Cucsa.152910.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.152910.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	La-related 1
Location	scaffold01124 : 197554 .. 205395 (+)
Sequence length	2459

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTCCCTTCCTTCCTTCTTTCTTTCTTTTGCCCTTCCTATATAAATTCTCTCACAACTCAATTTCACTCTCTGCTTCCCCAAAACCTTCTTCTTCATTTCACACACACCCATCCACCCACTGTTTCTCTCTCTGCTGCTGCTGCTTCATAAACCCTAATACTAATACCCCACTCCTCTATTCCCCCTTCTTCCTCAAACCCCACTTTTtCTTTTTtCAATCCCTACCCAAAAACCACTTCTGTTCACTCTTCATTTTCCCCTTTtCAAATCTCCTTCTATTTCACTTCCTATAATCTCCTTGAAATCCGGGTCTTGCTTGGAATCTGCTGCTCAGAATGGTGATGGTGGATACCGAGGTTACTGACGACAATAAAGACACTAATGGCCGTAAGTCTCCTTGGAAGACCCCGGCTGCTGTCGATGCCAAGGATACGGATGCGCCTGTAATGGGAGCTGATTCTTGGCCTGCACTTGCTGACGCCCAGCGCCCCAAAAGTATCGATGCTACTACTTCTGCCAAGTCTTCTGATTCAGGGGAGGTTTCTGATGGAGTAGCTGCTCTTCAGTCTCCTTCTTCAGGAGCTCAGGTTAACTTCCCCCCcTATTACACTCACACACCCACAAGCCGAAATTGTGGTTTTAGCATATAACGTACCAGAAAATAGCATAAGTTTATTATTCTGGGATGCAACTGTTATTGGTATCATACTTGCAAACTTAAAGAGTCTCATTGTTTTAGTTTGGTAGAGCAACTTTGGATGTTTCTTATAGAAGTTTGATTTTAGCTTCATTCGACGGTTTTGTTTTTtACCCTCATTTAGTGGTCATGAGATGAGTTTGTTTTTTTAGACACTGGCCTGATGCTGTTCAACTAGTGTGCTCAATTTCAGCTGCGACATGCCATTGAATGGTGGATTGGGTTTTCGCATGTTTTCCTCCTTTTTCTCTCTCCCCTTCCACCCGCTTTTGGGGGGTCTCTGAATTTGGATAAATGTAATGCTGCATGATGGCCAATCATTTTTCCGGTGAATAATGCTATCTATGAAGATGTCTGAGCGAGTATCAGGGATCCTTCCAGCCTATTTTTGGAAATATCTTTTACCTCAGTTTCTTCTTCCCTTTCTCCAGCTGATTCCCTCAATTCCTTGTATTCTGTTAATGTTCTTTATTGCTTATAATGTTTTCTTGACCTGTAAGCGACATAAAATCTCTGTGTATGTCAACACAAATGAGTAGTGTAATGTTTAAGAAACTAAGATTTGCTATGTAACTCTTGGTGCAATTTTGAAACGATTCCAGTATGTTTCACAGTGAAGAAAACTAGTTATTAATAGTTCAATATTCCTGTAAATGTCATGTATATGCTTGGCATAAAATTCAATTAGTGAATATCCTGGCAAAGTCCATCACCTATAGCTATGAAATCTTGTTAACGACCCTTGTACATTCCTGCTAGTTATTAATTTCTCTTATCCAATTTATTTTATTTTTtCTCTTGAGTATAATTAAAGTGAGAGATATGACACTTTCAATTAGGGAGGATATGCACAAAAGTCACCTGCCTCTCGGAATTCTAGTTATTCACACAAGAATTTCCAATCACATCATCAAAAACCAGGTTCTAAGCGCAATCCAAATGGTGCTCCTCATGTTTCTGTTCCATTACCTTATCATCAACCACCAATGCCTCCACTTTTTCCACCCATATTACATCCTCCACATCTTGCTGTTCCGGGATATGCTTACCAGCCTCGTCCTGTAGCTGGGGTTGAAGTACATATGATTAAGCCTGGCAACGAGACATCAGTACAAGCTTTTGTTCCACCTGTTGAGCCTCCACCACGTGGTGATCCGAGTGGTTATGTTGTTGGTATTCATAATAGAAGACCTAATATGCAGGAGTCTGGTGTTCATTGGAACCATGGCTGGCATCATCAACGGGGATTTAATCCAAGAGACAACATGTCCATGCAACATGGTGCTGGACCACGCCCTTTCATACGACCCCCTTTTTTCTCTCCAGCTCCTGGCTTCATGGTTGGTCCAAGTTTTCCTGGTAATTATTCCGTCCTAATCTTTGAGGTGTCTTGAGATATGTCATACTGATCTTAACTTCCTTGTCCTTTCTTATTCTCTCAGTACAAAAATCTGCTGCACAAATATTTAAACTGCTCTAAATATAAATATGGTTGGACTGTCCTAACATGAAATTATTATTGCATCTGAATAAAAAAAAaTGAAATTATCGATTGCATTAGTTACCGCCAAAAACTTCTTTGTTATGCAGGACATGGACCTATGTACTATGTTCCGGTTCCACCTCCTGATGCAATTGGGAGACCTCAGTTCATTCCACACCCTATCAATCCAAGGGCTTCAATGCTTCCCCCAGATATGCTAGCACTTCGGACTAACATAATAAAACAAATTGAGTACTATTTTAGGTAGGTCAAGCATCAGTCTAGAAAGAGATTTCCTTCCTATTAGTTGAGAATATTGAGATTTCGATACATATTAATACCAGCCCTTTTATTATGTATTCAATTTATGTGTTCAATGTCGATGCTTTTTGTACCTGAATTTTGACAATGTTTATGCTTAACCTATTATTTATTTTTCGCTGGATTTTCTTTTATTACTCTTAGACAAGTATTTCATTCACATTGATTGAACCCTGTTATTTATATTTTTGTTTGGCCTTCTAATTCCAGTTGGAACAGTGTTAGGCCTCCGGTTGTGTATCAATATGCAAATGTAACATAGGGGGATCACAGGGGATGAGAGAGAAGGGGAGTATATAAGCTTTTGTTAAAAGAGAGAGAAATTAGTTAGAGTTTGGGGAAGGGAGGCCATCTCGAGACAAACATCTGAGATTGTACTCTAGGGTTGAACATTGTACGATCTAGTTTGTTCTTAATAAAGATTGATACCTTCCAAACAGCTCTTTGACAGCTCTGTTGCTGGTTGAGTTAGTGTTGCTCATCTATTTGTAGCATTCCCCTCATCAATGGATATTTTCTCGTTCCTTATCTAATATTGTGCCTTAAGCTAATCCTGCATTTTTCTTTATATTTTGGTTGCAGCGATGAAAATCTGAAGACTGACCATTATCTAATATCTTTGATGGATGATCATGGATGGGTTCCAATATCAGCCATTGCTGAATTCAAAAGGGTATAGTCTTAATATTTATTGGAGCATTTCAGAATGAGCCTTTTTTCCATCTAGAAGATCTGCTGCATGAATTCATGTTATGTATAGTCACAATAGAATGCAACACTGTTATGTACTAATAAGTTCAAAAGTTGTACCTTGCCAATATATTTGGCTTAGAGATTTCACATTTCATTTATCACGTCCTATCAATTTGAAGATTTATTCACCATTAACATTTTGTTTTGGAAATCTGGTTCCAGGTCAAGAAAATGAGCACTGACATTTCGTTTATTCTTGATTCTCTGCATTCATCTGCAAATGTTGAAGTTCAGGTATTTATTATTTAGTTTTACGGCTTTGTTTGTTTCTGTATTTATAGTGCAGAGGGATTTCATATGAGCTAACTGGGGAAATATAGACTTAAAAAATCTGATGACAATAGGTTTTATTAATTTACGGAATTTAATGTATCCCTTTCTTAACTTTGTTCTTTTTAAATTGGGACCCCCCcTCCCcTTCTTTTATCAAAGTTACTTTTTAGAATATAAAAACATTAGTTCAAAGCTTTATTATTGCCAGCTCTTTCCCCTCTAAGATGGATGCAAAATATTTTCAATCGGCTTGAAATAACTCTCTTCTATTTATTTTCACCTAAAATCACGCTCATTCAAAAGAATTTATTTTAAAGCAACTCACCCACCTATTTCATCCAGGCATTTTATGTTTGATTCTTGATTTAGTATGAATGGGAGCGCAAGCTTCTTCTTTTTATTGGTATTTGTATTTAGTTCAATTCATCCTATAAAATGCTTTGAGTGAAAACCTTGAGACTGCAAGGATTCTAGTGCTGCAGTTGGAATGATGAAATTTAAAAATGTTTGACCTTCTGCAACACTCTTTTCATAATGTTGTCGTGTTGAGAAATCTATCTGACTAGAATGCTATCATGTTGAGTGGTGTCAAAAGTTCATAGCTTTAAATACCATCGTTTGACAATGCCTTTATATTTTAATTTTTATTTATTTCAGTTTTTACATTTTAATATGTACTTTCCAACTCTTTCCTGAACGCATTCAGAAATTAAATATCTTTCTCATTCTTATTCTCATTTTAAGATAGCGGGAATGTTGGGATGGCATCTTGGCTACATTTTGCACTTGTACAAGCATTCAGTTTCTTTTATTTATTCTAATGAATGAAACATTTTTCCTAGTGTTGCCAAGGTTTCATTTCTCTTGGAGTTGCTGCATTGGTTTTtAAGTTGGGTGTGGATCATACTCAAATGTGATAAATAAAGATACCGAATTGATGCAGGACAATGAAAAGGAAGAGAGTAGAAAGATGAAGAGATAGGGGAAGAGAGAAGTGTACTTTTGATGAGTTTGGTGTTTGAGATTCTGTTTGGTCCTTTTTCATATGGATGAATTTTGTAGGTTTCATTTTTAGTGGTGAAATTGTGCATTGTGTTTGCTTCACCAGTTTCTATTAAGCTGGTTACTTGATTTGTAGAGGATGCATAGATAGAGCAGAAGTGAACGGAAACTAGTGTTGCATTAGGGATCTAAGGATAAATTTAAAAGTATTCATTTGAATTTGAGGCAGATTGGTTAGATGTGTGCTTGAATAATGTGAACCTCAAATATCAATGTGTTGTCTCATGTAGCAAAATCATAGTCCATTATGATCATGTACTTAAACAGTAGCATAATTTTGTGACACGTATATGTAGGGCTTTCCATTTGAATACCTTCTGCATTTCCAATACAACTTCTGTACTCTGTGTGTGCAAATGTTCTTGAAGAAGAAGGATACAAAGAGTATTCAAGTATTGAAATTGAATTAGAAACTACACGGGCTTGTAATAAAATGACATTCTTTTTACTTTACCTTACAACCTTAATCTTATGTAGGGAGACAAGGTGCGAAAACGTGATGAATGGTCAAAGTGGGTTCCAGTTTCTGCAGACTCTAAATCAACATTAAACGTTGAGACCTCATCCATTCCAGTGGATGAAAGTACCAACTCTTTGGTGGACGAGAATGCTTCAGATGGTTCTAGGGTGCTGGCATCGAATGATAATATCAAATCTTCACTACTTCAAGGTTGTTCTCGGGAGCAGTTCTCAAGCAGGGACAGCCCAGAAGTAGCTAATCTAGACATAGTGGAAGGTGATAGTTTGATTGTTCAGCTTGATGGTGGAGTAAAAAAGTATTGCTATGAATTTAGTACAGAAAGGGGAGGTCAATTTAATAACCGTCTGTTGGTTTTGTGCTAATTTTAACTTTATTCAGAACATTCTAGTGGAACTGTTCCTCCTCAAGGCATAAAGATTTCATCAAACGTTGGTGCACATGATGTTGATGACCTTTCAAGCCAATTTTCAAGCACTTTTATGCTCGATGAAGAGCTAGAGATTGAACAAAAAGCGATAAAGAAAGATGATTTGACTTCAAACGGAAGGTATATAGTTGATTCTAGCTTTTGTAATTTTtATTTTTCTTTCCTTGTATTGTCACCGTTGGGATTATATTTAAGAGGATAGAATGGAACAAAAAAAGGTTTTGTCTTCATAAAGAGGTATGGGAATGATCCATGTTTGTTTATTGTTCTTGGTCACTTGGTGGAGGGATTTCAATCTGTTAATCTCACTTGGTCAAAGACTACATTCTTATACGCTAAGACATCGTTTTGTTGGAAAAACAAAAGGTTTGTGGACAATCTTTTTGTGCAGCTTCTTTTGGGGAAAAAAaTAAAaCAAAGCAGAGGATTTAAGTCTTAGGGTTTTCTCTATGGTGGGTTTTTTTTtGGAGAGGGAGGGGGCTTTTTTACTATTCCTCTGCTTCCATTCCCCCACCCcACCCCCCACATTTTGAGTGTTTTTCAACAATTCTGCTTGGGAGACTTTTTGTTCTCCGTTAGATCCTATTTTATGTAAGACTTGTCTAAATTCTCTTTTTCATATGCATACAAACTCTTTGATTTCTTCTTCATATCTAATTTCTCCATTTCTTCCCTGCATAACTACCATCTATGGTAAATCTATCTTTTCTCTCTCTCATTTTGTTGTCTTGCATGAATTAGTTTTATAGATTTTATCTTACAATGTATCTACCTGGATTGCACCAATGTTATGTGGATCCATTGTTTTCCTTAACACACGCACACACACATCTTTTCACTCAGATCCATTGATGTTGTGATACAATTTGTAGAATGTTTGAAGCTTGTTTTTGTTCTCATTTCCTTAACCTTTGATGTATCATCCACCAAGGATTGACGAAGATGATGACGAGATTGCTGTCAATGATCAAGATGTTCAGAGACTTATTATTGTCACTCAGGTAGATGTTATTGGGAAAAATGGTTTGCTTCCAGGTTGAGCAACTGCAGCTTGCTTTAAGAACATTAATTTTTTGTGACCTTCGGTTTCAAATGTCTTTTGTAACTTTTATATAGGTGTTATTTTGCATACTTGGAGTCCTTTCCTGTTGGAGGAGGTGTTTTTGTGGGCTAGGCGTTTTTGTATGCTGGTGTATTTTTCTTTTTTtCTCAATGAAAGTTATTATTCTTATATAAAaTAAAAATTCGATTCGTTCTCTCCCTCAAATATTCTTGTTGAGAAGTGTCAGAAATCAATAAAAAAAaTTGTTCCAACTTCTTTAAATCAGAGGGTTTGCTTGGTTTGTGTTCCGGAAGACAACTTTCTACTTCAATGGAAATAAAACTATCAGTGCATTTGTTGGTCGTAGTCACCCTCTATCTAAAATTGGGGCACTGTTATCTTTATTTGGTTGAATTTTTTGTTTCTGATAAAAAGCAGTTGTGATAGTAGCTAATTAAATGAATTTAAGATAACGGTACTTTCAAATGGATTTGGTGACAGATACTGTTCTTTATTTGTATTTTATGAGACTGTATTCCCCTTGCTGCTGATGCCAATTCTTGAATTTCCTTTTCTTTTTAATCATCCAGAAACAGTGCACGTATAAACAATTAATGTCCTATTCCATTTCTTTTATGGATTTATTTTAAAACAAAATTTCCTCCATAATTGCTCTGCAGAATCGTGCCATCGAAAAAAGGTCTACAAGTGGAGGCAAAGAATCAAAATCAATATCTAAAGAGCTTGCTTCAACAATAAATGATGGCCTTTACTTCTACGAGCAAGTTGAGAATTTACCATGCATCCTATTTTGTTTTTATGCAATTCATTTCCCTAATTTGAATGATTGTTAAAGTTGTTTTAACATGCTAAGGTACTGGAAAAAAAGCGATCTAATCGAAAAAAGAGCAAGTGCAACTCAGAGAATAGGGAGGGAACCTCACGATTATCTAGCAGTGCTACAGGATCAGCACGGTCAAAACCTAGTGAAAATTCTGCAGGATACTGTGGTTTGGATGAAATTGGGAATGCTAGTCCCAGGAAGAAACAAACTAAAACCTTCCCTAAACAACAATCTTCACATAAGCAACGCTTTTTCTCCAGCAACTTTAGAAATCATGGAACGAGTCGGAACTCTCTTGGCATTGTAGCAGAGAGTCCACCTAGTAATTCTGTAGGTTTTTtCTTTGGTTCTACCCCTCCTGATAGTACAAGGTTAGTCTGAAAGAGCCACTACCTGTGTAAAATTCCATAACATGCACATTTCTCTGTTGCAAAAAAGGAAGTTAATTTGCAGGAC

