Cucsa.073270.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.073270.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BUD13 like
Location	scaffold00765 : 850094 .. 851535 (+)
Sequence length	841

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAACTCGAGAAAGATAGACCATTTGCACGGTCAAGGTAAAACTGAGCACTCTTAGTTTTTAATTTTAATTGTACTTCTGGAATATCAAATAAAaTTGGAAGGATACAGAGATTATTTTACTATTACCTGTGTGCCACTCTATTAGCTACACGTTGAATGGTTTATGAAAGGATACTCTCCAATTTTATTTTTAGTATCTTCTTTATCCTCTTTCCTTTtATTTCCATTTCTAGGATCCATTACTTTAAGAGATTTCCTAATGCCTAGATTGTTGAAAATGGAACCCAAGTGCAATTTTTTCTGTACCTTTATAGGACTACTTAATGTTTGTCAAATTGCTTTCAGGAATGATGCAGAACTTGACACAATGCTGAGGGATAGATTGAGATGGGGTGATCCTATGGCACACTTGGTGAAGGTAAATTCACTCTAATTCTAAAATGAGCTGAAGTTGAAGAATTGATTGCAGGTTTGATCTTTTGCATTGCACACATTGCAGAAAAGACAATCTGAGATGGCTCTTCCTGATTTAGGAGACAATGAAAAGATGAAGGAATCAGGGTTCATGATTCCTCAGGACATTCCACCTCACAGCTGGCTAAAAAGaGGATTGGATGCTGCACCTAATAGATATGGTATAAGACCCGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGTTAGTTCATTTCTGGTTCTTTCTATATTATTACTTGGTGTTTGAAATAATCAAAATAGATTAAGTTATAGTTTTtGGTCTTGAACTATATCAGTACTTAAAAaCTTATGACAGTTTCCAAATTTTGAGTCAGCATCGTGAAGTGGCATTTACATGTATGTTACAATTTGGTCCCTTCATCTCTAGTTTAGATTTCAAATTTTCCATCTAAGTAATTCATAAATAGGATAGTGTTCAGACAACCTATATATGTTTTTACAATTAGATCCTTCAACAATATCTATTTCTTTAATGAAGTCAGTACGGGTGATTTTGAAATAATGTAAAAGTGTACTGGTATATTTTGAACTTTTACATGTTTGAGGACGTCATTAAAATTAATTTGAGTTTAGTGTTAAGAAGTCAGCCAGGCCTTTGTATATTCTTTTTAACTGCGATGTGCTTGAAAAACAGCCAAAACAGTTCATATCTTACATCTATGTTCTTAGGTCTTACATTGTTTAATTGATTTTCCTCGTAGGATTCGAGAAGCAAATGTTCAAGAGGATGAATGAGAAACAAGCTACAGAAAGGGAAGCATATCTTTGGTCTGTGTCTGATATGTAAGATGACAGGAAGTTGCTTTTCAAGATGGTGATTTCCTGCAACGATATGTAGCTTCTTTTCAAGAAGATGATTTTTATAATTTTGTATGTTCATCCGTAATAGCTATTGAGGAATTCGTTTTTCTATATTACATTTGATATGGTATTCAACACGG

