Cucsa.356450 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTATACATGTCCTATTGTAATTGTACATCTCAGTCTAGCTTTTATGTTCCCTATATATGTAACTTTACTCTGAATTAGAATAGGATAATTTTACTCCAAAATAGGGAGTACACTAAAAACATTGTTTTCTTTTGATATTTGGAGATGATAAGGGTGCTATGGAGGTGTCCTAGTTGAGATGTCGGATGCACCTCTTGATTCTTAGGATCAATTGCTCTTTGTTTTCCTATTGTATATTGAGATTTTGTCTCATTTCGTTATCTGAGGCTGAAAAAAAAATCAAATGATTGGCTAATTCTTTTGCCAATTTCGGATTTACTTTGATCGACAGGTTCTTGGTTCTGCTGGTGTCATTGGTAATCCCATGGGATTTGCTAGGAGATTGGGGATTGGAATAAGAGATTTCTTGTCGGTGCCTGCTAAGACCATTTTGCAGGTTTTTTTTCTTTTCCTTTTCCTTTTCCTTTCTCCTTTTACTTTTTCTTTATTTTCCTTTCTTGTTGGTATACTGAATTCCGATTGTTTTATTTTAAGAGTCCAACTGGGCTGATCACTGGCATGGTACAAGGAACTACAAGTCTCTTAAGTAATACAGTTTATGCATTTAGTGATGCTACCACTCAGTTCAGTAAAGCTGCGAGGAAGGTATTGGTCTGCAATGAGGAATGTCTGTAATCAAGTGGCTTTGATGTATCATTTCTTTATTGGATGCTTATATTTCTGCAGGGTATTGTCGCATTTACGTTTGATGATCAAGCTTTTTCAAGAATTGGGCAACAGCAGACAGGTGTTTCTTTAAACAGTGGTGGTGTCATTAGTGAAGTTTTAGAGGTACAACATTAGTATGTATACTTTTTTTTAACAGAAACCAAACTTTTCATTAATGAAACGAGTAAAAGGCTCAAAGTATAAATAA atttatacatgtcctattgtaattgtacatctcagtctagcttttatgttccctatatatGTTCTTGGTTCTGCTGGTGTCATTGGTAATCCCATGGGATTTGCTAGGAGATTGGGGATTGGAATAAGAGATTTCTTGTCGGTGCCTGCTAAGACCATTTTGCAGAGTCCAACTGGGCTGATCACTGGCATGGTACAAGGAACTACAAGTCTCTTAAGTAATACAGTTTATGCATTTAGTGATGCTACCACTCAGTTCAGTAAAGCTGCGAGGAAGGGTATTGTCGCATTTACGTTTGATGATCAAGCTTTTTCAAGAATTGGGCAACAGCAGACAGGTGTTTCTTTAAACAGTGGTGGTGTCATTAGTGAAGTTTTAGAGAAACCAAACTTTTCATTAATGAAACGAGTAAAAGGCTCAAAGTATAAATAA ATTTATACATGTCCTATTGTAATTGTACATCTCAGTCTAGCTTTTATGTTCCCTATATATGTTCTTGGTTCTGCTGGTGTCATTGGTAATCCCATGGGATTTGCTAGGAGATTGGGGATTGGAATAAGAGATTTCTTGTCGGTGCCTGCTAAGACCATTTTGCAGAGTCCAACTGGGCTGATCACTGGCATGGTACAAGGAACTACAAGTCTCTTAAGTAATACAGTTTATGCATTTAGTGATGCTACCACTCAGTTCAGTAAAGCTGCGAGGAAGGGTATTGTCGCATTTACGTTTGATGATCAAGCTTTTTCAAGAATTGGGCAACAGCAGACAGGTGTTTCTTTAAACAGTGGTGGTGTCATTAGTGAAGTTTTAGAGAAACCAAACTTTTCATTAATGAAACGAGTAAAAGGCTCAAAGTATAAATAA IYTCPIVIVHLSLAFMFPIYVLGSAGVIGNPMGFARRLGIGIRDFLSVPAKTILQSPTGLITGMVQGTTSLLSNTVYAFSDATTQFSKAARKGIVAFTFDDQAFSRIGQQQTGVSLNSGGVISEVLEKPNFSLMKRVKGSKYK*
BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13C_DICDI (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11 Identity = 36/100 (36.00%), Postives = 59/100 (59.00%), Query Frame = 1
BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10 Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 1
BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 4.7e-09 Identity = 33/129 (25.58%), Postives = 64/129 (49.61%), Query Frame = 1
BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13B_HUMAN (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 4.9e-06 Identity = 25/120 (20.83%), Postives = 61/120 (50.83%), Query Frame = 1
BLAST of Cucsa.356450 vs. Swiss-Prot
Match: VP13B_MOUSE (Vacuolar protein sorting-associated protein 13B OS=Mus musculus GN=Vps13b PE=1 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 4.9e-06 Identity = 26/120 (21.67%), Postives = 61/120 (50.83%), Query Frame = 1
BLAST of Cucsa.356450 vs. TrEMBL
Match: A0A0A0LY06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652800 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44 Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 1
BLAST of Cucsa.356450 vs. TrEMBL
Match: W9QCI9_9ROSA (Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L484_010461 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 3.6e-40 Identity = 94/137 (68.61%), Postives = 106/137 (77.37%), Query Frame = 1
BLAST of Cucsa.356450 vs. TrEMBL
Match: A0A164ZBQ8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018920 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 4.0e-39 Identity = 89/137 (64.96%), Postives = 108/137 (78.83%), Query Frame = 1
BLAST of Cucsa.356450 vs. TrEMBL
Match: B9RXC4_RICCO (Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 8.8e-39 Identity = 90/123 (73.17%), Postives = 103/123 (83.74%), Query Frame = 1
BLAST of Cucsa.356450 vs. TrEMBL
Match: U5GUT8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45980g PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 8.8e-39 Identity = 87/123 (70.73%), Postives = 103/123 (83.74%), Query Frame = 1
BLAST of Cucsa.356450 vs. TAIR10
Match: AT5G24740.1 (AT5G24740.1 Protein of unknown function (DUF1162)) HSP 1 Score: 142.1 bits (357), Expect = 2.6e-34 Identity = 74/137 (54.01%), Postives = 95/137 (69.34%), Query Frame = 1
BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]) HSP 1 Score: 213.0 bits (541), Expect = 3.4e-52 Identity = 115/137 (83.94%), Postives = 120/137 (87.59%), Query Frame = 1
BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|659085898|ref|XP_008443665.1| (PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo]) HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51 Identity = 114/137 (83.21%), Postives = 119/137 (86.86%), Query Frame = 1
BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|700211552|gb|KGN66648.1| (hypothetical protein Csa_1G652800 [Cucumis sativus]) HSP 1 Score: 187.6 bits (475), Expect = 1.5e-44 Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 1
BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]) HSP 1 Score: 187.2 bits (474), Expect = 2.0e-44 Identity = 100/114 (87.72%), Postives = 102/114 (89.47%), Query Frame = 1
BLAST of Cucsa.356450 vs. NCBI nr
Match: gi|659085900|ref|XP_008443666.1| (PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo]) HSP 1 Score: 185.3 bits (469), Expect = 7.7e-44 Identity = 99/114 (86.84%), Postives = 101/114 (88.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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