mRNA sequence

ttgttcccttccttccttctttctttctttTGCCCTTCCTATATAAATTCTCTCACAACTCAATTTCACTCTCTGCTTCCCCAAAACCTTCTTCTTCATTTCACACACACCCATCCACCCACTGTTTCTCTCTCTGCTGCTGCTGCTTCATAAACCCTAATACTAATACCCCACTCCTCTATTCCCCCTTCTTCCTCAAACCCCACTTTTTCTTTTTTCAATCCCTACCCAAAAACCACTTCTGTTCACTCTTCATTTTCCCCTTTTCAAATCTCCTTCTATTTCACTTCCTATAATCTCCTTGAAATCCGGGTCTTGCTTGGAATCTGCTGCTCAGAATGGTGATGGTGGATACCGAGGTTACTGACGACAATAAAGACACTAATGGCCGTAAGTCTCCTTGGAAGACCCCGGCTGCTGTCGATGCCAAGGATACGGATGCGCCTGTAATGGGAGCTGATTCTTGGCCTGCACTTGCTGACGCCCAGCGCCCCAAAAGTATCGATGCTACTACTTCTGCCAAGTCTTCTGATTCAGGGGAGGTTTCTGATGGAGTAGCTGCTCTTCAGTCTCCTTCTTCAGGAGCTCAGGGAGGATATGCACAAAAGTCACCTGCCTCTCGGAATTCTAGTTATTCACACAAGAATTTCCAATCACATCATCAAAAACCAGGTTCTAAGCGCAATCCAAATGGTGCTCCTCATGTTTCTGTTCCATTACCTTATCATCAACCACCAATGCCTCCACTTTTTCCACCCATATTACATCCTCCACATCTTGCTGTTCCGGGATATGCTTACCAGCCTCGTCCTGTAGCTGGGGTTGAAGTACATATGATTAAGCCTGGCAACGAGACATCAGTACAAGCTTTTGTTCCACCTGTTGAGCCTCCACCACGTGGTGATCCGAGTGGTTATGTTGTTGGTATTCATAATAGAAGACCTAATATGCAGGAGTCTGGTGTTCATTGGAACCATGGCTGGCATCATCAACGGGGATTTAATCCAAGAGACAACATGTCCATGCAACATGGTGCTGGACCACGCCCTTTCATACGACCCCCTTTTTTCTCTCCAGCTCCTGGCTTCATGGTTGGTCCAAGTTTTCCTGGACATGGACCTATGTACTATGTTCCGGTTCCACCTCCTGATGCAATTGGGAGACCTCAGTTCATTCCACACCCTATCAATCCAAGGGCTTCAATGCTTCCCCCAGATATGCTAGCACTTCGGACTAACATAATAAAACAAATTGAGTACTATTTTAGCGATGAAAATCTGAAGACTGACCATTATCTAATATCTTTGATGGATGATCATGGATGGGTTCCAATATCAGCCATTGCTGAATTCAAAAGGGTCAAGAAAATGAGCACTGACATTTCGTTTATTCTTGATTCTCTGCATTCATCTGCAAATGTTGAAGTTCAGGGAGACAAGGTGCGAAAACGTGATGAATGGTCAAAGTGGGTTCCAGTTTCTGCAGACTCTAAATCAACATTAAACGTTGAGACCTCATCCATTCCAGTGGATGAAAGTACCAACTCTTTGGTGGACGAGAATGCTTCAGATGGTTCTAGGGTGCTGGCATCGAATGATAATATCAAATCTTCACTACTTCAAGGTTGTTCTCGGGAGCAGTTCTCAAGCAGGGACAGCCCAGAAGTAGCTAATCTAGACATAGTGGAAGAACATTCTAGTGGAACTGTTCCTCCTCAAGGCATAAAGATTTCATCAAACGTTGGTGCACATGATGTTGATGACCTTTCAAGCCAATTTTCAAGCACTTTTATGCTCGATGAAGAGCTAGAGATTGAACAAAAAGCGATAAAGAAAGATGATTTGACTTCAAACGGAAGGATTGACGAAGATGATGACGAGATTGCTGTCAATGATCAAGATGTTCAGAGACTTATTATTGTCACTCAGAATCGTGCCATCGAAAAAAGGTCTACAAGTGGAGGCAAAGAATCAAAATCAATATCTAAAGAGCTTGCTTCAACAATAAATGATGGCCTTTACTTCTACGAGCAAGTACTGGAAAAAAAGCGATCTAATCGAAAAAAGAGCAAGTGCAACTCAGAGAATAGGGAGGGAACCTCACGATTATCTAGCAGTGCTACAGGATCAGCACGGTCAAAACCTAGTGAAAATTCTGCAGGATACTGTGGTTTGGATGAAATTGGGAATGCTAGTCCCAGGAAGAAACAAACTAAAACCTTCCCTAAACAACAATCTTCACATAAGCAACGCTTTTTCTCCAGCAACTTTAGAAATCATGGAACGAGTCGGAACTCTCTTGGCATTGTAGCAGAGAGTCCACCTAGTAATTCTGTAGGTTTTTTCTTTGGTTCTACCCCTCCTGATAGTACAAGGTTAGTCTGAAAGAGCCACTACCTGTGTAAAATTCCATAACATGCACATTTCTCTGTTGCAAAAAAGGAAGTTAATTTGCAGGAC

Coding sequence (CDS)