mRNA sequence

TAGAACTCGAGAAAGATAGACCATTTGCACGGTCAAGGTAAAACTGAGCACTCTTAGTTTTTAATTTTAATTGTACTTCTGGAATATCAAATAAAATTGGAAGGATACAGAGATTATTTTACTATTACCTGTGTGCCACTCTATTAGCTACACGTTGAATGGTTTATGAAAGGATACTCTCCAATTTTATTTTTAGTATCTTCTTTATCCTCTTTCCTTTTATTTCCATTTCTAGGATCCATTACTTTAAGAGATTTCCTAATGCCTAGATTGTTGAAAATGGAACCCAAGTGCAATTTTTTCTGTACCTTTATAGGACTACTTAATGTTTGTCAAATTGCTTTCAGGAATGATGCAGAACTTGACACAATGCTGAGGGATAGATTGAGATGGGGTGATCCTATGGCACACTTGGTGAAGAAAAGACAATCTGAGATGGCTCTTCCTGATTTAGGAGACAATGAAAAGATGAAGGAATCAGGGTTCATGATTCCTCAGGACATTCCACCTCACAGCTGGCTAAAAAGAGGATTGGATGCTGCACCTAATAGATATGGTATAAGACCCGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGATTCGAGAAGCAAATGTTCAAGAGGATGAATGAGAAACAAGCTACAGAAAGGGAAGCATATCTTTGGTCTGTGTCTGATATGTAAGATGACAGGAAGTTGCTTTTCAAGATGGTGATTTCCTGCAACGATATGTAGCTTCTTTTCAAGAAGATGATTTTTATAATTTTGTATGTTCATCCGTAATAGCTATTGAGGAATTCGTTTTTCTATATTACATTTGATATGGTATTCAACACGG

Coding sequence (CDS)

ATGAAAGGATACTCTCCAATTTTATTTTTAGTATCTTCTTTATCCTCTTTCCTTTtATTTCCATTTCTAGGATCCATTACTTTAAGAGATTTCCTAATGCCTAGATTGTTGAAAATGGAACCCAAGTGCAATTTTTTCTGTACCTTTATAGGACTACTTAATGTTTGTCAAATTGCTTTCAGGAATGATGCAGAACTTGACACAATGCTGAGGGATAGATTGAGATGGGGTGATCCTATGGCACACTTGGTGAAGAAAAGACAATCTGAGATGGCTCTTCCTGATTTAGGAGACAATGAAAAGATGAAGGAATCAGGGTTCATGATTCCTCAGGACATTCCACCTCACAGCTGGCTAAAAAGaGGATTGGATGCTGCACCTAATAGATATGGTATAAGACCCGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGATTCGAGAAGCAAATGTTCAAGAGGATGAATGAGAAACAAGCTACAGAAAGGGAAGCATATCTTTGGTCTGTGTCTGATATGTAA

Protein sequence

MKGYSPILFLVSSLSSFLLFPFLGSITLRDFLMPRLLKMEPKCNFFCTFIGLLNVCQIAFRNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM*

Homology

[Close]

BLAST of Cucsa.073270.1 vs. Swiss-Prot
Match: BUD13_MOUSE (BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-16
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 62  NDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKR 121
           +D +LD MLR++ R GDPMA+ +KK +++        N+K+K          P +S    
Sbjct: 545 DDEDLDRMLREQEREGDPMANFIKKNKAKE-----NKNKKVK----------PRYS---- 604

Query: 122 GLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           G    PNR+ I PG  WDGVDRSNGFE++ F R+  K+A E  AY WSV DM
Sbjct: 605 GPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYKWSVEDM 637

[Close]

BLAST of Cucsa.073270.1 vs. Swiss-Prot
Match: BUD13_HUMAN (BUD13 homolog OS=Homo sapiens GN=BUD13 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 62  NDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKR 121
           +D +LD MLR++ R GDPMA+ +KK +++        N+K++          P +S    
Sbjct: 527 DDEDLDRMLREQEREGDPMANFIKKNKAKE-----NKNKKVR----------PRYS---- 586

Query: 122 GLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           G    PNR+ I PG  WDGVDRSNGFE++ F R+  K+A E  AY WSV DM
Sbjct: 587 GPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYKWSVEDM 619

[Close]

BLAST of Cucsa.073270.1 vs. Swiss-Prot
Match: BUD13_CHICK (BUD13 homolog OS=Gallus gallus GN=BUD13 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 1


Query: 62  NDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKR 121
           +D +LD MLR++ R GDPMA  ++KR+++ +       EK + SG       PP      
Sbjct: 467 DDEDLDRMLREQEREGDPMAEFIRKRKAKESKEK---KEKPRYSG-----PAPPL----- 526

