Cucsa.119670.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.119670.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold00998 : 1603704 .. 1604432 (+)
Sequence length	609

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCGTTCGCCACACCAAACCCACCACCACATTGGCTGCTTATCTTGATCTGGAGGACCAACAAACCCAATCTTGCCCCACTTGTCGCTGCTCCACAAATTCCGCCATTTCTCTCCGGCCAAAGCCAGCTCTCTCTCGGACTGCGAGAGCCATCGTCTTTGGTACGATTCTGGTCAGTACTGAATTTTGGTGTCCTTTATTTTTTTTtAACTTTATTCCTTTTTATAAATATTTTGTTCTGATTTAGATCAAAAGAGTTCGTGAGAGAAAAATCCACCGTCAACCGAAATCTGACGGTCGGAAGCGAAGTTTGTCGCTGGATTCTGTAAGGGTTCCGGTAAAGGAAAaCAGGGAATTGGTGAAAAAAGAATTGGACGGAATTAATCAAGAAAACAGAGAGATTTCTCTTTCATCTGGTTCAATACAATCTTTTTCAATTTCAATATCAGAACCCAAAATTTCGAATAAGAAAACAGGCTGTGGGATTGAAGCCATTGGCGTGAAGCAGAGAGAGGTGGAGTGGAGCAGGAGAAGTTGCTATGCATTCAATTCTAGCGTTAGATTGCTTATGGTGAGTCTTGGAGTGACAGTGATGCAAGGCAGAGTACTCGGAATTTTGATCACATCAATTTCGGTCTACTTTTTTGCTTGGATGCAGATGGAGGATTGTtGGTTGAAGAAGAAGGCAACAAAATGTATGGAAAAACGAGAAAATAGGCATTAA

mRNA sequence

ATGGCAACCGTTCGCCACACCAAACCCACCACCACATTGGCTGCTTATCTTGATCTGGAGGACCAACAAACCCAATCTTGCCCCACTTGTCGCTGCTCCACAAATTCCGCCATTTCTCTCCGGCCAAAGCCAGCTCTCTCTCGGACTGCGAGAGCCATCGTCTTTGGTACGATTCTGATCAAAAGAGTTCGTGAGAGAAAAATCCACCGTCAACCGAAATCTGACGGTCGGAAGCGAAGTTTGTCGCTGGATTCTGTAAGGGTTCCGGTAAAGGAAAACAGGGAATTGGTGAAAAAAGAATTGGACGGAATTAATCAAGAAAACAGAGAGATTTCTCTTTCATCTGGTTCAATACAATCTTTTTCAATTTCAATATCAGAACCCAAAATTTCGAATAAGAAAACAGGCTGTGGGATTGAAGCCATTGGCGTGAAGCAGAGAGAGGTGGAGTGGAGCAGGAGAAGTTGCTATGCATTCAATTCTAGCGTTAGATTGCTTATGGTGAGTCTTGGAGTGACAGTGATGCAAGGCAGAGTACTCGGAATTTTGATCACATCAATTTCGGTCTACTTTTTTGCTTGGATGCAGATGGAGGATTGTTGGCATTAA

Coding sequence (CDS)

ATGGCAACCGTTCGCCACACCAAACCCACCACCACATTGGCTGCTTATCTTGATCTGGAGGACCAACAAACCCAATCTTGCCCCACTTGTCGCTGCTCCACAAATTCCGCCATTTCTCTCCGGCCAAAGCCAGCTCTCTCTCGGACTGCGAGAGCCATCGTCTTTGGTACGATTCTGATCAAAAGAGTTCGTGAGAGAAAAATCCACCGTCAACCGAAATCTGACGGTCGGAAGCGAAGTTTGTCGCTGGATTCTGTAAGGGTTCCGGTAAAGGAAAaCAGGGAATTGGTGAAAAAAGAATTGGACGGAATTAATCAAGAAAACAGAGAGATTTCTCTTTCATCTGGTTCAATACAATCTTTTTCAATTTCAATATCAGAACCCAAAATTTCGAATAAGAAAACAGGCTGTGGGATTGAAGCCATTGGCGTGAAGCAGAGAGAGGTGGAGTGGAGCAGGAGAAGTTGCTATGCATTCAATTCTAGCGTTAGATTGCTTATGGTGAGTCTTGGAGTGACAGTGATGCAAGGCAGAGTACTCGGAATTTTGATCACATCAATTTCGGTCTACTTTTTTGCTTGGATGCAGATGGAGGATTGTtGGCATTAA