ATGGTGATGGTGGATACCGAGGTTACTGACGACAATAAAGACACTAATGGCCGTAAGTCTCCTTGGAAGACCCCGGCTGCTGTCGATGCCAAGGATACGGATGCGCCTGTAATGGGAGCTGATTCTTGGCCTGCACTTGCTGACGCCCAGCGCCCCAAAAGTATCGATGCTACTACTTCTGCCAAGTCTTCTGATTCAGGGGAGGTTTCTGATGGAGTAGCTGCTCTTCAGTCTCCTTCTTCAGGAGCTCAGGGAGGATATGCACAAAAGTCACCTGCCTCTCGGAATTCTAGTTATTCACACAAGAATTTCCAATCACATCATCAAAAACCAGGTTCTAAGCGCAATCCAAATGGTGCTCCTCATGTTTCTGTTCCATTACCTTATCATCAACCACCAATGCCTCCACTTTTTCCACCCATATTACATCCTCCACATCTTGCTGTTCCGGGATATGCTTACCAGCCTCGTCCTGTAGCTGGGGTTGAAGTACATATGATTAAGCCTGGCAACGAGACATCAGTACAAGCTTTTGTTCCACCTGTTGAGCCTCCACCACGTGGTGATCCGAGTGGTTATGTTGTTGGTATTCATAATAGAAGACCTAATATGCAGGAGTCTGGTGTTCATTGGAACCATGGCTGGCATCATCAACGGGGATTTAATCCAAGAGACAACATGTCCATGCAACATGGTGCTGGACCACGCCCTTTCATACGACCCCCTTTTTTCTCTCCAGCTCCTGGCTTCATGGTTGGTCCAAGTTTTCCTGGACATGGACCTATGTACTATGTTCCGGTTCCACCTCCTGATGCAATTGGGAGACCTCAGTTCATTCCACACCCTATCAATCCAAGGGCTTCAATGCTTCCCCCAGATATGCTAGCACTTCGGACTAACATAATAAAACAAATTGAGTACTATTTTAGCGATGAAAATCTGAAGACTGACCATTATCTAATATCTTTGATGGATGATCATGGATGGGTTCCAATATCAGCCATTGCTGAATTCAAAAGGGTCAAGAAAATGAGCACTGACATTTCGTTTATTCTTGATTCTCTGCATTCATCTGCAAATGTTGAAGTTCAGGGAGACAAGGTGCGAAAACGTGATGAATGGTCAAAGTGGGTTCCAGTTTCTGCAGACTCTAAATCAACATTAAACGTTGAGACCTCATCCATTCCAGTGGATGAAAGTACCAACTCTTTGGTGGACGAGAATGCTTCAGATGGTTCTAGGGTGCTGGCATCGAATGATAATATCAAATCTTCACTACTTCAAGGTTGTTCTCGGGAGCAGTTCTCAAGCAGGGACAGCCCAGAAGTAGCTAATCTAGACATAGTGGAAGAACATTCTAGTGGAACTGTTCCTCCTCAAGGCATAAAGATTTCATCAAACGTTGGTGCACATGATGTTGATGACCTTTCAAGCCAATTTTCAAGCACTTTTATGCTCGATGAAGAGCTAGAGATTGAACAAAAAGCGATAAAGAAAGATGATTTGACTTCAAACGGAAGGATTGACGAAGATGATGACGAGATTGCTGTCAATGATCAAGATGTTCAGAGACTTATTATTGTCACTCAGAATCGTGCCATCGAAAAAAGGTCTACAAGTGGAGGCAAAGAATCAAAATCAATATCTAAAGAGCTTGCTTCAACAATAAATGATGGCCTTTACTTCTACGAGCAAGTACTGGAAAAAAAGCGATCTAATCGAAAAAAGAGCAAGTGCAACTCAGAGAATAGGGAGGGAACCTCACGATTATCTAGCAGTGCTACAGGATCAGCACGGTCAAAACCTAGTGAAAATTCTGCAGGATACTGTGGTTTGGATGAAATTGGGAATGCTAGTCCCAGGAAGAAACAAACTAAAACCTTCCCTAAACAACAATCTTCACATAAGCAACGCTTTTTCTCCAGCAACTTTAGAAATCATGGAACGAGTCGGAACTCTCTTGGCATTGTAGCAGAGAGTCCACCTAGTAATTCTGTAGGTTTTTtCTTTGGTTCTACCCCTCCTGATAGTACAAGGTTAGTCTGA

Protein sequence

MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTSAKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGAPHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVPPVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARSKPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAESPPSNSVGFFFGSTPPDSTRLV*

Homology

[Close]

BLAST of Cucsa.152910.1 vs. Swiss-Prot
Match: LRP1A_ARATH (La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 4.0e-135
Identity = 293/692 (42.34%), Postives = 400/692 (57.80%), Query Frame = 1


Query: 2   VMVDTE--VTDDNKDTN-----GRKSPWKTPAAVDAKDTDAPVMGADSWPALADA-QRPK 61
           +M +TE  V DD +        G KSPWKT  +   +  DAPVMGA SWPALADA Q+P+
Sbjct: 1   MMAETEGSVADDRELITREGGIGTKSPWKTTTS-PVETIDAPVMGAHSWPALADAAQQPR 60

Query: 62  SIDATTSAKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGS 121
             +    A +  S  +   +  + +P+   Q     KS     ++  HKN    H KPG 
Sbjct: 61  PKNPPAPAPAPPSKNIPTSIP-IPTPAVTGQA----KSKGGGKANPGHKNPSGRHSKPGP 120

Query: 122 KRNPNGAP---HVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMI-KP 181
           + N NG P   ++   +PYH PP PP+ P     PH A P + Y P P   V V  + + 
Sbjct: 121 RSNQNGPPPPPYLVHAVPYHPPPFPPMVPL----PHAAGPDFPYAPYPPYPVPVPPVTES 180

Query: 182 GNETSVQAF-VPPVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMS 241
           GNE  VQA  +PPV P P+GDP          +P            W HQRGF+PR+   
Sbjct: 181 GNEKQVQASPLPPVLPAPQGDPG---------KP------------WPHQRGFDPRN--- 240

Query: 242 MQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRP---QFIPHPINP 301
           M  GAGPR F RPPF  PAPGF+VGP     GP+YY+P PPP AI  P   +F P+P+N 
Sbjct: 241 MPQGAGPRNFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVNQ 300

Query: 302 RASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMS 361
              +L P+ L LR  ++KQ+EYYFSDENL+ DHYLISLMD+ GWVP   IA FKRVK M+
Sbjct: 301 GPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMT 360

Query: 362 TDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLV 421
            D+ FI+ +L  S +VEVQGD++RKRD+WS W+P S   K + + ET            +
Sbjct: 361 MDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWIPAS---KKSTSAET------------I 420

Query: 422 DENASDGSRVLASNDNIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKIS 481
            +   D  + + S DN  +   +G S+   S   S E A       + SG +       S
Sbjct: 421 GDGDKDSPKSITSGDNFGNPS-KGSSKPTVSDFSS-EGAQSSRTNNYKSGNLK------S 480

Query: 482 SNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRL 541
           S     +V+DLS+ FS+TF+LDEEL++E ++ +K  L+ +  I+ +DD++AV+DQD+Q+L
Sbjct: 481 SADEKRNVEDLSNDFSNTFLLDEELDLEHRSPRKSGLSMSKSIEYEDDDMAVDDQDIQKL 540

Query: 542 IIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENRE 601
           +IVTQN      +  GG E+K+I KELASTINDGLY++EQ L+KKRS R+K+  + + ++
Sbjct: 541 VIVTQNSGKSDGAGIGGTEAKNIPKELASTINDGLYYFEQELKKKRSGRRKNNSHLDTKD 600

Query: 602 GTSRLSSSATGSARSKPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFR 661
           G  +          +K  ENSA   G +E G  + R+KQ K   K  ++H +RFFSSN R
Sbjct: 601 GKIKSGE----GLNTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTAHARRFFSSNIR 624

Query: 662 NHGTSRNSLGIVAESPPSNSVGFFFGSTPPDS 678
           N+G        ++ESPPS+S+GFFFGSTPPDS
Sbjct: 661 NNGN-------ISESPPSSSIGFFFGSTPPDS 624

[Close]

BLAST of Cucsa.152910.1 vs. Swiss-Prot
Match: LRP1C_ARATH (La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 8.7e-37
Identity = 131/458 (28.60%), Postives = 196/458 (42.79%), Query Frame = 1


Query: 13  KDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQR-PKSIDATTSAKS----SDSG 72
           +D  G+K  WK P+  +      PVMGA SWPAL++  + P +  ++ S KS      S 
Sbjct: 107 QDNAGKKPVWKRPS--NGASEVGPVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSS 166

Query: 73  EVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGAPHVSVPL 132
             S  V   Q  ++ +     Q   A+ N + +H   +S  Q+ G+  + NG        
Sbjct: 167 SASSSVPVTQGIANASVPAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGT------- 226

Query: 133 PYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVPPVEPPPR 192
              QP     F  +  P H         P P    + +     N           E P +
Sbjct: 227 -VSQPSAQGSFTEL--PSH--------NPSPRGQNQKNGFASQNHGG-------TENPSQ 286

Query: 193 GDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR--PPFFS 252
            D      G H++    + +  H N  W  QR FN R+  + Q   G   F+R   P   
Sbjct: 287 RDSYRNQNGNHHQSHGGRRNQEHGNQNWTFQRSFNGREG-NAQSQRGTPAFVRHPSPTVQ 346

Query: 253 PAPGFMVGPSFPGHGPM--------YYVPVPPPDAIGR-PQFIPHPINPRASMLPPDMLA 312
           P P FM    FP H P         YY  +P    I   PQF  H  +P           
Sbjct: 347 PIPQFMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPHGPQFFYHYQDP----------P 406

Query: 313 LRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLH 372
           L   + KQI+YYFSDENL TD YL   M++ G+VP+  +A FK+V +++ +I  I+++L 
Sbjct: 407 LHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQ 466

Query: 373 SSANVEVQGDKVRKRDEWSKWV---------PVSADSKSTLNVETSSIPVDESTNSLVDE 432
           +S +VEVQGD +RKRD W  WV         P S D    +     ++ VD+S+   +  
Sbjct: 467 NSPHVEVQGDFIRKRDNWQNWVLRRNPTGSGPQSVDRADAVAKRLGNLSVDQSSADPIGG 522

Query: 433 NASDGSRVLASNDNIKSSLLQGCSREQFSSRDSPEVAN 446
           ++S     L   + +     Q  S    S+ ++P+ AN
Sbjct: 527 SSSQ----LQPTEALSDDQQQSSSTAPVSNHNAPDGAN 522

[Close]

BLAST of Cucsa.152910.1 vs. Swiss-Prot
Match: LAR1B_HUMAN (La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 4.8e-27
Identity = 94/310 (30.32%), Postives = 155/310 (50.00%), Query Frame = 1


Query: 291 PPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISF 350
           P +   L+  I +QIEYYFS ENL+ D +L   MD+ G++PIS IA F+RV+ ++T+++ 
Sbjct: 209 PVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNL 268

Query: 351 ILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIP-----VDESTNSLV 410
           IL++L  S  VE+  +K+RK+ E  KW       +S    + S +      V        
Sbjct: 269 ILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSH 328

Query: 411 DENASDGSRV---LASNDNIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGI 470
            E+A +  R+   L+   N ++S+LQ  SR    S   P++ +   +E        P  +
Sbjct: 329 TESAPNSPRIGSPLSPKKNSETSILQAMSRG--LSTSLPDLDSEPWIEVKKRHQPAPVKL 388