Query: 122 GLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
                 NR+ I PG  WDGVDRSNGFE+Q F RM  K+A +  AY WS+ DM
Sbjct: 527 ------NRFNIWPGHRWDGVDRSNGFEQQFFARMANKKAVQELAYKWSIEDM 559

[Close]

BLAST of Cucsa.073270.1 vs. Swiss-Prot
Match: BUD13_RAT (BUD13 homolog OS=Rattus norvegicus GN=Bud13 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-15
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 62  NDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKR 121
           +D +LD MLR++ R GDPMA+ +KK +++        N+K++          P ++    
Sbjct: 544 DDEDLDRMLREQEREGDPMANFIKKNKAKE-----NKNKKVR----------PRYN---- 603

Query: 122 GLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           G    PNR+ I PG  WDGVDRSNGFE++ F R+  K+A E  AY WSV DM
Sbjct: 604 GPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYKWSVEDM 636

[Close]

BLAST of Cucsa.073270.1 vs. Swiss-Prot
Match: CWC26_SCHPO (Pre-mRNA-splicing factor cwf26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf26 PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 38/114 (33.33%), Postives = 57/114 (50.00%), Query Frame = 1


Query: 60  FRNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWL 119
           + +D E +  L++R RW DP A  +  +           + K    G+            
Sbjct: 219 YEDDPEYNKELKERSRWNDPAASFLTNKPV---------SSKATYQGY------------ 278

Query: 120 KRGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
                A PNR+ IRPG  WDG+ R NGFE + F+R NE++A E EA++W++ DM
Sbjct: 279 -----APPNRFNIRPGHRWDGIIRGNGFENKWFQRQNERKAQEHEAHMWAIEDM 306

[Close]

BLAST of Cucsa.073270.1 vs. TrEMBL
Match: A0A0A0LTH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428990 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 7.6e-61
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK
Sbjct: 444 RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 503

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM
Sbjct: 504 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 556

[Close]

BLAST of Cucsa.073270.1 vs. TrEMBL
Match: A0A068V8C4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019305001 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-51
Identity = 96/113 (84.96%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           R+D ELD ML++R+RWGDPMAHLVKKRQ E  + DLGD+EKMKESGF+IPQ+IP HSWL+
Sbjct: 462 RDDPELDRMLKERVRWGDPMAHLVKKRQFEPVMEDLGDDEKMKESGFIIPQEIPSHSWLR 521

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGI+PGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM
Sbjct: 522 RGLDAAPNRYGIKPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 574

[Close]

BLAST of Cucsa.073270.1 vs. TrEMBL
Match: D7TU07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00850 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.2e-51
Identity = 94/113 (83.19%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           R+D ELD +L+DR+RWGDPMAHLVK++ SE+ LPDLGD EKMKESGF+IPQ+IP HSW+K
Sbjct: 368 RDDPELDKILKDRVRWGDPMAHLVKRKNSELILPDLGDGEKMKESGFIIPQEIPSHSWIK 427

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGIRPGRHWDGVDRS GFEKQMFKR NEKQATEREAYLWSV+DM
Sbjct: 428 RGLDAAPNRYGIRPGRHWDGVDRSTGFEKQMFKRTNEKQATEREAYLWSVADM 480

[Close]

BLAST of Cucsa.073270.1 vs. TrEMBL
Match: W9S5G4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023337 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.3e-51
Identity = 93/113 (82.30%), Postives = 108/113 (95.58%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           R+D ELD ML++R+RWGDPMAHLVK++QSE  LP+LGD+EKMKESGF+IPQDIP HSWLK
Sbjct: 474 RDDPELDKMLKERVRWGDPMAHLVKRKQSEPVLPNLGDSEKMKESGFIIPQDIPNHSWLK 533

