Cucsa.160000.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGGCCATTCCAAACACACAGAAATTAAAAGATAAAAAAAGAGGCCATCGATCAATTTGAAGCTATGGTtCCCTTTCAATCCCACCCCTCTTCTCTAAATGACAAGATCACATCAGCAATTCAAGAGCCTGCAGATAATTTAGCAAAGAAGAGGAAGTGGGAAGAGTCGATGATCCCAACGCCACCCTTGAACTCCGTATTAGATATCGAGCTTCACCTCGAAACTCCATTACCTTTCTATTGGCAAAGGTGTCTCGACATCCAGGTCTTTTCTTTTCTCCTGATCGATACAAACCCCTATTTGTTGTATCTTTTTTCTATTTGCTAAAGTGGTTGTATAATTAAATTTACTAGGCCTATTGATCGGTGGTTGTTTATAGTATTAAAATAGGAGGTTTGAGTAGCTTTCTGGGTCAGTAAGTGATTTGATATTATTAATTAGCTTAAATCTCGATAGAGTTAAAGTGTGGTGATGATTTCTTTTTCTTCGTTTTCAGTCGGGCAAGATACACTTTTACAACATGACGACTCAAAAGAGAACATGGAAAGATCCAAGGGACAAACTCGAGAAAGATGATGACGACGACGATGAAGAAGATGACAACCGCTATGACAAGAACGACATGAGTTTGGACCTTGAACTCAACTTGACTTGTGAATCCATGGAGAAGAACAACAATCATCAAACCGTACAAGGTGTGCGTCGTGCTATAAATGACGGAATGATGTTTGGGTTATCGGAAAATTACAACCACAACAACAACAAAAAGGCGGAGATGGTGGCGGCCGTTTGCATGAGGTGCCATTTGTTAGTGATGTTGTGTAAATCTTCGCCGGAGTGTCCTAACTGTAAATTTATGAACTCGCCGCCGGAGCAGACCTCCCCGGCGATGTCCAAGCGCCGGTGTCATCTTTCTTGGTAATTAAAGTGATAATTATATATTTATATAATATAAAGTTAGGAGAAAAATGAAAAACTCTTTAATAATTAATTATAATTATTCTCTTTAATTAATTGTAACTTTAATTTGTATTATTGTAGGACGAGACCCTCAAACTTTCTTCTTTGTAATTTGTATATATACAAATGGGTGTTTCATTTGTTATAAATA CGGCCATTCCAAACACACAGAAATTAAAAGATAAAAAAAGAGGCCATCGATCAATTTGAAGCTATGGTTCCCTTTCAATCCCACCCCTCTTCTCTAAATGACAAGATCACATCAGCAATTCAAGAGCCTGCAGATAATTTAGCAAAGAAGAGGAAGTGGGAAGAGTCGATGATCCCAACGCCACCCTTGAACTCCGTATTAGATATCGAGCTTCACCTCGAAACTCCATTACCTTTCTATTGGCAAAGGTGTCTCGACATCCAGTCGGGCAAGATACACTTTTACAACATGACGACTCAAAAGAGAACATGGAAAGATCCAAGGGACAAACTCGAGAAAgatgatgacgacgacgatgaagaagatgacaaccgctatgacaagaacgacATGAGTTTGGACCTTGAACTCAACTTGACTTGTGAATCCATGGAGAAGAACAACAATCATCAAACCGTACAAGGTGTGCGTCGTGCTATAAATGACGGAATGATGTTTGGGTTATCGGAAAATTACAACCACAACAACAACAAAAAGGCGGAGATGGTGGCGGCCGTTTGCATGAGGTGCCATTTGTTAGTGATGTTGTGTAAATCTTCGCCGGAGTGTCCTAACTGTAAATTTATGAACTCGCCGCCGGAGCAGACCTCCCCGGCGATGTCCAAGCGCCGGTGTCATCTTTCTTGGTAATTAAAGTGataattatatatttatataatataaaGTTAGGAGAAAAATGAAAAACTCtttaataattaattataattattCTCTTTAATTAATTGTAACTTTAATTTGTATTATTGTAGGACGAGACCCTCAAACTTTCTTCTTTGTAATTTGTATATATACAAATGGGTGTTTCATTTGTTATAAATA ATGGTtCCCTTTCAATCCCACCCCTCTTCTCTAAATGACAAGATCACATCAGCAATTCAAGAGCCTGCAGATAATTTAGCAAAGAAGAGGAAGTGGGAAGAGTCGATGATCCCAACGCCACCCTTGAACTCCGTATTAGATATCGAGCTTCACCTCGAAACTCCATTACCTTTCTATTGGCAAAGGTGTCTCGACATCCAGTCGGGCAAGATACACTTTTACAACATGACGACTCAAAAGAGAACATGGAAAGATCCAAGGGACAAACTCGAGAAAGATGATGACGACGACGATGAAGAAGATGACAACCGCTATGACAAGAACGACATGAGTTTGGACCTTGAACTCAACTTGACTTGTGAATCCATGGAGAAGAACAACAATCATCAAACCGTACAAGGTGTGCGTCGTGCTATAAATGACGGAATGATGTTTGGGTTATCGGAAAATTACAACCACAACAACAACAAAAAGGCGGAGATGGTGGCGGCCGTTTGCATGAGGTGCCATTTGTTAGTGATGTTGTGTAAATCTTCGCCGGAGTGTCCTAACTGTAAATTTATGAACTCGCCGCCGGAGCAGACCTCCCCGGCGATGTCCAAGCGCCGGTGTCATCTTTCTTGGTAA MVPFQSHPSSLNDKITSAIQEPADNLAKKRKWEESMIPTPPLNSVLDIELHLETPLPFYWQRCLDIQSGKIHFYNMTTQKRTWKDPRDKLEKDDDDDDEEDDNRYDKNDMSLDLELNLTCESMEKNNNHQTVQGVRRAINDGMMFGLSENYNHNNNKKAEMVAAVCMRCHLLVMLCKSSPECPNCKFMNSPPEQTSPAMSKRRCHLSW*
BLAST of Cucsa.160000.1 vs. TrEMBL
Match: A0A0A0LNT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368900 PE=4 SV=1) HSP 1 Score: 444.5 bits (1142), Expect = 7.1e-122 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. TrEMBL