Query: 471 KISSNVGAHDVDDLSS-----QFSSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAV 530
           + S +V    ++ L S     Q    F+ DEE+E   +  +K+  T      ++D +  +
Sbjct: 389 RESVSVPEGSLNQLCSSEEPEQEELDFLFDEEIE---QIGRKNTFTD---WSDNDSDYEI 448

Query: 531 NDQDVQRLIIVTQNRAIEKRSTSGGKESKSISK-----ELASTINDGLYFYEQVLEKKRS 583
           +DQD+ +++IVTQ     K+   G +    +S+     ELA  INDGLY+YEQ L  +  
Sbjct: 449 DDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSELAKVINDGLYYYEQDLWMEED 508

[Close]

BLAST of Cucsa.152910.1 vs. Swiss-Prot
Match: LARP1_MOUSE (La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-24
Identity = 111/365 (30.41%), Postives = 165/365 (45.21%), Query Frame = 1


Query: 293 DMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFIL 352
           D   L+  I +QIEYYFS +NL+ D +L   MD  G++PI+ IA F RV+ ++TDIS I 
Sbjct: 374 DQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIF 433

Query: 353 DSLHSSANVEVQGDKVRKRDEWSKWV----PV----SADSKSTLNV-----------ETS 412
            +L  S  VE+  +KVR+R+E  KW     P+      D    LN            ET 
Sbjct: 434 AALKDSKVVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQKETE 493

Query: 413 SIPVDESTNSLVDENASDGSRVLASNDNIKSSL--LQGCSREQFSSRDSPEVANLDIVEE 472
           S P      + V     + S +      + +SL  L   S  +   R  P  A     EE
Sbjct: 494 SAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSESWIEVKKRPRPSPARPKKPEE 553

Query: 473 --HSSGTVPPQGIKISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRID 532
              S  T  PQ +  S  + + D D+   Q    F+ DEE+E  Q   +K+  T+     
Sbjct: 554 PRFSHPTALPQQLP-SQQLMSKDQDE---QEELDFLFDEEME--QMDGRKNTFTA---WS 613

Query: 533 EDDDEIAVNDQDVQRLIIVTQNRAIEKRSTSGGKESK-----SISKELASTINDGLYFYE 592
           E+D +  ++D+DV +++IVTQ     +R   G +         +S ELA  INDGL++YE
Sbjct: 614 EEDSDYEIDDRDVNKILIVTQTPPYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYE 673

Query: 593 QVL--EKKRSNRKKSKCNSENREGTSRLSSSATGSARSKPSENSAGYCGLDEIGNASPRK 628
           Q L  EK      + K   EN +  + +S     +   +P  +        E+    PR 
Sbjct: 674 QDLWTEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPN-----QEVPPGPPRF 724

[Close]

BLAST of Cucsa.152910.1 vs. Swiss-Prot
Match: LARP1_HUMAN (La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-23
Identity = 109/363 (30.03%), Postives = 165/363 (45.45%), Query Frame = 1


Query: 293 DMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFIL 352
           D   L+  I +QIEYYFS +NL+ D +L   MD  G++PI+ IA F RV+ ++TDIS I 
Sbjct: 399 DQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIF 458

Query: 353 DSLHSSANVEVQGDKVRKRDEWSKW-VPVSADSKST-----LNV-----------ETSSI 412
            +L  S  VE+  +KVR+R+E  KW +P   D   T     LN            ET S 
Sbjct: 459 AALKDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESA 518

Query: 413 PVDESTNSLVDENASDGSRVLASNDNIKSSLLQGCSRE--QFSSRDSPEVANLDIVEE-- 472
           P      + V     + S +      + +SL    S    +   R  P  A     EE  
Sbjct: 519 PGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESR 578

Query: 473 HSSGTVPPQGIKISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRIDED 532
            S  T  PQ +  S  + + D D+   Q    F+ DEE+  EQ   +K+  T+     ++
Sbjct: 579 FSHLTSLPQQLP-SQQLMSKDQDE---QEELDFLFDEEM--EQMDGRKNTFTA---WSDE 638

Query: 533 DDEIAVNDQDVQRLIIVTQNRAIEKRSTSGGKESK-----SISKELASTINDGLYFYEQV 592
           + +  ++D+DV +++IVTQ     +R   G +         +S ELA  INDGL++YEQ 
Sbjct: 639 ESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQD 698

Query: 593 L--EKKRSNRKKSKCNSENREGTSRLSSSATGSARSKPSENSAGYCGLDEIGNASPRKKQ 628
           L  EK      + K   EN +  + +S     +   +P  +        E+    PR +Q
Sbjct: 699 LWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPN-----QEVPPGPPRFQQ 747

[Close]

BLAST of Cucsa.152910.1 vs. TrEMBL
Match: A0A0A0KWS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269710 PE=4 SV=1)

HSP 1 Score: 1384.4 bits (3582), Expect = 0.0e+00
Identity = 678/678 (100.00%), Postives = 678/678 (100.00%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS
Sbjct: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60

Query: 61  AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGA 120
           AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGA
Sbjct: 61  AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGA 120

Query: 121 PHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVP 180
           PHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVP
Sbjct: 121 PHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVP 180

Query: 181 PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR 240
           PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR
Sbjct: 181 PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR 240

Query: 241 PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN 300
           PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN
Sbjct: 241 PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN 300

Query: 301 IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSAN 360
           IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSAN
Sbjct: 301 IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSAN 360

Query: 361 VEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASND 420
           VEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASND
Sbjct: 361 VEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASND 420

Query: 421 NIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQF 480
           NIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQF
Sbjct: 421 NIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQF 480

Query: 481 SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTS 540
           SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTS
Sbjct: 481 SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTS 540

Query: 541 GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS 600
           GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS
Sbjct: 541 GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS 600

Query: 601 KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES 660
           KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES
Sbjct: 601 KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES 660

Query: 661 PPSNSVGFFFGSTPPDST 679
           PPSNSVGFFFGSTPPDST
Sbjct: 661 PPSNSVGFFFGSTPPDST 678

[Close]

BLAST of Cucsa.152910.1 vs. TrEMBL
Match: A0A061GWU6_THECC (Lupus la ribonucleoprotein, putative isoform 3 OS=Theobroma cacao GN=TCM_042031 PE=4 SV=1)

HSP 1 Score: 695.7 bits (1794), Expect = 5.8e-197
Identity = 376/714 (52.66%), Postives = 478/714 (66.95%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVM + E  DD K+    KSPWKTP     K  DA VMG  SWP L   Q+         
Sbjct: 1   MVMAENEAGDDQKEV---KSPWKTPVIDGEKAADASVMGTQSWPDLGGTQQ--------- 60

Query: 61  AKSSDSGEVS-DGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNG 120
             ++D+ EV+ DG A   S   GA G   QKS  S N++ SHK+  + HQK GSKRNPN 
Sbjct: 61  --TTDNPEVAADGSAPAPSVEQGAAG--QQKSNGSGNTNASHKHSSARHQKSGSKRNPNA 120

Query: 121 APHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQP--RPVAGVEVHMIKPGNETSVQA 180
            P   VPLPY+QPP+PP+F  ++ PPH+AV GYAYQP   P  G+E  ++  G+ET++QA
Sbjct: 121 TPRFPVPLPYYQPPIPPVFHAMVPPPHIAVSGYAYQPVPGPFPGIESQLVNSGSETTMQA 180

Query: 181 FVPP---------VEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMS 240
           F PP         V+PPPRGDP+ Y     NRRPNMQE G H N GW+HQR FNPR+ + 
Sbjct: 181 FGPPLQGIDPGRNVQPPPRGDPNAYPANFSNRRPNMQEPGGHLNPGWNHQRAFNPRETIP 240

Query: 241 MQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRP---QFIPHPINP 300
           MQ G GPRPF+RPPFF PAPGFMVGPSFPG   + Y+P+PPP +I  P   +F+P+PINP
Sbjct: 241 MQQGVGPRPFVRPPFFGPAPGFMVGPSFPG--AVCYMPIPPPGSIRGPHPPRFVPYPINP 300

Query: 301 RASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMS 360
             +M PP+   LR NI+KQIEYYFSDENL+TDHYLISLMDD GWVPISAIA+FKRVK+MS
Sbjct: 301 GTAMYPPETATLRANIVKQIEYYFSDENLQTDHYLISLMDDQGWVPISAIADFKRVKRMS 360

Query: 361 TDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIP---VDESTN 420
           TDI FILD+L SS+ VEVQGDK+R+RDEWSKW+P  A SK++L+ E  +     V+  T+
Sbjct: 361 TDIKFILDALLSSSTVEVQGDKIRRRDEWSKWIP--ASSKTSLSSEAPATRYEFVENVTD 420

Query: 421 SLVDENASDGSRVLASNDNIKSSLLQGC--------SREQFSSRDSPEVANLDIV---EE 480
           S  + N ++ +    S +N+K  L  G         +  + + R++ + A++ ++    +
Sbjct: 421 SCGNGNTNEDNSRDTSEENLKFPLDSGSLEHVSPEGNAAEVTHRNNCKHADVPVLLNDAD 480

Query: 481 HSSGTVP-----PQGIKISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNG 540
            S G  P      + ++ISS+V   +V DLS+ F+ TFMLDEELE+EQK +K  +L +  
Sbjct: 481 QSQGVGPVRFTDHRSVEISSDVTVQNVADLSNDFAHTFMLDEELELEQKPLK--NLLALN 540

Query: 541 RIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQV 600
           R+D +DDE+ VNDQDV RL+IVTQN      S +G K+SKSIS ELA+ INDGLYFYEQ 
Sbjct: 541 RMDYEDDEMVVNDQDVHRLVIVTQNSGTGDGSKAGAKDSKSISSELAAVINDGLYFYEQE 600

Query: 601 LEKKRSNRKKSKCNSENREGTSRLSSS---ATGSARSKPSENSAGYCGLDEIGNASPRKK 660
           L+ KR +R+K+    EN++G  R   S   A G +  K  EN AG  GL+E G AS R+K
Sbjct: 601 LKTKRFSRRKNNSIYENKDGYPRSPRSPRGALGVSNLKTGENVAGSSGLEESGGASSRRK 660

Query: 661 QTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAESPPSNSVGFFFGSTPPDS 678
           Q K F KQQS HKQRFFSSN +NHGTSRNS+ I++ESPPSNSVG+FFGSTPPDS
Sbjct: 661 QNKGFAKQQSFHKQRFFSSNLKNHGTSRNSIAIISESPPSNSVGYFFGSTPPDS 692

[Close]

BLAST of Cucsa.152910.1 vs. TrEMBL
Match: A0A061GY17_THECC (Lupus la ribonucleoprotein, putative isoform 1 OS=Theobroma cacao GN=TCM_042031 PE=4 SV=1)

HSP 1 Score: 687.6 bits (1773), Expect = 1.6e-194
Identity = 371/698 (53.15%), Postives = 463/698 (66.33%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVM + E  DD K+    KSPWKTP     K  DA VMG  SWP L   Q+         
Sbjct: 1   MVMAENEAGDDQKEV---KSPWKTPVIDGEKAADASVMGTQSWPDLGGTQQ--------- 60

