Cucsa.291720 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGAAAAaGGAAAAGGAAAAAAaGCGCTGAAAAACCCTGAATGGGGTGGTACCGGCCAGGGGCATCGTCCTTCACTGTCCTAAAaCCCTACTTTCTCTATAACTCTTTAACCACTCCCAAACTCACCAATAGATCTTCTTCGATCGCAGTCATGACGACCAAGTCCGTGGGTGAATCAGATGTTGGCATACTCAGTTACATTTCTTCTCTCCCTGGCTTTCGCGGCATTCTCAAGCAAAGGTCTCAGCTTCTTACCCCCATGCATGCCCTTCATTTCTCAGGGATGCTATAACGCTCAATCCAATTTCGTACTATCTGCTTGATTGTATTGAAGATAAGGGTCAACTCTTAGAATGTGAAATGAAATGTTGAGAGTAAATTTAACTTATGAAACCGTTTTTCTGAATTGATAACAAAATCAGAATGAATGAGACCAAAATGGTAACTTCAACTGCCAATTGTTGTTATGAATTGGTCGACGTAACTGGCACCATGGGAATGTTCTTATGGTTTCATTGCCAGAGATTTTTTGTGGCCGTAATCTGTTCGGAGGAGTGTTTTTTTtCCTATCCCACTTTTGTTGTTTTATCATTTATTAATGAAGTTTCTGATTCCTCAGATAAAAAGGTTCGGTAGTAATGTGTCCATCGTATAGCATCTGTTGTTTGTTCTCGTTCTATTCTTGGAGTGGGAAATAGAGCAGTGAGCCTTTAGGTTGTTGTAGGAATGCTAATAGCAAATAGTATCATTCAACTATATTCTCATAAGGTTTGGATAAAGCCTAAAGGGACAATTTTTACTTTGTTTTTAAGATTTGAAGAAACTTTTACTCAACGATCCAGCTGTAAGACATTTTTTTAAAGCTTTTAGAACCCTATCATTGTAAATTCATCCTTTTTTGGTTTCGATACAGGTATTCTGATTTCATTGTGAATGAAGTTGACACTGATGGAAATGTTGTTCATTTGACGTCATTGGATGCTCCTCCAGAGGTGGTGAAGTTGAATTTCTGTGTTTGTATTGGATGCCTTAGATGTTGATTTCCTTCTTTTGCGTGAACATTTATGGTAATTTTAATTCTTTTGAGGCTTCAGATTGTTTCGGAAAGCGGACCAACGATAGTCCACAGTACAAGCCAGAGTTATGCTTCTGAAATTGAATTGTTTAGATCTCTAGCTGGTGATTCTGATGCTGAGATTTTGGAAATTTTTCTTAAGCAAATCAATTCTGGCGTGAATGATGACATTTTGCCTATTGTATTCTCCCCTGATACAGACAAAACTCATCGAACGGTTAGCTCTAAGACCTTGTTTGTTAATGTATTTGCACATTTATTTTTGCGTATCGTGCATTTGTTGATTCCGAGTAACAACCAGTGCAGGACATCATCTCTTTCTTCTTTTAGCTCATCTTTAGATTATTCCTTTAGTTTTTAACTAAAACTGTCCATTGTGGTACAGATATCTATATCTATTTTCAATGCTAAATATTTTAATTTTGCTCAAAGTGTAACTTCTCTTACCATTCAGTCAGATTGAACAACTAAACAAAGACATATCTTTGTTTTTCATCACCATATACTTTACTCTTTAAAATTGCGGTTTTCAGGCTGTCCACAATTTCTTTAAGAAATTTAAGTTCCTTGTGACCGATACTATTGATGGGCCAGATTCTTCATCAAAATGTGTCCGTGTGAGGGTGGATTCAGGGGCACAGAATAACCGAGGTCGTTTCTCTAAGAAACGGAAAGAAAGGGGCGATAAACCCTTTGATAGTAGAGGTTCGGACAACTGGCCTGAACATGTTGGCAAGTTTCTCAGGTAAGGTATTTTCT ggaaaaaggaaaaggaaaaaaaGCGCTGAAAAACCCTGAATGGGGTGGTACCGGCCAGGGGCATCGTCCTTCACTGTCCTAAAACCCTACTTTCTCTATAACTCTTTAACCACTCCCAAACTCACCAATAGATCTTCTTCGATCGCAGTCATGACGACCAAGTCCGTGGGTGAATCAGATGTTGGCATACTCAGTTACATTTCTTCTCTCCCTGGCTTTCGCGGCATTCTCAAGCAAAGGTATTCTGATTTCATTGTGAATGAAGTTGACACTGATGGAAATGTTGTTCATTTGACGTCATTGGATGCTCCTCCAGAGATTGTTTCGGAAAGCGGACCAACGATAGTCCACAGTACAAGCCAGAGTTATGCTTCTGAAATTGAATTGTTTAGATCTCTAGCTGGTGATTCTGATGCTGAGATTTTGGAAATTTTTCTTAAGCAAATCAATTCTGGCGTGAATGATGACATTTTGCCTATTGTATTCTCCCCTGATACAGACAAAACTCATCGAACGGCTGTCCACAATTTCTTTAAGAAATTTAAGTTCCTTGTGACCGATACTATTGATGGGCCAGATTCTTCATCAAAATGTGTCCGTGTGAGGGTGGATTCAGGGGCACAGAATAACCGAGGTCGTTTCTCTAAGAAACGGAAAGAAAGGGGCGATAAACCCTTTGATAGTAGAGGTTCGGACAACTGGCCTGAACATGTTGGCAAGTTTCTCAGGTAAGGTATTTTCT ATGGGGTGGTACCGGCCAGGGGCATCGTCCTTCACTGTCCTAAAaCCCTACTTTCTCTATAACTCTTTAACCACTCCCAAACTCACCAATAGATCTTCTTCGATCGCAGTCATGACGACCAAGTCCGTGGGTGAATCAGATGTTGGCATACTCAGTTACATTTCTTCTCTCCCTGGCTTTCGCGGCATTCTCAAGCAAAGGTATTCTGATTTCATTGTGAATGAAGTTGACACTGATGGAAATGTTGTTCATTTGACGTCATTGGATGCTCCTCCAGAGATTGTTTCGGAAAGCGGACCAACGATAGTCCACAGTACAAGCCAGAGTTATGCTTCTGAAATTGAATTGTTTAGATCTCTAGCTGGTGATTCTGATGCTGAGATTTTGGAAATTTTTCTTAAGCAAATCAATTCTGGCGTGAATGATGACATTTTGCCTATTGTATTCTCCCCTGATACAGACAAAACTCATCGAACGGCTGTCCACAATTTCTTTAAGAAATTTAAGTTCCTTGTGACCGATACTATTGATGGGCCAGATTCTTCATCAAAATGTGTCCGTGTGAGGGTGGATTCAGGGGCACAGAATAACCGAGGTCGTTTCTCTAAGAAACGGAAAGAAAGGGGCGATAAACCCTTTGATAGTAGAGGTTCGGACAACTGGCCTGAACATGTTGGCAAGTTTCTCAGGTAA MGWYRPGASSFTVLKPYFLYNSLTTPKLTNRSSSIAVMTTKSVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEIVSESGPTIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDTDKTHRTAVHNFFKKFKFLVTDTIDGPDSSSKCVRVRVDSGAQNNRGRFSKKRKERGDKPFDSRGSDNWPEHVGKFLR*