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGI+PGRHWDGVDRS+G+EK++FKRMNEK+ATEREAYLWSVSDM
Sbjct: 534 RGLDAAPNRYGIKPGRHWDGVDRSSGYEKELFKRMNEKRATEREAYLWSVSDM 586

[Close]

BLAST of Cucsa.073270.1 vs. TrEMBL
Match: B9N2S3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08550g PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-50
Identity = 94/113 (83.19%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           R+D ELD ML +R+RWGDPMAHLVKK+ SE+ L DLGD+EKMKESGF+IPQDIP HSW+K
Sbjct: 437 RDDPELDKMLMERVRWGDPMAHLVKKKHSELDLADLGDSEKMKESGFIIPQDIPSHSWIK 496

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGIRPGRHWDGVDRSNG+EKQ+ KR+NEKQATEREAYLWSVSDM
Sbjct: 497 RGLDAAPNRYGIRPGRHWDGVDRSNGYEKQLVKRVNEKQATEREAYLWSVSDM 549

[Close]

BLAST of Cucsa.073270.1 vs. TAIR10
Match: AT1G31870.1 (AT1G31870.1 unknown protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-43
Identity = 78/113 (69.03%), Postives = 97/113 (85.84%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           R+D ELD M+++R+R+GDPMAHLVKKR+ E  L DLGD+E+MK+SGF+IPQ +P HSWL 
Sbjct: 449 RDDPELDQMMKERVRFGDPMAHLVKKRKYETTLVDLGDDEEMKKSGFIIPQSVPKHSWLT 508

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           R L+AA NRYGI+PGRHWDGVDRSNG EK + K+ NE++ATE EAYLWSV+DM
Sbjct: 509 RRLEAASNRYGIKPGRHWDGVDRSNGTEKDLIKKTNERKATEIEAYLWSVADM 561

[Close]

BLAST of Cucsa.073270.1 vs. NCBI nr
Match: gi|778673687|ref|XP_011650042.1| (PREDICTED: BUD13 homolog [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK
Sbjct: 444 RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 503

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM
Sbjct: 504 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 556

[Close]

BLAST of Cucsa.073270.1 vs. NCBI nr
Match: gi|659125712|ref|XP_008462822.1| (PREDICTED: BUD13 homolog [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 9.2e-60
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           RNDAELD+MLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK
Sbjct: 445 RNDAELDSMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 504

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEK+ATEREAYLWSVSDM
Sbjct: 505 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKRATEREAYLWSVSDM 557

[Close]

BLAST of Cucsa.073270.1 vs. NCBI nr
Match: gi|661879520|emb|CDP16792.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 210.7 bits (535), Expect = 2.1e-51
Identity = 96/113 (84.96%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           R+D ELD ML++R+RWGDPMAHLVKKRQ E  + DLGD+EKMKESGF+IPQ+IP HSWL+
Sbjct: 462 RDDPELDRMLKERVRWGDPMAHLVKKRQFEPVMEDLGDDEKMKESGFIIPQEIPSHSWLR 521

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGI+PGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM
Sbjct: 522 RGLDAAPNRYGIKPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 574

[Close]

BLAST of Cucsa.073270.1 vs. NCBI nr
Match: gi|743864819|ref|XP_011032023.1| (PREDICTED: BUD13 homolog [Populus euphratica])

HSP 1 Score: 210.3 bits (534), Expect = 2.7e-51
Identity = 96/113 (84.96%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           R+D ELD ML +R+RWGDPMAHLVKK+ SE  L DLGD+EKMKESGF+IPQDIP HSW+K
Sbjct: 442 RDDPELDKMLMERVRWGDPMAHLVKKKHSEPVLADLGDSEKMKESGFIIPQDIPSHSWIK 501

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGIRPGRHWDGVDRSNG+EKQ+FKRMNEKQATEREAYLWSVSDM
Sbjct: 502 RGLDAAPNRYGIRPGRHWDGVDRSNGYEKQLFKRMNEKQATEREAYLWSVSDM 554