Query: 61  AKSSDSGEVS-DGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNG 120
             ++D+ EV+ DG A   S   GA G   QKS  S N++ SHK+  + HQK GSKRNPN 
Sbjct: 61  --TTDNPEVAADGSAPAPSVEQGAAG--QQKSNGSGNTNASHKHSSARHQKSGSKRNPNA 120

Query: 121 APHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQP--RPVAGVEVHMIKPGNETSVQA 180
            P   VPLPY+QPP+PP+F  ++ PPH+AV GYAYQP   P  G+E  ++  G+ET++QA
Sbjct: 121 TPRFPVPLPYYQPPIPPVFHAMVPPPHIAVSGYAYQPVPGPFPGIESQLVNSGSETTMQA 180

Query: 181 FVPP---------VEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMS 240
           F PP         V+PPPRGDP+ Y     NRRPNMQE G H N GW+HQR FNPR+ + 
Sbjct: 181 FGPPLQGIDPGRNVQPPPRGDPNAYPANFSNRRPNMQEPGGHLNPGWNHQRAFNPRETIP 240

Query: 241 MQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRP---QFIPHPINP 300
           MQ G GPRPF+RPPFF PAPGFMVGPSFPG   + Y+P+PPP +I  P   +F+P+PINP
Sbjct: 241 MQQGVGPRPFVRPPFFGPAPGFMVGPSFPG--AVCYMPIPPPGSIRGPHPPRFVPYPINP 300

Query: 301 RASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMS 360
             +M PP+   LR NI+KQIEYYFSDENL+TDHYLISLMDD GWVPISAIA+FKRVK+MS
Sbjct: 301 GTAMYPPETATLRANIVKQIEYYFSDENLQTDHYLISLMDDQGWVPISAIADFKRVKRMS 360

Query: 361 TDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLV 420
           TDI FILD+L SS+ VEVQGDK+R+RDEWSKW+P  A SK++L+ E        +T   +
Sbjct: 361 TDIKFILDALLSSSTVEVQGDKIRRRDEWSKWIP--ASSKTSLSSEA------PATRGSL 420

Query: 421 DENASDGSRVLASNDNIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTV---PPQGI 480
           +  + +G+    ++            R      D P + N D  +    G V     + +
Sbjct: 421 EHVSPEGNAAEVTH------------RNNCKHADVPVLLN-DADQSQGVGPVRFTDHRSV 480

Query: 481 KISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDV 540
           +ISS+V   +V DLS+ F+ TFMLDEELE+EQK +K  +L +  R+D +DDE+ VNDQDV
Sbjct: 481 EISSDVTVQNVADLSNDFAHTFMLDEELELEQKPLK--NLLALNRMDYEDDEMVVNDQDV 540

Query: 541 QRLIIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSE 600
            RL+IVTQN      S +G K+SKSIS ELA+ INDGLYFYEQ L+ KR +R+K+    E
Sbjct: 541 HRLVIVTQNSGTGDGSKAGAKDSKSISSELAAVINDGLYFYEQELKTKRFSRRKNNSIYE 600

Query: 601 NREGTSRLSSS---ATGSARSKPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRF 660
           N++G  R   S   A G +  K  EN AG  GL+E G AS R+KQ K F KQQS HKQRF
Sbjct: 601 NKDGYPRSPRSPRGALGVSNLKTGENVAGSSGLEESGGASSRRKQNKGFAKQQSFHKQRF 657

Query: 661 FSSNFRNHGTSRNSLGIVAESPPSNSVGFFFGSTPPDS 678
           FSSN +NHGTSRNS+ I++ESPPSNSVG+FFGSTPPDS
Sbjct: 661 FSSNLKNHGTSRNSIAIISESPPSNSVGYFFGSTPPDS 657

[Close]

BLAST of Cucsa.152910.1 vs. TrEMBL
Match: A0A061H079_THECC (Lupus la ribonucleoprotein, putative isoform 2 OS=Theobroma cacao GN=TCM_042031 PE=4 SV=1)

HSP 1 Score: 687.6 bits (1773), Expect = 1.6e-194
Identity = 371/698 (53.15%), Postives = 463/698 (66.33%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVM + E  DD K+    KSPWKTP     K  DA VMG  SWP L   Q+         
Sbjct: 1   MVMAENEAGDDQKEV---KSPWKTPVIDGEKAADASVMGTQSWPDLGGTQQ--------- 60

Query: 61  AKSSDSGEVS-DGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNG 120
             ++D+ EV+ DG A   S   GA G   QKS  S N++ SHK+  + HQK GSKRNPN 
Sbjct: 61  --TTDNPEVAADGSAPAPSVEQGAAG--QQKSNGSGNTNASHKHSSARHQKSGSKRNPNA 120

Query: 121 APHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQP--RPVAGVEVHMIKPGNETSVQA 180
            P   VPLPY+QPP+PP+F  ++ PPH+AV GYAYQP   P  G+E  ++  G+ET++QA
Sbjct: 121 TPRFPVPLPYYQPPIPPVFHAMVPPPHIAVSGYAYQPVPGPFPGIESQLVNSGSETTMQA 180

Query: 181 FVPP---------VEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMS 240
           F PP         V+PPPRGDP+ Y     NRRPNMQE G H N GW+HQR FNPR+ + 
Sbjct: 181 FGPPLQGIDPGRNVQPPPRGDPNAYPANFSNRRPNMQEPGGHLNPGWNHQRAFNPRETIP 240

Query: 241 MQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRP---QFIPHPINP 300
           MQ G GPRPF+RPPFF PAPGFMVGPSFPG   + Y+P+PPP +I  P   +F+P+PINP
Sbjct: 241 MQQGVGPRPFVRPPFFGPAPGFMVGPSFPG--AVCYMPIPPPGSIRGPHPPRFVPYPINP 300

Query: 301 RASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMS 360
             +M PP+   LR NI+KQIEYYFSDENL+TDHYLISLMDD GWVPISAIA+FKRVK+MS
Sbjct: 301 GTAMYPPETATLRANIVKQIEYYFSDENLQTDHYLISLMDDQGWVPISAIADFKRVKRMS 360

Query: 361 TDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLV 420
           TDI FILD+L SS+ VEVQGDK+R+RDEWSKW+P  A SK++L+ E        +T   +
Sbjct: 361 TDIKFILDALLSSSTVEVQGDKIRRRDEWSKWIP--ASSKTSLSSEA------PATRGSL 420

Query: 421 DENASDGSRVLASNDNIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTV---PPQGI 480
           +  + +G+    ++            R      D P + N D  +    G V     + +
Sbjct: 421 EHVSPEGNAAEVTH------------RNNCKHADVPVLLN-DADQSQGVGPVRFTDHRSV 480

Query: 481 KISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDV 540
           +ISS+V   +V DLS+ F+ TFMLDEELE+EQK +K  +L +  R+D +DDE+ VNDQDV
Sbjct: 481 EISSDVTVQNVADLSNDFAHTFMLDEELELEQKPLK--NLLALNRMDYEDDEMVVNDQDV 540

Query: 541 QRLIIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSE 600
            RL+IVTQN      S +G K+SKSIS ELA+ INDGLYFYEQ L+ KR +R+K+    E
Sbjct: 541 HRLVIVTQNSGTGDGSKAGAKDSKSISSELAAVINDGLYFYEQELKTKRFSRRKNNSIYE 600

Query: 601 NREGTSRLSSS---ATGSARSKPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRF 660
           N++G  R   S   A G +  K  EN AG  GL+E G AS R+KQ K F KQQS HKQRF
Sbjct: 601 NKDGYPRSPRSPRGALGVSNLKTGENVAGSSGLEESGGASSRRKQNKGFAKQQSFHKQRF 657

Query: 661 FSSNFRNHGTSRNSLGIVAESPPSNSVGFFFGSTPPDS 678
           FSSN +NHGTSRNS+ I++ESPPSNSVG+FFGSTPPDS
Sbjct: 661 FSSNLKNHGTSRNSIAIISESPPSNSVGYFFGSTPPDS 657

[Close]

BLAST of Cucsa.152910.1 vs. TrEMBL
Match: A0A061GXW9_THECC (Lupus la ribonucleoprotein, putative isoform 4 OS=Theobroma cacao GN=TCM_042031 PE=4 SV=1)

HSP 1 Score: 686.8 bits (1771), Expect = 2.7e-194
Identity = 375/711 (52.74%), Postives = 470/711 (66.10%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVM + E  DD K+    KSPWKTP     K  DA VMG  SWP L   Q+         
Sbjct: 1   MVMAENEAGDDQKEV---KSPWKTPVIDGEKAADASVMGTQSWPDLGGTQQ--------- 60

Query: 61  AKSSDSGEVS-DGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNG 120
             ++D+ EV+ DG A   S   GA G   QKS  S N++ SHK+  + HQK GSKRNPN 
Sbjct: 61  --TTDNPEVAADGSAPAPSVEQGAAG--QQKSNGSGNTNASHKHSSARHQKSGSKRNPNA 120

Query: 121 APHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQP--RPVAGVEVHMIKPGNETSVQA 180
            P   VPLPY+QPP+PP+F  ++ PPH+AV GYAYQP   P  G+E  ++  G+ET++QA
Sbjct: 121 TPRFPVPLPYYQPPIPPVFHAMVPPPHIAVSGYAYQPVPGPFPGIESQLVNSGSETTMQA 180

Query: 181 FVPP---------VEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMS 240
           F PP         V+PPPRGDP+ Y     NRRPNMQE G H N GW+HQR FNPR+ + 
Sbjct: 181 FGPPLQGIDPGRNVQPPPRGDPNAYPANFSNRRPNMQEPGGHLNPGWNHQRAFNPRETIP 240

Query: 241 MQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRP---QFIPHPINP 300
           MQ G GPRPF+RPPFF PAPGFMVGPSFPG   + Y+P+PPP +I  P   +F+P+PINP
Sbjct: 241 MQQGVGPRPFVRPPFFGPAPGFMVGPSFPG--AVCYMPIPPPGSIRGPHPPRFVPYPINP 300

Query: 301 RASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMS 360
             +M PP+   LR NI+KQIEYYFSDENL+TDHYLISLMDD GWVPISAIA+FKRVK+MS
Sbjct: 301 GTAMYPPETATLRANIVKQIEYYFSDENLQTDHYLISLMDDQGWVPISAIADFKRVKRMS 360

Query: 361 TDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLV 420
           TDI FILD+L SS+ VEVQGDK+R+RDEWSKW+P  A SK++L+ E  +     +  SL 
Sbjct: 361 TDIKFILDALLSSSTVEVQGDKIRRRDEWSKWIP--ASSKTSLSSEAPA-----TRGSLE 420

Query: 421 DENASDGSRVLASNDNIKSS----LLQGCSREQFS------SRDSPEVANLDIVEEHSSG 480
             +    +  +   +N K +    LL G  ++ FS      +R       + + +   S 
Sbjct: 421 HVSPEGNAAEVTHRNNCKHADVPVLLNG-EKQSFSGGNGDLNRKLLADFRIKLSDADQSQ 480

Query: 481 TVPP------QGIKISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRID 540
            V P      + ++ISS+V   +V DLS+ F+ TFMLDEELE+EQK +K  +L +  R+D
Sbjct: 481 GVGPVRFTDHRSVEISSDVTVQNVADLSNDFAHTFMLDEELELEQKPLK--NLLALNRMD 540

