Cucsa.016990.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACCCTGACCATATTCCAACAACCACCACCATCGCTGCCACTACCACTACCGACCAAGACCAGAGTTCAAAACCAACAACCGAAGACACTGATCAAATCAACAACGAAATGGGTAGTGGACGCTCCTACGAGTGCGTATTTTGCAAACGAGGGTTCACGACGGCTCAAGCCCTAGGTGGCCACATGAACATTCACCGCAAAGACCGTGTTAAAAACAAGCCTAATACTCCTTCTAAGCCTGAACCCTTCACCAACCATTCTTCAACACTTCGCCCGATGTTGACAACCACTGCTGCAGTGACGACAGTATCTCATCACCAATCTTTTCAAACCTATTTCCCCACTTCTTCCACTTGGTGCTTGGGTACTACTACCTCATCACCACCTCACGATCATCAATTCTCATATGTACATAACAACCCTCAAGTTTTGAATACTTTCAAGGATCAAAATTGGACTACAACCAATATGAGCCTCGCCTCGCAGTCGTCGCCTACCCTTGCCTTGAGTGATGGTCGGGACAAGAGATCAGATGGCAATGGTGGTGATGATGATGACGGCGATGAAGAACTCGATTTGGAGCTTCGACTTGGACATGATCG ATGGACCCTGACCATATTCCAACAACCACCACCATCGCTGCCACTACCACTACCGACCAAGACCAGAGTTCAAAACCAACAACCGAAGACACTGATCAAATCAACAACGAAATGGGTAGTGGACGCTCCTACGAGTGCGTATTTTGCAAACGAGGGTTCACGACGGCTCAAGCCCTAGGTGGCCACATGAACATTCACCGCAAAGACCGTGTTAAAAACAAGCCTAATACTCCTTCTAAGCCTGAACCCTTCACCAACCATTCTTCAACACTTCGCCCGATGTTGACAACCACTGCTGCAGTGACGACAGTATCTCATCACCAATCTTTTCAAACCTATTTCCCCACTTCTTCCACTTGGTGCTTGGGTACTACTACCTCATCACCACCTCACGATCATCAATTCTCATATGTACATAACAACCCTCAAGTTTTGAATACTTTCAAGGATCAAAATTGGACTACAACCAATATGAGCCTCGCCTCGCAGTCGTCGCCTACCCTTGCCTTGAGTGATGGTCGGGACAAGAGATCAgatggcaatggtggtgatgatgatgacggcgatgAAGAACTCGATTTGGAGCTTCGACTTGGACATGATCG ATGGACCCTGACCATATTCCAACAACCACCACCATCGCTGCCACTACCACTACCGACCAAGACCAGAGTTCAAAACCAACAACCGAAGACACTGATCAAATCAACAACGAAATGGGTAGTGGACGCTCCTACGAGTGCGTATTTTGCAAACGAGGGTTCACGACGGCTCAAGCCCTAGGTGGCCACATGAACATTCACCGCAAAGACCGTGTTAAAAACAAGCCTAATACTCCTTCTAAGCCTGAACCCTTCACCAACCATTCTTCAACACTTCGCCCGATGTTGACAACCACTGCTGCAGTGACGACAGTATCTCATCACCAATCTTTTCAAACCTATTTCCCCACTTCTTCCACTTGGTGCTTGGGTACTACTACCTCATCACCACCTCACGATCATCAATTCTCATATGTACATAACAACCCTCAAGTTTTGAATACTTTCAAGGATCAAAATTGGACTACAACCAATATGAGCCTCGCCTCGCAGTCGTCGCCTACCCTTGCCTTGAGTGATGGTCGGGACAAGAGATCAGATGGCAATGGTGGTGATGATGATGACGGCGATGAAGAACTCGATTTGGAGCTTCGACTTGGACATGATCG MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTWCLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDGNGGDDDDGDEELDLELRLGHDX
BLAST of Cucsa.016990.1 vs. Swiss-Prot
Match: SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.7e-10 Identity = 60/186 (32.26%), Postives = 83/186 (44.62%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. Swiss-Prot
Match: TAC1_ARATH (Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.3e-08 Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. Swiss-Prot
Match: GIS_ARATH (Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.7e-07 Identity = 43/169 (25.44%), Postives = 68/169 (40.24%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. Swiss-Prot
Match: RBE_ARATH (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2) HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06 Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. Swiss-Prot
Match: ZFP8_ARATH (Zinc finger protein 8 OS=Arabidopsis thaliana GN=ZFP8 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 6.8e-06 Identity = 42/135 (31.11%), Postives = 59/135 (43.70%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TrEMBL
Match: A0A0A0LD93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426920 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 2.8e-67 Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TrEMBL
Match: B9H8J6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24290g PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.7e-27 Identity = 81/188 (43.09%), Postives = 104/188 (55.32%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TrEMBL
Match: A0A0D2P8X6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G144000 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 4.9e-27 Identity = 81/192 (42.19%), Postives = 111/192 (57.81%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TrEMBL
Match: B9GS39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04250g PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27 Identity = 79/188 (42.02%), Postives = 108/188 (57.45%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TrEMBL
Match: A0A061DQ22_THECC (C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=TCM_004127 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25 Identity = 82/195 (42.05%), Postives = 116/195 (59.49%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TAIR10
Match: AT3G23130.1 (AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 67.0 bits (162), Expect = 1.5e-11 Identity = 60/186 (32.26%), Postives = 83/186 (44.62%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TAIR10
Match: AT4G17810.1 (AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11 Identity = 53/199 (26.63%), Postives = 86/199 (43.22%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TAIR10
Match: AT3G23140.1 (AT3G23140.1 C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 64.3 bits (155), Expect = 9.8e-11 Identity = 59/186 (31.72%), Postives = 82/186 (44.09%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TAIR10
Match: AT5G43540.1 (AT5G43540.1 C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 63.5 bits (153), Expect = 1.7e-10 Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. TAIR10
Match: AT2G42410.1 (AT2G42410.1 zinc finger protein 11) HSP 1 Score: 61.6 bits (148), Expect = 6.3e-10 Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. NCBI nr
Match: gi|449462920|ref|XP_004149183.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis sativus]) HSP 1 Score: 424.9 bits (1091), Expect = 8.1e-116 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. NCBI nr
Match: gi|659109033|ref|XP_008454512.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]) HSP 1 Score: 386.0 bits (990), Expect = 4.2e-104 Identity = 185/201 (92.04%), Postives = 190/201 (94.53%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. NCBI nr
Match: gi|700202873|gb|KGN58006.1| (hypothetical protein Csa_3G426920 [Cucumis sativus]) HSP 1 Score: 263.1 bits (671), Expect = 4.1e-67 Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. NCBI nr
Match: gi|743839717|ref|XP_011026015.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Populus euphratica]) HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27 Identity = 81/188 (43.09%), Postives = 104/188 (55.32%), Query Frame = 1
BLAST of Cucsa.016990.1 vs. NCBI nr
Match: gi|224082768|ref|XP_002306831.1| (hypothetical protein POPTR_0005s24290g [Populus trichocarpa]) HSP 1 Score: 131.0 bits (328), Expect = 2.4e-27 Identity = 81/188 (43.09%), Postives = 104/188 (55.32%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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