Protein sequence

MATVRHTKPTTTLAAYLDLEDQQTQSCPTCRCSTNSAISLRPKPALSRTARAIVFGTILIKRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENREISLSSGSIQSFSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVLGILITSISVYFFAWMQMEDCWH*

Homology

[Close]

BLAST of Cucsa.119670.1 vs. TrEMBL
Match: A0A0A0KE38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121450 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.7e-107
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1


Query: 1   MATVRHTKPTTTLAAYLDLEDQQTQSCPTCRCSTNSAISLRPKPALSRTARAIVFGTILI 60
           MATVRHTKPTTTLAAYLDLEDQQTQSCPTCRCSTNSAISLRPKPALSRTARAIVFGTILI
Sbjct: 1   MATVRHTKPTTTLAAYLDLEDQQTQSCPTCRCSTNSAISLRPKPALSRTARAIVFGTILI 60

Query: 61  KRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENREISLSSGSIQS 120
           KRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENREISLSSGSIQS
Sbjct: 61  KRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENREISLSSGSIQS 120

Query: 121 FSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVL 180
           FSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVL
Sbjct: 121 FSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVL 180

Query: 181 GILITSISVYFFAWMQMEDCW 202
           GILITSISVYFFAWMQMEDCW
Sbjct: 181 GILITSISVYFFAWMQMEDCW 201

[Close]

BLAST of Cucsa.119670.1 vs. TrEMBL
Match: A0A061E4J7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007861 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.7e-08
Identity = 62/196 (31.63%), Postives = 94/196 (47.96%), Query Frame = 1


Query: 18  DLEDQQTQSCPTCRCSTNSAISLRP-KPALSRTARAIVFGTILIKRVRERKIHRQPKSDG 77
           D++   T+S  +   + NS + LRP K   S+  +A+VF  IL+KRV +RK+  Q  S  
Sbjct: 48  DIKPSMTKS--SVSDTENSILILRPGKKTFSQVIKAVVFEIILVKRVLDRKVIHQ-GSYS 107

Query: 78  RKRSLSLDS------VRVPVKENRELVKKEL-DGINQENREISLSSGSIQSFSISIS--- 137
            K S  L S        +    N+ L  KE+ D I++ N   S+SS S  S S S +   
Sbjct: 108 SKHSFPLSSRDKLLDASLGKSVNKVLAGKEIRDTISKSNSVSSVSSCSSSSSSSSPNSTQ 167

Query: 138 ---EPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVLGIL 197
                K+ NK T        +  +  +  R S  + NS++ LL+ SL VT+  G++  I 
Sbjct: 168 NQKRQKLQNKNTYSNHRESEMNPKHEQIDRGS--SSNSAIFLLLASLAVTIFWGKICAIF 227

Query: 198 ITSISVYFFAWMQMED 200
            TS+ +YF    Q  D
Sbjct: 228 FTSMWLYFLPHQQPAD 238

[Close]

BLAST of Cucsa.119670.1 vs. NCBI nr
Match: gi|449444407|ref|XP_004139966.1| (PREDICTED: uncharacterized protein LOC101210838 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1


Query: 1   MATVRHTKPTTTLAAYLDLEDQQTQSCPTCRCSTNSAISLRPKPALSRTARAIVFGTILI 60
           MATVRHTKPTTTLAAYLDLEDQQTQSCPTCRCSTNSAISLRPKPALSRTARAIVFGTILI
Sbjct: 1   MATVRHTKPTTTLAAYLDLEDQQTQSCPTCRCSTNSAISLRPKPALSRTARAIVFGTILI 60

Query: 61  KRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENREISLSSGSIQS 120
           KRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENREISLSSGSIQS
Sbjct: 61  KRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENREISLSSGSIQS 120