Query: 541 EDDDEIAVNDQDVQRLIIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVLEK 600
            +DDE+ VNDQDV RL+IVTQN      S +G K+SKSIS ELA+ INDGLYFYEQ L+ 
Sbjct: 541 YEDDEMVVNDQDVHRLVIVTQNSGTGDGSKAGAKDSKSISSELAAVINDGLYFYEQELKT 600

Query: 601 KRSNRKKSKCNSENREGTSRLSSS---ATGSARSKPSENSAGYCGLDEIGNASPRKKQTK 660
           KR +R+K+    EN++G  R   S   A G +  K  EN AG  GL+E G AS R+KQ K
Sbjct: 601 KRFSRRKNNSIYENKDGYPRSPRSPRGALGVSNLKTGENVAGSSGLEESGGASSRRKQNK 660

Query: 661 TFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAESPPSNSVGFFFGSTPPDS 678
            F KQQS HKQRFFSSN +NHGTSRNS+ I++ESPPSNSVG+FFGSTPPDS
Sbjct: 661 GFAKQQSFHKQRFFSSNLKNHGTSRNSIAIISESPPSNSVGYFFGSTPPDS 683

[Close]

BLAST of Cucsa.152910.1 vs. TAIR10
Match: AT5G21160.3 (AT5G21160.3 LA RNA-binding protein)

HSP 1 Score: 483.4 bits (1243), Expect = 2.3e-136
Identity = 293/692 (42.34%), Postives = 400/692 (57.80%), Query Frame = 1


Query: 2   VMVDTE--VTDDNKDTN-----GRKSPWKTPAAVDAKDTDAPVMGADSWPALADA-QRPK 61
           +M +TE  V DD +        G KSPWKT  +   +  DAPVMGA SWPALADA Q+P+
Sbjct: 1   MMAETEGSVADDRELITREGGIGTKSPWKTTTS-PVETIDAPVMGAHSWPALADAAQQPR 60

Query: 62  SIDATTSAKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGS 121
             +    A +  S  +   +  + +P+   Q     KS     ++  HKN    H KPG 
Sbjct: 61  PKNPPAPAPAPPSKNIPTSIP-IPTPAVTGQA----KSKGGGKANPGHKNPSGRHSKPGP 120

Query: 122 KRNPNGAP---HVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMI-KP 181
           + N NG P   ++   +PYH PP PP+ P     PH A P + Y P P   V V  + + 
Sbjct: 121 RSNQNGPPPPPYLVHAVPYHPPPFPPMVPL----PHAAGPDFPYAPYPPYPVPVPPVTES 180

Query: 182 GNETSVQAF-VPPVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMS 241
           GNE  VQA  +PPV P P+GDP          +P            W HQRGF+PR+   
Sbjct: 181 GNEKQVQASPLPPVLPAPQGDPG---------KP------------WPHQRGFDPRN--- 240

Query: 242 MQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRP---QFIPHPINP 301
           M  GAGPR F RPPF  PAPGF+VGP     GP+YY+P PPP AI  P   +F P+P+N 
Sbjct: 241 MPQGAGPRNFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVNQ 300

Query: 302 RASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMS 361
              +L P+ L LR  ++KQ+EYYFSDENL+ DHYLISLMD+ GWVP   IA FKRVK M+
Sbjct: 301 GPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMT 360

Query: 362 TDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLV 421
            D+ FI+ +L  S +VEVQGD++RKRD+WS W+P S   K + + ET            +
Sbjct: 361 MDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWIPAS---KKSTSAET------------I 420

Query: 422 DENASDGSRVLASNDNIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKIS 481
            +   D  + + S DN  +   +G S+   S   S E A       + SG +       S
Sbjct: 421 GDGDKDSPKSITSGDNFGNPS-KGSSKPTVSDFSS-EGAQSSRTNNYKSGNLK------S 480

Query: 482 SNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRL 541
           S     +V+DLS+ FS+TF+LDEEL++E ++ +K  L+ +  I+ +DD++AV+DQD+Q+L
Sbjct: 481 SADEKRNVEDLSNDFSNTFLLDEELDLEHRSPRKSGLSMSKSIEYEDDDMAVDDQDIQKL 540

Query: 542 IIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENRE 601
           +IVTQN      +  GG E+K+I KELASTINDGLY++EQ L+KKRS R+K+  + + ++
Sbjct: 541 VIVTQNSGKSDGAGIGGTEAKNIPKELASTINDGLYYFEQELKKKRSGRRKNNSHLDTKD 600

Query: 602 GTSRLSSSATGSARSKPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFR 661
           G  +          +K  ENSA   G +E G  + R+KQ K   K  ++H +RFFSSN R
Sbjct: 601 GKIKSGE----GLNTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTAHARRFFSSNIR 624

Query: 662 NHGTSRNSLGIVAESPPSNSVGFFFGSTPPDS 678
           N+G        ++ESPPS+S+GFFFGSTPPDS
Sbjct: 661 NNGN-------ISESPPSSSIGFFFGSTPPDS 624

[Close]

BLAST of Cucsa.152910.1 vs. TAIR10
Match: AT4G35890.1 (AT4G35890.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 156.8 bits (395), Expect = 4.9e-38
Identity = 131/458 (28.60%), Postives = 196/458 (42.79%), Query Frame = 1


Query: 13  KDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQR-PKSIDATTSAKS----SDSG 72
           +D  G+K  WK P+  +      PVMGA SWPAL++  + P +  ++ S KS      S 
Sbjct: 107 QDNAGKKPVWKRPS--NGASEVGPVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSS 166

Query: 73  EVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGAPHVSVPL 132
             S  V   Q  ++ +     Q   A+ N + +H   +S  Q+ G+  + NG        
Sbjct: 167 SASSSVPVTQGIANASVPAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGT------- 226

Query: 133 PYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVPPVEPPPR 192
              QP     F  +  P H         P P    + +     N           E P +
Sbjct: 227 -VSQPSAQGSFTEL--PSH--------NPSPRGQNQKNGFASQNHGG-------TENPSQ 286

Query: 193 GDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR--PPFFS 252
            D      G H++    + +  H N  W  QR FN R+  + Q   G   F+R   P   
Sbjct: 287 RDSYRNQNGNHHQSHGGRRNQEHGNQNWTFQRSFNGREG-NAQSQRGTPAFVRHPSPTVQ 346

Query: 253 PAPGFMVGPSFPGHGPM--------YYVPVPPPDAIGR-PQFIPHPINPRASMLPPDMLA 312
           P P FM    FP H P         YY  +P    I   PQF  H  +P           
Sbjct: 347 PIPQFMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPHGPQFFYHYQDP----------P 406

Query: 313 LRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLH 372
           L   + KQI+YYFSDENL TD YL   M++ G+VP+  +A FK+V +++ +I  I+++L 
Sbjct: 407 LHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQ 466

Query: 373 SSANVEVQGDKVRKRDEWSKWV---------PVSADSKSTLNVETSSIPVDESTNSLVDE 432
           +S +VEVQGD +RKRD W  WV         P S D    +     ++ VD+S+   +  
Sbjct: 467 NSPHVEVQGDFIRKRDNWQNWVLRRNPTGSGPQSVDRADAVAKRLGNLSVDQSSADPIGG 522

Query: 433 NASDGSRVLASNDNIKSSLLQGCSREQFSSRDSPEVAN 446
           ++S     L   + +     Q  S    S+ ++P+ AN
Sbjct: 527 SSSQ----LQPTEALSDDQQQSSSTAPVSNHNAPDGAN 522

[Close]

BLAST of Cucsa.152910.1 vs. TAIR10
Match: AT5G66100.1 (AT5G66100.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-21
Identity = 71/216 (32.87%), Postives = 111/216 (51.39%), Query Frame = 1


Query: 186 PRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRD-NMSMQHGAG---PRPFIRP 245
           PRG+      G+H+      E   H N      R ++ RD ++  Q G G   P+  + P
Sbjct: 223 PRGE------GLHHGNRRNYE---HGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGP 282

Query: 246 PFF---------SPAPGFMVGPS-FPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLP 305
           P F         +P  G   GP  +P +    ++P P PD +G     P P+ P   M  
Sbjct: 283 PSFPASSAQYMAAPQLGSYGGPIIYPDYAQHVFMPHPSPDPMGLVG--PFPLQP---MYF 342

Query: 306 PDMLALRTN-IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISF 365
            +  A+  N I+ Q+EYYFS +NL  D +L   M+D GWVP+  IA F+R+ +++ +I  
Sbjct: 343 RNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQT 402

Query: 366 ILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKS 387
           IL++L SS  VE+QG+ +R+R +W K++     S+S
Sbjct: 403 ILEALRSSEVVEIQGETLRRRGDWDKYLLPREPSRS 424

HSP 2 Score: 37.4 bits (85), Expect = 4.3e-02
Identity = 33/115 (28.70%), Postives = 56/115 (48.70%), Query Frame = 1


Query: 14  DTNGRKSP--WKTPAAVDAKDTDAPVMGA-DSWPALADAQRPKSIDATT--SAKSSDSGE 73
           D   +K P  W  P++  + D   PVMGA +SWPAL+ + R  SI + +  ++K    G 
Sbjct: 70  DNADKKPPPVWNMPSSNSSSDV-GPVMGAAESWPALSLSARSSSIKSPSLDASKPFPDGS 129

Query: 74  VSD--GVAALQSPSSGAQGGYAQKSPASRNSSYSH---KNFQSHHQKPGSKRNPN 119
            S      A  + S+ A  G +  + +S NS+ ++   K F+ ++    S  + N
Sbjct: 130 SSSIPPPQATSNTSTNANAGSSVSATSSENSAVNNSQRKPFRRNNNTSSSSTSSN 183

[Close]

BLAST of Cucsa.152910.1 vs. TAIR10
Match: AT5G46250.1 (AT5G46250.1 RNA-binding protein)

HSP 1 Score: 69.7 bits (169), Expect = 7.9e-12
Identity = 51/159 (32.08%), Postives = 83/159 (52.20%), Query Frame = 1


Query: 281 HPINPRASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLM--DDHGWVPISAIAEF 340
           +P+     ++P D   L   II+Q+EYYFSDENL TD +L++ M  +  G+VPIS IA F
Sbjct: 89  NPVETDGVVVPID--ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATF 148

Query: 341 KRVKKMSTDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVD 400
            ++KK++ D + I+ +L  S+ + V  D+  K+ +    +P   D K    V   ++P D
Sbjct: 149 HKMKKLTRDHALIVSALKESSFLVVSADE--KKVKRLSPLPEIRDPK-IFTVLVENLPED 208

Query: 401 ESTNSLVDENASDGS--RVLASNDNIKSSLLQGCSREQF 436
            S  ++ +     GS   V   + N      +G  +E F
Sbjct: 209 HSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENF 242

[Close]

BLAST of Cucsa.152910.1 vs. TAIR10
Match: AT2G43970.1 (AT2G43970.1 RNA-binding protein)

HSP 1 Score: 53.5 bits (127), Expect = 5.8e-07
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 290 LPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLM--DDHGWVPISAIAEFKRVKKMSTD 349
           LP D +     I+ Q+EYYFSD NL T  +L+  +  D  G+VPI  +A FK++K +  +
Sbjct: 189 LPEDSIQ---KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINN 248

