Cucsa.049550.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGCTTCACCAGGACCACCAATATGCATTACTACTGGTGCCGAATTTGTCGAAGAATCATCAGAATTAGCTTAGGAAACCCTTTAGAAATTTCCATTACTTGCCCCTTTTGCTCCAGAAATCTCCGCCATGAATTGGACGTAGCCAGGGCTCGAAATTTCCCTCGTCTCCCCGCCATTTCCCCTCCGATTGTCCAACGGTGGGGATTCGAAGAAACCGATGCGTCATGGATCACGCTCCAATTCCCGAGACCAGCGGTAAATTCCGGGATTGAGGAGATTCCAAGGGTGAGAATTACGGGGAAGCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGAGGAAGTTAGGGAGTTGCCTTGCAAGCATTTTTACCATTCGGATTGTGTTGTTCCTTGGTTGAGAATGCATAACACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGGCGACGAGGGGAGTGGGAGCGGTTTTAATGGCGGAAGGGGTGAGGAATTCCGGGAAGAAGAAGAAGAAGGTGAAAGAAGAGGGAATGGATGGTGGAACTTGGTGTGTTGCTGGTGGCCGTTCCGTGTAGTCGGCGATTGGGCTCGCCGTCTCCGGTTTGCTGATTCGGGTGATAGTTTCTTCGCCGTTGAACGTAAGGTTTTTtCTTTtCAAGTTTCTTCAGAGATGGATGGAGTTGGGAAACAAAATATAAATAACAAACCATTTTTTtATAATCAAAATGAAATCGTTGAGATTATTACAATTATTTTAAATTTTATCTTTAATTTTGTAATTTTAGATTAGATTACTGTGTTTTGAATTCTCTTGTAACCATTTATATTTTTtACTTTTGCTGAGAATTTTTCAAAAAAAAAAAaaTACAAACTACACAATTTATAAACACAACTCCGTATTTGATAAAAGATTAAATGTTAATTTGTATTGGTAGAGTTTGACATAAAATGTCTAATTTCAATCTATATACTTTGGTAGTTTAATATCTACTAGCATTCTAACCATAAATTTTAATAACACATTCACGTAAATATTATAAATATTATTATTATTGTCAAACCAAATAGAATAAAAAATAATTTTGAGAACTATATTAAAAATGTATTGAATACATTCAAACAAATACTAAAATATAATTTTCTTAAAAAaCAAAAAAGTGACAGAAATCCATGAAGATCCTTACACAAGACAACTAGATTCAAAATGACAAAATGGACCATCAAAATCAAACAAGTCAACTTAGAAAAGGACAAAATTTGACCATCAAAATCAAACTAATCAAATTCACAAAAACATAACTAAACTCTAACTCAAAACAATCAAATAGACAAAAAAAAAAATAATAAAAAAAAAAaGaGTTTGCAAAATCTAAATATTTAAATCTAATGTTAATTAATGTGTACTGGTTGGAGTTTGCAGCAGGTTCGTGGATGTACTCTTGGCTAGCCAATTAACCCACCCCCGGTAATATCTACTACATTCCTTACTCTTCATTTCCTTTCATTTCTTAACCAATTGATTAGGTACATGAAATTGTGTTGGATTTAGTAATGTAATTAACAAGCATTTTGCTTTCTTATTCCATTTCTTTCTTGTAAGTAACTACCAAAATTGCAGACAGTCAAAAGGAACCTTTGTTTAAGAACTGTACATCTTTTACTAAAGAAAATAAGACTATATAATAATAGTTCCTTTTGAGGTCTGCAACTTCAAATCTCTCCTTTCATAAATTAATTATATTTTTTtCTAAAACATATATAATTTAAACCCAACCAAGGAGGAGAGTTGGTTCCCTTTGGAAAACAACATCCCTATTTCCCTGCGTAGGGTTAATATAAAGGGAAATATCACCTTTTGTCTTCTTCTTATTCTTCTTCTTATTCTTCTTCGGACTCTCTATACTGACTTTCTTTGTTCTTGAGGAGTGAACCAAAAATGAGTTTCCCATCTGATTGTATTCTTCAGACTATTGTATGTTGATTATGTAGGTGATAGATGTAAATGAGTTGTAGGAGAGAGCGGTCAAGACCCGTTATTCTTAATCCTACAAAGATGAGAAGGGAATGAGTTGTGCTTTTGTAGATATAAATGAATTGATTTTGTACTAAGAAATACTACTACTACGTGCTTTCAACCTATAATCAAGTAAAAAATATGTCAAACCTTACATGAACTGGATGTGACGGATCTTCATTTGTCTGCCCTGATTTGGAGCGAAAAGAAGGCTTGGGTTTAGGTAACAGATCGGGGGGCAACAGTGGTGGAGACTCTACTGGAGATGCACGTGGAGAATAAACACGAGGTTGATTAGCTGGAGGAACGATCAGTCTGGTAGACTTAGGATACGAGATTGGTGGTATTGAATGTTCATGAGGGGAATTTGCAGGAACCATAGAAGGGTTCGGAGACGAGCTTTTGCAATTTGCATGAGGTGGGGAATGGTTTGCTGGTGGTCGCATGGATCTCAACGGATGTGGGCCACTCGGTACTTCTACATGATTGCCAGGCGCTGGGGCAGGGGCTGGAGAAAAACTTGGTGGCATTGCCTTGGAGGTTCTCTTCGGATAAGAAGACAAACTGACACTCTTGACTTCTCCAAAAACAGAATAATCAAGGCCAAGATTTCTTTCAGGAGAGGTGTTGATGATTGCAGCCAACTGCTGTAATCTCTGTGACGTAATGCGTCCCAATTCCGACGTAATAGAAGCCTGAACAATTACGAGTGGTTGCACTGTCGAGCCAATCTTGTTTGTTATTTGCAAATACACATTCTGTATAACAAGAAAAGAAAGAGTAGAATCCAACATCCATTAATCAACTCCAGTCCCAGATACATAAAACTAACAACAATAATATAAAACTCATCTCAAGTCTAAACTTATGATCTCAAGTTCTAGAGATAATATTTGATAAATTCCATCCATAGCAGAAAGTATAAGTTTAACTTAAATAAGTTTTTGTACCTCATAAGACCTCAGACGCAATCCAAACTTTAGCTGGCTCTTGAACTTGGCAAAGTTGTCAAGTATTTCGGAAATGGAGTTAGTAAGAGTGAAGTTAAATACGATCTGGGGAAACTCCCAAATCGAAGCATGTTGAAATGGGATTATAGAAATCCCCCCTGGAAACTTGAGAATTTGAAGTGTCGATGGCTGTCCAAAAATTGATGTCGTCAAAGTAAGGTTGGATTCCGAAAGGAAAAAGTCATATAAAGATGATCTCAGCAGACTTAAGGACACTGGATTTATTGGAGCAGTTATGTATTCAGAAAGAAGACCGAAAACCACGTAAGTCCTGTTTGACTCACCTATATCATGCATGGATAGAATGGAAACCT ATGGCGGCTTCACCAGGACCACCAATATGCATTACTACTGCCAGGGCTCGAAATTTCCCTCGTCTCCCCGCCATTTCCCCTCCGATTGTCCAACGGTGGGGATTCGAAGAAACCGATGCGTCATGGATCACGCTCCAATTCCCGAGACCAGCGGTAAATTCCGGGATTGAGGAGATTCCAAGGGTGAGAATTACGGGGAAGCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGAGGAAGTTAGGGAGTTGCCTTGCAAGCATTTTTACCATTCGGATTGTGTTGTTCCTTGGTTGAGAATGCATAACACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGGCGACGAGGGGAGTGGGAGCGGTTTTAATGGCGGAAGGGGTGAGGAATTCCGGGAAGAAGAAGAAGAAGGTGAAAGAAGAGGGAATGGATGGTGGAACTTGGTGTGTTGCTGGTGGCCGTTCCGTGTAGTCGGCGATTGGGCTCGCCGTCTCCGGTTTGCTGATTCGGGTGATAGTTTCTTCGCCGTTGAACCAGGTTCGTGGATGTACTCTTGGCTAGCCAATTAACCCACCCCCGGTAATATCTACTACATTCCTTACTCTTCATTTCCTTTCATTTCTTAACCAATTGATTAGGTACATGAAATTGTGTTGGATTTAGTAATGTAATTAACAAGCATTTTGCTTTCTTATTCCATTTCTTTCTTGTAAGTAACTACCAAAATTGCAGACAGTCAAAAGGAACCTTTGTTTAAGAACTGTACATCTTTTACTAAAGAAAATAAGACTATATAATAATAGTTCCTTTTGAGGTCTGCAACTTCAAATCTCTCCTTTCataaattaattatatttttttctaaaacatatataatttaaaCCCAACCAAGGAGGAGAGTTGGTTCCCTTTGGAAAACAACATCCCTATTTCCCTGCGTAGGGTTAATATAAAGGGAAATATCACCTTTTGtcttcttcttattcttcttcttattcttcttcGGACTCTCTATACTGACTTTCTTTGTTCTTGAGGAGTGAACCAAAAATGAGTTTCCCATCTGATTGTATTCTTCAGACTATTGTATGTTGATTATGTAGGTGATAGATGTAAATGAGTTGTAGGAGAGAGCGGTCAAGACCCGTTATTCTTAATCCTACAAAGATGAGAAGGGAATGAGTTGTGCTTTTGTAGATATAAATGAATTGATTTTGTACTAAGAAATACTACTACTACGTGCTTTCAACCTATAATCAAGTAAAAAATATGTCAAACCTTACATGAACTGGATGTGACGGATCTTCATTTGTCTGCCCTGATTTGGAGCGAAAAGAAGGCTTGGGTTTAGGTAACAGATCGGGGGGCAACAGTGGTGGAGACTCTACTGGAGATGCACGTGGAGAATAAACACGAGGTTGATTAGCTGGAGGAACGATCAGTCTGGTAGACTTAGGATACGAGATTGGTGGTATTGAATGTTCATGAGGGGAATTTGCAGGAACCATAGAAGGGTTCGGAGACGAGCTTTTGCAATTTGCATGAGGTGGGGAATGGTTTGCTGGTGGTCGCATGGATCTCAACGGATGTGGGCCACTCGGTACTTCTACATGATTGCCAGGCGCTGGGGCAGGGGCTGGAGAAAAACTTGGTGGCATTGCCTTGGAGGTTCTCTTCGGATAAGAAGACAAACTGACACTCTTGACTTCTCCAAAAACAGAATAATCAAGGCCAAGATTTCTTTCAGGAGAGGTGTTGATGATTGCAGCCAACTGCTGTAATCTCTGTGACGTAATGCGTCCCAATTCCGACGTAATAGAAGCCTGAACAATTACGAGTGGTTGCACTGTCGAGCCAATCTTGTTTGTTATTTGCAAATACACATTCTGTATAACAAGAAAAGAAAGAGTAGAATCCAACATCCATTAATCAACTCCAGTCCCAGATACATAAAACTAACAACAATAATATAAAACTCATCTCAAGTCTAAACTTATGATCTCAAGTTCTAGAGATAATATTTGATAAATTCCATCCATAGCAGAAAGTATAAGTTTAACTTAAATAAGTTTTTGTACCTCATAAGACCTCAGACGCAATCCAAACTTTAGCTGGCTCTTGAACTTGGCAAAGTTGTCAAGTATTTCGGAAATGGAGTTAGTAAGAGTGAAGTTAAATACGATCTGGGGAAACTCCCAAATCGAAGCATGTTGAAATGGGATTATAGAAATCCCCCCTGGAAACTTGAGAATTTGAAGTGTCGATGGCTGTCCAAAAATTGATGTCGTCAAAGTAAGGTTGGATTCCGAAAGGAAAAAGTCATATAAAGATGATCTCAGCAGACTTAAGGACACTGGATTTATTGGAGCAGTTATGTATTCAGAAAGAAGACCGAAAACCACGTAAGTCCTGTTTGACTCACCTATATCATGCATGGATAGAATGGAAACCT ATGGCGGCTTCACCAGGACCACCAATATGCATTACTACTGCCAGGGCTCGAAATTTCCCTCGTCTCCCCGCCATTTCCCCTCCGATTGTCCAACGGTGGGGATTCGAAGAAACCGATGCGTCATGGATCACGCTCCAATTCCCGAGACCAGCGGTAAATTCCGGGATTGAGGAGATTCCAAGGGTGAGAATTACGGGGAAGCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGAGGAAGTTAGGGAGTTGCCTTGCAAGCATTTTTACCATTCGGATTGTGTTGTTCCTTGGTTGAGAATGCATAACACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGGCGACGAGGGGAGTGGGAGCGGTTTTAATGGCGGAAGGGGTGAGGAATTCCGGGAAGAAGAAGAAGAAGGTGAAAGAAGAGGGAATGGATGGTGGAACTTGGTGTGTTGCTGGTGGCCGTTCCGTGTAGTCGGCGATTGGGCTCGCCGTCTCCGGTTTGCTGATTCGGGTGATAGTTTCTTCGCCGTTGAACCAGGTTCGTGGATGTACTCTTGGCTAGCCAATTAA MAASPGPPICITTARARNFPRLPAISPPIVQRWGFEETDASWITLQFPRPAVNSGIEEIPRVRITGKHLEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVVPWLRMHNTCPVCRYTLENIGDEGSGSGFNGGRGEEFREEEEEGERRGNGWWNLVCCWWPFRVVGDWARRLRFADSGDSFFAVEPGSWMYSWLAN*
BLAST of Cucsa.049550.1 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 3.5e-23 Identity = 54/141 (38.30%), Postives = 73/141 (51.77%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 8.1e-20 Identity = 50/114 (43.86%), Postives = 64/114 (56.14%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.4e-19 Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.8e-19 Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 3.1e-19 Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TrEMBL
Match: A0A0A0LC10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214060 PE=4 SV=1) HSP 1 Score: 380.6 bits (976), Expect = 1.2e-102 Identity = 173/182 (95.05%), Postives = 176/182 (96.70%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TrEMBL
Match: A0A068TNL0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014914001 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 3.9e-29 Identity = 62/125 (49.60%), Postives = 79/125 (63.20%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TrEMBL