Query: 121 FSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVL 180
           FSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVL
Sbjct: 121 FSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVL 180

Query: 181 GILITSISVYFFAWMQMEDCW 202
           GILITSISVYFFAWMQMEDCW
Sbjct: 181 GILITSISVYFFAWMQMEDCW 201

[Close]

BLAST of Cucsa.119670.1 vs. NCBI nr
Match: gi|659094757|ref|XP_008448227.1| (PREDICTED: uncharacterized protein LOC103490482 [Cucumis melo])

HSP 1 Score: 361.3 bits (926), Expect = 1.1e-96
Identity = 186/201 (92.54%), Postives = 188/201 (93.53%), Query Frame = 1


Query: 1   MATVRHTKPTTTLAAYLDLEDQQTQSCPTCRCSTNSAISLRPKPALSRTARAIVFGTILI 60
           M TVRHTKP TTLAA+LDLEDQQTQSCP CRCS NSAISL PKPALSRTARAIVFGTILI
Sbjct: 1   MGTVRHTKPPTTLAAFLDLEDQQTQSCPNCRCSRNSAISLPPKPALSRTARAIVFGTILI 60

Query: 61  KRVRERKIHRQPKSDGRKRSLSLDSVRVPVKENRELVKKELDGINQENREISLSSGSIQS 120
           KRVRERK HRQPK DGRKRSL LDSVRVPVKENRE VK+ELDGI QENREI LSSGSIQS
Sbjct: 61  KRVRERKTHRQPKYDGRKRSLLLDSVRVPVKENRESVKRELDGIYQENREIPLSSGSIQS 120

Query: 121 FSISISEPKISNKKTGCGIEAIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVL 180
           FSISISEPKISNKKTGCG EAIGVKQREVE SRRSCYAFNSSVRLLMVSLGVTVMQGRVL
Sbjct: 121 FSISISEPKISNKKTGCGNEAIGVKQREVERSRRSCYAFNSSVRLLMVSLGVTVMQGRVL 180

Query: 181 GILITSISVYFFAWMQMEDCW 202
           GILITSISVYFFAWMQMEDCW
Sbjct: 181 GILITSISVYFFAWMQMEDCW 201

[Close]

BLAST of Cucsa.119670.1 vs. NCBI nr
Match: gi|694324381|ref|XP_009353215.1| (PREDICTED: uncharacterized protein LOC103944478 [Pyrus x bretschneideri])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 60/171 (35.09%), Postives = 88/171 (51.46%), Query Frame = 1


Query: 33  STNSAISLRPKPALSRTARAIVFGTILIKRVRERKIHRQPKSDGRKRSLSLDSVRVPVKE 92
           S NS +  RP    S+  +A+VF TIL K+ R+RK+ RQ  S G KR  SL S       
Sbjct: 65  SENSKMPPRPSRTFSKAVKAVVFETILAKKARDRKVCRQD-SFGSKRCFSLRSEASLNLG 124

Query: 93  NRELVKK-----ELDGINQENREISLSSGSIQSFSISISEPK-ISNKKTGCGIEAIGVKQ 152
             E VKK      +  ++  +R  S SS ++ S S S+SE K +S   +    +++   Q
Sbjct: 125 GDESVKKFEETKPISEMSLHSRSSSSSSSALSSSS-SVSESKRLSKTFSDPTKQSLRNPQ 184

Query: 153 REVEWSRRS---CYAFNSSVRLLMVSLGVTVMQGRVLGILITSISVYFFAW 195
                 + +   C  FNS    L++SL VTV  G+ + IL++SI +YFF W
Sbjct: 185 NPAAKPKNTEVVCSGFNSGTYFLLISLAVTVFWGKAIAILVSSIWLYFFPW 233

[Close]

BLAST of Cucsa.119670.1 vs. NCBI nr
Match: gi|657975471|ref|XP_008379586.1| (PREDICTED: uncharacterized protein LOC103442563 [Malus domestica])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 67/175 (38.29%), Postives = 86/175 (49.14%), Query Frame = 1