Query: 350 ISFILDSLHSSAN--VEVQGDKVRK 371
            S +   L +SA   V   G KVR+
Sbjct: 249 NSQLAAVLQNSAKLFVSEDGKKVRR 270

[Close]

BLAST of Cucsa.152910.1 vs. NCBI nr
Match: gi|449463867|ref|XP_004149652.1| (PREDICTED: la-related protein 1A [Cucumis sativus])

HSP 1 Score: 1384.4 bits (3582), Expect = 0.0e+00
Identity = 678/678 (100.00%), Postives = 678/678 (100.00%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS
Sbjct: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60

Query: 61  AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGA 120
           AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGA
Sbjct: 61  AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGA 120

Query: 121 PHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVP 180
           PHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVP
Sbjct: 121 PHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVP 180

Query: 181 PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR 240
           PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR
Sbjct: 181 PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR 240

Query: 241 PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN 300
           PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN
Sbjct: 241 PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN 300

Query: 301 IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSAN 360
           IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSAN
Sbjct: 301 IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSAN 360

Query: 361 VEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASND 420
           VEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASND
Sbjct: 361 VEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASND 420

Query: 421 NIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQF 480
           NIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQF
Sbjct: 421 NIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQF 480

Query: 481 SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTS 540
           SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTS
Sbjct: 481 SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTS 540

Query: 541 GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS 600
           GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS
Sbjct: 541 GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS 600

Query: 601 KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES 660
           KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES
Sbjct: 601 KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES 660

Query: 661 PPSNSVGFFFGSTPPDST 679
           PPSNSVGFFFGSTPPDST
Sbjct: 661 PPSNSVGFFFGSTPPDST 678

[Close]

BLAST of Cucsa.152910.1 vs. NCBI nr
Match: gi|659097889|ref|XP_008449869.1| (PREDICTED: la-related protein 1A isoform X1 [Cucumis melo])

HSP 1 Score: 1353.2 bits (3501), Expect = 0.0e+00
Identity = 660/678 (97.35%), Postives = 666/678 (98.23%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVMVDTEVTDDNKDTNGRKSPWKTP AVDAKDTDAPVMGADSWPALADAQRPKS+DATTS
Sbjct: 1   MVMVDTEVTDDNKDTNGRKSPWKTPTAVDAKDTDAPVMGADSWPALADAQRPKSLDATTS 60

Query: 61  AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGA 120
           AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRN SYSHKNFQSHHQKPGSKRNPNGA
Sbjct: 61  AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNPSYSHKNFQSHHQKPGSKRNPNGA 120

Query: 121 PHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVP 180
           PHVSVPLPYHQP MPPLFPPILHPPHLAVPGYAYQPRPV GVEVHMIKPGNETSVQAFVP
Sbjct: 121 PHVSVPLPYHQPQMPPLFPPILHPPHLAVPGYAYQPRPVPGVEVHMIKPGNETSVQAFVP 180

Query: 181 PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR 240
           PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDN+SMQHGAGPRPFIR
Sbjct: 181 PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNISMQHGAGPRPFIR 240

Query: 241 PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN 300
           PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN
Sbjct: 241 PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN 300

Query: 301 IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSAN 360
           IIKQIEYYFSDENLKTDHYLISLMDDHGWV ISAIAEFKRVKKMSTDISFILDSLHSSAN
Sbjct: 301 IIKQIEYYFSDENLKTDHYLISLMDDHGWVSISAIAEFKRVKKMSTDISFILDSLHSSAN 360

Query: 361 VEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASND 420
           VEVQGDKVRKRD+WSKWVPVSADSKSTLNVETSS PVDES NS VDENASDGSRVLASND
Sbjct: 361 VEVQGDKVRKRDDWSKWVPVSADSKSTLNVETSSNPVDESNNSFVDENASDGSRVLASND 420

Query: 421 NIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQF 480
           NIKSS+LQGCSREQFSSRDSPEVANLDIVEEHS GT+PPQGIKISSNVG HD DDLSSQF
Sbjct: 421 NIKSSILQGCSREQFSSRDSPEVANLDIVEEHSRGTLPPQGIKISSNVGGHDADDLSSQF 480

Query: 481 SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTS 540
           SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRA EKRST+
Sbjct: 481 SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRATEKRSTN 540

Query: 541 GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS 600
           GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS
Sbjct: 541 GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS 600

Query: 601 KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES 660
           KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES
Sbjct: 601 KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES 660

Query: 661 PPSNSVGFFFGSTPPDST 679
           PPSNSVGFFFGSTPPDST
Sbjct: 661 PPSNSVGFFFGSTPPDST 678

[Close]

BLAST of Cucsa.152910.1 vs. NCBI nr
Match: gi|659097891|ref|XP_008449871.1| (PREDICTED: la-related protein 1A isoform X2 [Cucumis melo])

HSP 1 Score: 1353.2 bits (3501), Expect = 0.0e+00
Identity = 660/678 (97.35%), Postives = 666/678 (98.23%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVMVDTEVTDDNKDTNGRKSPWKTP AVDAKDTDAPVMGADSWPALADAQRPKS+DATTS
Sbjct: 1   MVMVDTEVTDDNKDTNGRKSPWKTPTAVDAKDTDAPVMGADSWPALADAQRPKSLDATTS 60

Query: 61  AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNGA 120
           AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRN SYSHKNFQSHHQKPGSKRNPNGA
Sbjct: 61  AKSSDSGEVSDGVAALQSPSSGAQGGYAQKSPASRNPSYSHKNFQSHHQKPGSKRNPNGA 120

Query: 121 PHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQPRPVAGVEVHMIKPGNETSVQAFVP 180
           PHVSVPLPYHQP MPPLFPPILHPPHLAVPGYAYQPRPV GVEVHMIKPGNETSVQAFVP
Sbjct: 121 PHVSVPLPYHQPQMPPLFPPILHPPHLAVPGYAYQPRPVPGVEVHMIKPGNETSVQAFVP 180

Query: 181 PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMSMQHGAGPRPFIR 240
           PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDN+SMQHGAGPRPFIR
Sbjct: 181 PVEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNISMQHGAGPRPFIR 240

Query: 241 PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN 300
           PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN
Sbjct: 241 PPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRPQFIPHPINPRASMLPPDMLALRTN 300

Query: 301 IIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMSTDISFILDSLHSSAN 360
           IIKQIEYYFSDENLKTDHYLISLMDDHGWV ISAIAEFKRVKKMSTDISFILDSLHSSAN
Sbjct: 301 IIKQIEYYFSDENLKTDHYLISLMDDHGWVSISAIAEFKRVKKMSTDISFILDSLHSSAN 360

Query: 361 VEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLVDENASDGSRVLASND 420
           VEVQGDKVRKRD+WSKWVPVSADSKSTLNVETSS PVDES NS VDENASDGSRVLASND
Sbjct: 361 VEVQGDKVRKRDDWSKWVPVSADSKSTLNVETSSNPVDESNNSFVDENASDGSRVLASND 420

Query: 421 NIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTVPPQGIKISSNVGAHDVDDLSSQF 480
           NIKSS+LQGCSREQFSSRDSPEVANLDIVEEHS GT+PPQGIKISSNVG HD DDLSSQF
Sbjct: 421 NIKSSILQGCSREQFSSRDSPEVANLDIVEEHSRGTLPPQGIKISSNVGGHDADDLSSQF 480

Query: 481 SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTS 540
           SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRA EKRST+
Sbjct: 481 SSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDVQRLIIVTQNRATEKRSTN 540

Query: 541 GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS 600
           GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS
Sbjct: 541 GGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSENREGTSRLSSSATGSARS 600

Query: 601 KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES 660
           KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES
Sbjct: 601 KPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAES 660

Query: 661 PPSNSVGFFFGSTPPDST 679
           PPSNSVGFFFGSTPPDST
Sbjct: 661 PPSNSVGFFFGSTPPDST 678

[Close]

BLAST of Cucsa.152910.1 vs. NCBI nr
Match: gi|590590306|ref|XP_007016696.1| (Lupus la ribonucleoprotein, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 695.7 bits (1794), Expect = 8.3e-197
Identity = 376/714 (52.66%), Postives = 478/714 (66.95%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVM + E  DD K+    KSPWKTP     K  DA VMG  SWP L   Q+         
Sbjct: 1   MVMAENEAGDDQKEV---KSPWKTPVIDGEKAADASVMGTQSWPDLGGTQQ--------- 60

Query: 61  AKSSDSGEVS-DGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNG 120
             ++D+ EV+ DG A   S   GA G   QKS  S N++ SHK+  + HQK GSKRNPN 
Sbjct: 61  --TTDNPEVAADGSAPAPSVEQGAAG--QQKSNGSGNTNASHKHSSARHQKSGSKRNPNA 120

Query: 121 APHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQP--RPVAGVEVHMIKPGNETSVQA 180
            P   VPLPY+QPP+PP+F  ++ PPH+AV GYAYQP   P  G+E  ++  G+ET++QA
Sbjct: 121 TPRFPVPLPYYQPPIPPVFHAMVPPPHIAVSGYAYQPVPGPFPGIESQLVNSGSETTMQA 180

Query: 181 FVPP---------VEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMS 240
           F PP         V+PPPRGDP+ Y     NRRPNMQE G H N GW+HQR FNPR+ + 
Sbjct: 181 FGPPLQGIDPGRNVQPPPRGDPNAYPANFSNRRPNMQEPGGHLNPGWNHQRAFNPRETIP 240

Query: 241 MQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRP---QFIPHPINP 300
           MQ G GPRPF+RPPFF PAPGFMVGPSFPG   + Y+P+PPP +I  P   +F+P+PINP
Sbjct: 241 MQQGVGPRPFVRPPFFGPAPGFMVGPSFPG--AVCYMPIPPPGSIRGPHPPRFVPYPINP 300

Query: 301 RASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMS 360
             +M PP+   LR NI+KQIEYYFSDENL+TDHYLISLMDD GWVPISAIA+FKRVK+MS
Sbjct: 301 GTAMYPPETATLRANIVKQIEYYFSDENLQTDHYLISLMDDQGWVPISAIADFKRVKRMS 360

Query: 361 TDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIP---VDESTN 420
           TDI FILD+L SS+ VEVQGDK+R+RDEWSKW+P  A SK++L+ E  +     V+  T+
Sbjct: 361 TDIKFILDALLSSSTVEVQGDKIRRRDEWSKWIP--ASSKTSLSSEAPATRYEFVENVTD 420

Query: 421 SLVDENASDGSRVLASNDNIKSSLLQGC--------SREQFSSRDSPEVANLDIV---EE 480
           S  + N ++ +    S +N+K  L  G         +  + + R++ + A++ ++    +
Sbjct: 421 SCGNGNTNEDNSRDTSEENLKFPLDSGSLEHVSPEGNAAEVTHRNNCKHADVPVLLNDAD 480

Query: 481 HSSGTVP-----PQGIKISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNG 540
            S G  P      + ++ISS+V   +V DLS+ F+ TFMLDEELE+EQK +K  +L +  
Sbjct: 481 QSQGVGPVRFTDHRSVEISSDVTVQNVADLSNDFAHTFMLDEELELEQKPLK--NLLALN 540