Match: M1C6Z4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023756 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28 Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TrEMBL
Match: A0A0B2RNN4_GLYSO (E3 ubiquitin-protein ligase RING1 OS=Glycine soja GN=glysoja_005509 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 7.4e-28 Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TrEMBL
Match: K7M9N3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G047300 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 7.4e-28 Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TAIR10
Match: AT1G68180.1 (AT1G68180.1 RING/U-box superfamily protein) HSP 1 Score: 112.1 bits (279), Expect = 4.0e-25 Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A) HSP 1 Score: 109.8 bits (273), Expect = 2.0e-24 Identity = 54/141 (38.30%), Postives = 73/141 (51.77%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein) HSP 1 Score: 107.8 bits (268), Expect = 7.6e-24 Identity = 52/118 (44.07%), Postives = 69/118 (58.47%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 98.6 bits (244), Expect = 4.6e-21 Identity = 50/114 (43.86%), Postives = 64/114 (56.14%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20 Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. NCBI nr
Match: gi|449464484|ref|XP_004149959.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus]) HSP 1 Score: 402.9 bits (1034), Expect = 3.2e-109 Identity = 182/188 (96.81%), Postives = 185/188 (98.40%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. NCBI nr
Match: gi|778680175|ref|XP_011651263.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X2 [Cucumis sativus]) HSP 1 Score: 392.5 bits (1007), Expect = 4.4e-106 Identity = 180/188 (95.74%), Postives = 183/188 (97.34%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. NCBI nr
Match: gi|659112139|ref|XP_008456082.1| (PREDICTED: uncharacterized protein LOC103496124 isoform X1 [Cucumis melo]) HSP 1 Score: 384.8 bits (987), Expect = 9.1e-104 Identity = 174/192 (90.62%), Postives = 178/192 (92.71%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. NCBI nr
Match: gi|778680186|ref|XP_011651266.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X3 [Cucumis sativus]) HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102 Identity = 173/179 (96.65%), Postives = 176/179 (98.32%), Query Frame = 1
BLAST of Cucsa.049550.1 vs. NCBI nr
Match: gi|700202433|gb|KGN57566.1| (hypothetical protein Csa_3G214060 [Cucumis sativus]) HSP 1 Score: 380.6 bits (976), Expect = 1.7e-102 Identity = 173/182 (95.05%), Postives = 176/182 (96.70%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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