Query: 33  STNSAISLRPKPALSRTARAIVFGTILIKRVRERKIHRQPKSDGRKRSLSLDSVRVPVKE 92
           S NS +S RP    S+  +A+VF TIL K+ R+RK+ RQ  S G KR  SL S       
Sbjct: 65  SENSKMSPRPSRTFSKAVKAVVFETILAKKARDRKVCRQD-SFGSKRCFSLRSEASLNLG 124

Query: 93  NRELVKKELDGINQENREISL------SSGSIQSFSISISEPKISNKKTGCGIE------ 152
             E VKK  + I   N E+SL      SS S  S S S+SE K  +K      +      
Sbjct: 125 GDESVKKFEETI--PNSEMSLHSRSSSSSSSALSSSSSVSESKRLSKTFSDPTKQSLRNP 184

Query: 153 ---AIGVKQREVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVLGILITSISVYFF 193
              A   K  EV      C  FNS    L++SL VTV  G+ + IL++SI +YFF
Sbjct: 185 QNPAAKPKNTEVR-----CSGFNSGTYFLLISLAVTVFWGKAIAILVSSIWLYFF 231

[Close]

BLAST of Cucsa.119670.1 vs. NCBI nr
Match: gi|1009128008|ref|XP_015880996.1| (PREDICTED: uncharacterized protein At5g23160-like [Ziziphus jujuba])

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 64/189 (33.86%), Postives = 92/189 (48.68%), Query Frame = 1


Query: 30  CRCSTNSAISLRP-KPALSRTARAIVFGTILIKRVRERKIHRQP----KSDGRKRSLSLD 89
           C  ++ ++I+L+P K + SR  +A+ F TIL KRVR+RK  R          R+RS   D
Sbjct: 62  CSMNSENSITLQPQKRSFSRVIKAVFFETILAKRVRDRKESRSNIMLLSKSSRQRSSDSD 121

Query: 90  SVRVPVKENRELVKKELDGINQENREISLSSG---SIQSFSISISEPKISNKKTGCGIEA 149
           S         EL+       N + +EI    G   S  S S S  EPKIS++ +   ++ 
Sbjct: 122 S--------DELMNLSPANSNFQFQEIETKMGLFHSSTSLSNSTPEPKISSRNS---VKQ 181

Query: 150 IGVKQR---------EVEWSRRSCYAFNSSVRLLMVSLGVTVMQGRVLGILITSISVYFF 202
              KQR         + E + + C   NS + LL++SL VTV+ GR+  IL TSI  YF 
Sbjct: 182 KLEKQRNHQHGEPETKSEETNKRCSVLNSGLYLLLISLTVTVLWGRICAILFTSIWFYFL 233

The following BLAST results are available for this feature:

BLAST of Cucsa.119670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE38_CUCSA	1.7e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121450 PE=4 SV=1	[more]
A0A061E4J7_THECC	8.7e-08	31.63	Uncharacterized protein OS=Theobroma cacao GN=TCM_007861 PE=4 SV=1	[more]

BLAST of Cucsa.119670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444407\|ref\|XP_004139966.1\|	2.4e-107	100.00	PREDICTED: uncharacterized protein LOC101210838 [Cucumis sativus]	[more]
gi\|659094757\|ref\|XP_008448227.1\|	1.1e-96	92.54	PREDICTED: uncharacterized protein LOC103490482 [Cucumis melo]	[more]
gi\|694324381\|ref\|XP_009353215.1\|	3.2e-11	35.09	PREDICTED: uncharacterized protein LOC103944478 [Pyrus x bretschneideri]	[more]
gi\|657975471\|ref\|XP_008379586.1\|	3.2e-11	38.29	PREDICTED: uncharacterized protein LOC103442563 [Malus domestica]	[more]
gi\|1009128008\|ref\|XP_015880996.1\|	3.5e-10	33.86	PREDICTED: uncharacterized protein At5g23160-like [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.119670	Cucsa.119670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.119670.1	Cucsa.119670.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.119670.1.CDS.1	Cucsa.119670.1.CDS.1	CDS
Cucsa.119670.1.CDS.2	Cucsa.119670.1.CDS.2	CDS
Cucsa.119670.1.CDS.3	Cucsa.119670.1.CDS.3	CDS