Query: 541 RIDEDDDEIAVNDQDVQRLIIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQV 600
           R+D +DDE+ VNDQDV RL+IVTQN      S +G K+SKSIS ELA+ INDGLYFYEQ 
Sbjct: 541 RMDYEDDEMVVNDQDVHRLVIVTQNSGTGDGSKAGAKDSKSISSELAAVINDGLYFYEQE 600

Query: 601 LEKKRSNRKKSKCNSENREGTSRLSSS---ATGSARSKPSENSAGYCGLDEIGNASPRKK 660
           L+ KR +R+K+    EN++G  R   S   A G +  K  EN AG  GL+E G AS R+K
Sbjct: 601 LKTKRFSRRKNNSIYENKDGYPRSPRSPRGALGVSNLKTGENVAGSSGLEESGGASSRRK 660

Query: 661 QTKTFPKQQSSHKQRFFSSNFRNHGTSRNSLGIVAESPPSNSVGFFFGSTPPDS 678
           Q K F KQQS HKQRFFSSN +NHGTSRNS+ I++ESPPSNSVG+FFGSTPPDS
Sbjct: 661 QNKGFAKQQSFHKQRFFSSNLKNHGTSRNSIAIISESPPSNSVGYFFGSTPPDS 692

[Close]

BLAST of Cucsa.152910.1 vs. NCBI nr
Match: gi|590590303|ref|XP_007016695.1| (Lupus la ribonucleoprotein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 687.6 bits (1773), Expect = 2.3e-194
Identity = 371/698 (53.15%), Postives = 463/698 (66.33%), Query Frame = 1


Query: 1   MVMVDTEVTDDNKDTNGRKSPWKTPAAVDAKDTDAPVMGADSWPALADAQRPKSIDATTS 60
           MVM + E  DD K+    KSPWKTP     K  DA VMG  SWP L   Q+         
Sbjct: 1   MVMAENEAGDDQKEV---KSPWKTPVIDGEKAADASVMGTQSWPDLGGTQQ--------- 60

Query: 61  AKSSDSGEVS-DGVAALQSPSSGAQGGYAQKSPASRNSSYSHKNFQSHHQKPGSKRNPNG 120
             ++D+ EV+ DG A   S   GA G   QKS  S N++ SHK+  + HQK GSKRNPN 
Sbjct: 61  --TTDNPEVAADGSAPAPSVEQGAAG--QQKSNGSGNTNASHKHSSARHQKSGSKRNPNA 120

Query: 121 APHVSVPLPYHQPPMPPLFPPILHPPHLAVPGYAYQP--RPVAGVEVHMIKPGNETSVQA 180
            P   VPLPY+QPP+PP+F  ++ PPH+AV GYAYQP   P  G+E  ++  G+ET++QA
Sbjct: 121 TPRFPVPLPYYQPPIPPVFHAMVPPPHIAVSGYAYQPVPGPFPGIESQLVNSGSETTMQA 180

Query: 181 FVPP---------VEPPPRGDPSGYVVGIHNRRPNMQESGVHWNHGWHHQRGFNPRDNMS 240
           F PP         V+PPPRGDP+ Y     NRRPNMQE G H N GW+HQR FNPR+ + 
Sbjct: 181 FGPPLQGIDPGRNVQPPPRGDPNAYPANFSNRRPNMQEPGGHLNPGWNHQRAFNPRETIP 240

Query: 241 MQHGAGPRPFIRPPFFSPAPGFMVGPSFPGHGPMYYVPVPPPDAIGRP---QFIPHPINP 300
           MQ G GPRPF+RPPFF PAPGFMVGPSFPG   + Y+P+PPP +I  P   +F+P+PINP
Sbjct: 241 MQQGVGPRPFVRPPFFGPAPGFMVGPSFPG--AVCYMPIPPPGSIRGPHPPRFVPYPINP 300

Query: 301 RASMLPPDMLALRTNIIKQIEYYFSDENLKTDHYLISLMDDHGWVPISAIAEFKRVKKMS 360
             +M PP+   LR NI+KQIEYYFSDENL+TDHYLISLMDD GWVPISAIA+FKRVK+MS
Sbjct: 301 GTAMYPPETATLRANIVKQIEYYFSDENLQTDHYLISLMDDQGWVPISAIADFKRVKRMS 360

Query: 361 TDISFILDSLHSSANVEVQGDKVRKRDEWSKWVPVSADSKSTLNVETSSIPVDESTNSLV 420
           TDI FILD+L SS+ VEVQGDK+R+RDEWSKW+P  A SK++L+ E        +T   +
Sbjct: 361 TDIKFILDALLSSSTVEVQGDKIRRRDEWSKWIP--ASSKTSLSSEA------PATRGSL 420

Query: 421 DENASDGSRVLASNDNIKSSLLQGCSREQFSSRDSPEVANLDIVEEHSSGTV---PPQGI 480
           +  + +G+    ++            R      D P + N D  +    G V     + +
Sbjct: 421 EHVSPEGNAAEVTH------------RNNCKHADVPVLLN-DADQSQGVGPVRFTDHRSV 480

Query: 481 KISSNVGAHDVDDLSSQFSSTFMLDEELEIEQKAIKKDDLTSNGRIDEDDDEIAVNDQDV 540
           +ISS+V   +V DLS+ F+ TFMLDEELE+EQK +K  +L +  R+D +DDE+ VNDQDV
Sbjct: 481 EISSDVTVQNVADLSNDFAHTFMLDEELELEQKPLK--NLLALNRMDYEDDEMVVNDQDV 540

Query: 541 QRLIIVTQNRAIEKRSTSGGKESKSISKELASTINDGLYFYEQVLEKKRSNRKKSKCNSE 600
            RL+IVTQN      S +G K+SKSIS ELA+ INDGLYFYEQ L+ KR +R+K+    E
Sbjct: 541 HRLVIVTQNSGTGDGSKAGAKDSKSISSELAAVINDGLYFYEQELKTKRFSRRKNNSIYE 600

Query: 601 NREGTSRLSSS---ATGSARSKPSENSAGYCGLDEIGNASPRKKQTKTFPKQQSSHKQRF 660
           N++G  R   S   A G +  K  EN AG  GL+E G AS R+KQ K F KQQS HKQRF
Sbjct: 601 NKDGYPRSPRSPRGALGVSNLKTGENVAGSSGLEESGGASSRRKQNKGFAKQQSFHKQRF 657

Query: 661 FSSNFRNHGTSRNSLGIVAESPPSNSVGFFFGSTPPDS 678
           FSSN +NHGTSRNS+ I++ESPPSNSVG+FFGSTPPDS
Sbjct: 661 FSSNLKNHGTSRNSIAIISESPPSNSVGYFFGSTPPDS 657

The following BLAST results are available for this feature:

BLAST of Cucsa.152910.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP1A_ARATH	4.0e-135	42.34	La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1	[more]
LRP1C_ARATH	8.7e-37	28.60	La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1	[more]
LAR1B_HUMAN	4.8e-27	30.32	La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2	[more]
LARP1_MOUSE	1.0e-24	30.41	La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=3	[more]
LARP1_HUMAN	1.1e-23	30.03	La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2	[more]

BLAST of Cucsa.152910.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWS8_CUCSA	0.0e+00	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269710 PE=4 SV=1	[more]
A0A061GWU6_THECC	5.8e-197	52.66	Lupus la ribonucleoprotein, putative isoform 3 OS=Theobroma cacao GN=TCM_042031 ...	[more]
A0A061GY17_THECC	1.6e-194	53.15	Lupus la ribonucleoprotein, putative isoform 1 OS=Theobroma cacao GN=TCM_042031 ...	[more]
A0A061H079_THECC	1.6e-194	53.15	Lupus la ribonucleoprotein, putative isoform 2 OS=Theobroma cacao GN=TCM_042031 ...	[more]
A0A061GXW9_THECC	2.7e-194	52.74	Lupus la ribonucleoprotein, putative isoform 4 OS=Theobroma cacao GN=TCM_042031 ...	[more]

BLAST of Cucsa.152910.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21160.3	2.3e-136	42.34	LA RNA-binding protein	[more]
AT4G35890.1	4.9e-38	28.60	winged-helix DNA-binding transcription factor family protein	[more]
AT5G66100.1	1.4e-21	32.87	winged-helix DNA-binding transcription factor family protein	[more]
AT5G46250.1	7.9e-12	32.08	RNA-binding protein	[more]
AT2G43970.1	5.8e-07	38.82	RNA-binding protein	[more]

BLAST of Cucsa.152910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463867\|ref\|XP_004149652.1\|	0.0e+00	100.00	PREDICTED: la-related protein 1A [Cucumis sativus]	[more]
gi\|659097889\|ref\|XP_008449869.1\|	0.0e+00	97.35	PREDICTED: la-related protein 1A isoform X1 [Cucumis melo]	[more]
gi\|659097891\|ref\|XP_008449871.1\|	0.0e+00	97.35	PREDICTED: la-related protein 1A isoform X2 [Cucumis melo]	[more]
gi\|590590306\|ref\|XP_007016696.1\|	8.3e-197	52.66	Lupus la ribonucleoprotein, putative isoform 3 [Theobroma cacao]	[more]
gi\|590590303\|ref\|XP_007016695.1\|	2.3e-194	53.15	Lupus la ribonucleoprotein, putative isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR011991	Winged helix-turn-helix DNA-binding domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.152910	Cucsa.152910	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.152910.1	Cucsa.152910.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.152910.1.five_prime_UTR.1	Cucsa.152910.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.152910.1.CDS.1	Cucsa.152910.1.CDS.1	CDS
Cucsa.152910.1.CDS.2	Cucsa.152910.1.CDS.2	CDS
Cucsa.152910.1.CDS.3	Cucsa.152910.1.CDS.3	CDS
Cucsa.152910.1.CDS.4	Cucsa.152910.1.CDS.4	CDS
Cucsa.152910.1.CDS.5	Cucsa.152910.1.CDS.5	CDS
Cucsa.152910.1.CDS.6	Cucsa.152910.1.CDS.6	CDS
Cucsa.152910.1.CDS.7	Cucsa.152910.1.CDS.7	CDS
Cucsa.152910.1.CDS.8	Cucsa.152910.1.CDS.8	CDS
Cucsa.152910.1.CDS.9	Cucsa.152910.1.CDS.9	CDS
Cucsa.152910.1.CDS.10	Cucsa.152910.1.CDS.10	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.152910.1.three_prime_UTR.1	Cucsa.152910.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	RNA-binding protein Lupus La	PFAM	PF05383	La	coord: 301..355 score: 4.1
IPR006630	RNA-binding protein Lupus La	SMART	SM00715	la	coord: 295..373 score: 3.1
IPR006630	RNA-binding protein Lupus La	PROFILE	PS50961	HTH_LA	coord: 291..380 score: 25
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 296..374 score: 7.5
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 289..380 score: 2.81
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 529..677 score: 6.1E-185coord: 2..402 score: 6.1E-185coord: 435..501 score: 6.1E
None	No IPR available	PANTHER	PTHR22792:SF68	LA-RELATED PROTEIN 1A	coord: 529..677 score: 6.1E-185coord: 2..402 score: 6.1E-185coord: 435..501 score: 6.1E