Match: A0A0D2QM72_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G237500 PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36 Identity = 106/230 (46.09%), Postives = 125/230 (54.35%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. TrEMBL
Match: A0A0D2S760_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G237500 PE=4 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 1.9e-34 Identity = 97/207 (46.86%), Postives = 113/207 (54.59%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. TrEMBL
Match: A0A061FG18_THECC (E3 ubiquitin-protein ligase HUWE1, putative OS=Theobroma cacao GN=TCM_034911 PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 5.6e-34 Identity = 95/221 (42.99%), Postives = 119/221 (53.85%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. TrEMBL
Match: V4T724_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002416mg PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 4.7e-33 Identity = 94/230 (40.87%), Postives = 121/230 (52.61%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. TAIR10
Match: AT4G08910.1 (AT4G08910.1 unknown protein) HSP 1 Score: 78.2 bits (191), Expect = 6.8e-15 Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. TAIR10
Match: AT1G78170.1 (AT1G78170.1 unknown protein) HSP 1 Score: 70.1 bits (170), Expect = 1.8e-12 Identity = 58/181 (32.04%), Postives = 79/181 (43.65%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. TAIR10
Match: AT1G22250.1 (AT1G22250.1 unknown protein) HSP 1 Score: 63.5 bits (153), Expect = 1.7e-10 Identity = 37/101 (36.63%), Postives = 50/101 (49.50%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. NCBI nr
Match: gi|449469873|ref|XP_004152643.1| (PREDICTED: uncharacterized protein LOC101203360 [Cucumis sativus]) HSP 1 Score: 444.5 bits (1142), Expect = 1.0e-121 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. NCBI nr
Match: gi|659088139|ref|XP_008444823.1| (PREDICTED: uncharacterized protein LOC103488058 [Cucumis melo]) HSP 1 Score: 406.4 bits (1043), Expect = 3.1e-110 Identity = 197/212 (92.92%), Postives = 206/212 (97.17%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. NCBI nr
Match: gi|225459312|ref|XP_002284166.1| (PREDICTED: uncharacterized protein LOC100262645 [Vitis vinifera]) HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36 Identity = 98/227 (43.17%), Postives = 124/227 (54.63%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. NCBI nr
Match: gi|823229085|ref|XP_012447283.1| (PREDICTED: uncharacterized protein LOC105770572 [Gossypium raimondii]) HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36 Identity = 106/230 (46.09%), Postives = 125/230 (54.35%), Query Frame = 1
BLAST of Cucsa.160000.1 vs. NCBI nr
Match: gi|657942393|ref|XP_008374058.1| (PREDICTED: uncharacterized protein LOC103437334 [Malus domestica]) HSP 1 Score: 159.1 bits (401), Expect = 8.6e-36 Identity = 93/220 (42.27%), Postives = 128/220 (58.18%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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