.1 vs. NCBI nr
Match: gi|700206774|gb|KGN61893.1| (hypothetical protein Csa_2G263880 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.6e-51
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of Cucsa.169260.1 vs. NCBI nr
Match: gi|659115618|ref|XP_008457646.1| (PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 5.3e-49
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVRCL+SMDSSPRYYACPC+RGWKM+CRCG GSAW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of Cucsa.169260.1 vs. NCBI nr
Match: gi|703070008|ref|XP_010088668.1| (hypothetical protein L484_003219 [Morus notabilis])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 14  PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILVLVRCLASM-DS 73
           PLP P+LL++AV FI +     F   E ++ +E QINW L  VPI+++++VR L+SM DS
Sbjct: 20  PLPYPVLLIMAVTFIFLGTKWYFSFEEVVESAEEQINWVLFVVPILLILIVRWLSSMEDS 79

Query: 74  SPRYYACPCDRGWKMHCRCGRGSA 96
              +   P +R  + H R   GS+
Sbjct: 80  DSLFGMSPWERRRRTHHRPSEGSS 103

[Close]

BLAST of Cucsa.169260.1 vs. NCBI nr
Match: gi|920709094|gb|KOM51091.1| (hypothetical protein LR48_Vigan08g191800 [Vigna angularis])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 14  PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILVLVRCLASMDSS 73
           PLP P+LL+L+++F+  A+S  F   E ++ +E Q  W L A P++++++VR L+SM++S
Sbjct: 19  PLPYPVLLILSLIFLFFAISWYFSYEEVVETAEEQFGWVLFATPVVLILIVRWLSSMENS 78

Query: 74  PRYYA-CPCDRGWKMHCRCGRGSA 96
             + A  P +  W+ H     GS+
Sbjct: 79  EWFSASLPWESRWRTHQGPSEGSS 102

[Close]

BLAST of Cucsa.169260.1 vs. NCBI nr
Match: gi|743884360|ref|XP_011037261.1| (PREDICTED: uncharacterized protein LOC105134515 [Populus euphratica])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 14  PLPGPILLLLAVVFILIALSSLFPSEP-IDFSEFQINWPLLAVPIIILVLVRCLASMDSS 73
           PLP P+LL+LAV+ I + +S  F  E  ++ +E Q+ W LL VP++++V+VR L+SM++ 
Sbjct: 19  PLPYPVLLILAVLSIFLGMSWFFSYEDMVETTEEQMGWVLLVVPLVLIVIVRWLSSMENP 78

Query: 74  PRYYA-CPCDRGWKMHCRCGRGSA 96
              +   P DR  + H R   GS+
Sbjct: 79  DMIFVMSPWDRRRRTHHRPSEGSS 102

The following BLAST results are available for this feature:

BLAST of Cucsa.169260.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB6_CUCSA	1.8e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1	[more]
W9QNH7_9ROSA	1.0e-06	40.48	Uncharacterized protein OS=Morus notabilis GN=L484_003219 PE=4 SV=1	[more]
A0A0S3SE83_PHAAN	1.3e-06	35.71	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G244000 PE=...	[more]
A0A0L9V7Q2_PHAAN	1.3e-06	35.71	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g191800 PE=4 SV=1	[more]
B9H147_POPTR	3.9e-06	38.10	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17500g PE=4 SV=1	[more]

BLAST of Cucsa.169260.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21185.1	6.3e-08	37.50	unknown protein	[more]
AT2G21180.1	1.6e-06	44.07	unknown protein	[more]

BLAST of Cucsa.169260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206774\|gb\|KGN61893.1\|	2.6e-51	100.00	hypothetical protein Csa_2G263880 [Cucumis sativus]	[more]
gi\|659115618\|ref\|XP_008457646.1\|	5.3e-49	95.83	PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo]	[more]
gi\|703070008\|ref\|XP_010088668.1\|	1.5e-06	40.48	hypothetical protein L484_003219 [Morus notabilis]	[more]
gi\|920709094\|gb\|KOM51091.1\|	1.9e-06	35.71	hypothetical protein LR48_Vigan08g191800 [Vigna angularis]	[more]
gi\|743884360\|ref\|XP_011037261.1\|	1.9e-06	39.29	PREDICTED: uncharacterized protein LOC105134515 [Populus euphratica]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.169260	Cucsa.169260	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.169260.1	Cucsa.169260.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.169260.1.CDS.1	Cucsa.169260.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.169260.1.three_prime_UTR.1	Cucsa.169260.1.three_prime_UTR.1	three_prime_UTR