[Close]

BLAST of Cucsa.073270.1 vs. NCBI nr
Match: gi|225427278|ref|XP_002278878.1| (PREDICTED: BUD13 homolog [Vitis vinifera])

HSP 1 Score: 209.1 bits (531), Expect = 6.0e-51
Identity = 94/113 (83.19%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 61  RNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLK 120
           R+D ELD +L+DR+RWGDPMAHLVK++ SE+ LPDLGD EKMKESGF+IPQ+IP HSW+K
Sbjct: 368 RDDPELDKILKDRVRWGDPMAHLVKRKNSELILPDLGDGEKMKESGFIIPQEIPSHSWIK 427

Query: 121 RGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 174
           RGLDAAPNRYGIRPGRHWDGVDRS GFEKQMFKR NEKQATEREAYLWSV+DM
Sbjct: 428 RGLDAAPNRYGIRPGRHWDGVDRSTGFEKQMFKRTNEKQATEREAYLWSVADM 480

The following BLAST results are available for this feature:

BLAST of Cucsa.073270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BUD13_MOUSE	4.8e-16	43.75	BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1	[more]
BUD13_HUMAN	1.1e-15	42.86	BUD13 homolog OS=Homo sapiens GN=BUD13 PE=1 SV=1	[more]
BUD13_CHICK	1.1e-15	42.86	BUD13 homolog OS=Gallus gallus GN=BUD13 PE=2 SV=1	[more]
BUD13_RAT	2.4e-15	41.96	BUD13 homolog OS=Rattus norvegicus GN=Bud13 PE=1 SV=1	[more]
CWC26_SCHPO	5.0e-13	33.33	Pre-mRNA-splicing factor cwf26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Cucsa.073270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTH5_CUCSA	7.6e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428990 PE=4 SV=1	[more]
A0A068V8C4_COFCA	1.4e-51	84.96	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019305001 PE=4 SV=1	[more]
D7TU07_VITVI	4.2e-51	83.19	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00850 PE=4 SV=...	[more]
W9S5G4_9ROSA	9.3e-51	82.30	Uncharacterized protein OS=Morus notabilis GN=L484_023337 PE=4 SV=1	[more]
B9N2S3_POPTR	2.1e-50	83.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08550g PE=4 SV=1	[more]

BLAST of Cucsa.073270.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31870.1	1.3e-43	69.03	unknown protein	[more]

BLAST of Cucsa.073270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673687\|ref\|XP_011650042.1\|	1.1e-60	100.00	PREDICTED: BUD13 homolog [Cucumis sativus]	[more]
gi\|659125712\|ref\|XP_008462822.1\|	9.2e-60	98.23	PREDICTED: BUD13 homolog [Cucumis melo]	[more]
gi\|661879520\|emb\|CDP16792.1\|	2.1e-51	84.96	unnamed protein product [Coffea canephora]	[more]
gi\|743864819\|ref\|XP_011032023.1\|	2.7e-51	84.96	PREDICTED: BUD13 homolog [Populus euphratica]	[more]
gi\|225427278\|ref\|XP_002278878.1\|	6.0e-51	83.19	PREDICTED: BUD13 homolog [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018609	Bud13

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.073270	Cucsa.073270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.073270.1	Cucsa.073270.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.073270.1.five_prime_UTR.1	Cucsa.073270.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.073270.1.CDS.1	Cucsa.073270.1.CDS.1	CDS
Cucsa.073270.1.CDS.2	Cucsa.073270.1.CDS.2	CDS
Cucsa.073270.1.CDS.3	Cucsa.073270.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.073270.1.three_prime_UTR.1	Cucsa.073270.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018609	Bud13	PFAM	PF09736	Bud13	coord: 61..156 score: 2.6
None	No IPR available	PANTHER	PTHR31809	FAMILY NOT NAMED	coord: 61..173 score: 1.7