BLAST of Cucsa.291720 vs. Swiss-Prot
Match: PUS7_HUMAN (Pseudouridylate synthase 7 homolog OS=Homo sapiens GN=PUS7 PE=1 SV=2) HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11 Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1
BLAST of Cucsa.291720 vs. Swiss-Prot
Match: PUS7_BOVIN (Pseudouridylate synthase 7 homolog OS=Bos taurus GN=PUS7 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.6e-11 Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 1
BLAST of Cucsa.291720 vs. Swiss-Prot
Match: PUS7_YEAST (Multisubstrate pseudouridine synthase 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS7 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 6.8e-10 Identity = 54/192 (28.12%), Postives = 98/192 (51.04%), Query Frame = 1
BLAST of Cucsa.291720 vs. Swiss-Prot
Match: YH2X_SCHPO (Putative pseudouridine synthase C1A4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1A4.09 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.7e-08 Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1
BLAST of Cucsa.291720 vs. TrEMBL
Match: A0A0A0M0H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690310 PE=4 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 2.8e-127 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1
BLAST of Cucsa.291720 vs. TrEMBL
Match: W9QVC1_9ROSA (Multisubstrate pseudouridine synthase 7 OS=Morus notabilis GN=L484_006163 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 1.0e-76 Identity = 150/224 (66.96%), Postives = 179/224 (79.91%), Query Frame = 1
BLAST of Cucsa.291720 vs. TrEMBL
Match: A0A061F1A0_THECC (Pseudouridine synthase family protein isoform 3 OS=Theobroma cacao GN=TCM_026386 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 1.0e-73 Identity = 147/230 (63.91%), Postives = 178/230 (77.39%), Query Frame = 1
BLAST of Cucsa.291720 vs. TrEMBL
Match: A0A061F9D9_THECC (Pseudouridine synthase family protein isoform 2 OS=Theobroma cacao GN=TCM_026386 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 1.0e-73 Identity = 147/230 (63.91%), Postives = 178/230 (77.39%), Query Frame = 1
BLAST of Cucsa.291720 vs. TrEMBL
Match: A0A061F2I3_THECC (Pseudouridine synthase family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_026386 PE=4 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 2.2e-71 Identity = 147/243 (60.49%), Postives = 179/243 (73.66%), Query Frame = 1
BLAST of Cucsa.291720 vs. TAIR10
Match: AT3G04820.1 (AT3G04820.1 Pseudouridine synthase family protein) HSP 1 Score: 262.3 bits (669), Expect = 2.8e-70 Identity = 135/223 (60.54%), Postives = 171/223 (76.68%), Query Frame = 1
BLAST of Cucsa.291720 vs. NCBI nr
Match: gi|778664378|ref|XP_011660284.1| (PREDICTED: pseudouridylate synthase 7 homolog [Cucumis sativus]) HSP 1 Score: 462.6 bits (1189), Expect = 4.0e-127 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1
BLAST of Cucsa.291720 vs. NCBI nr
Match: gi|700211698|gb|KGN66794.1| (hypothetical protein Csa_1G690310 [Cucumis sativus]) HSP 1 Score: 462.6 bits (1189), Expect = 4.0e-127 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1
BLAST of Cucsa.291720 vs. NCBI nr
Match: gi|659125504|ref|XP_008462716.1| (PREDICTED: pseudouridylate synthase 7 homolog isoform X1 [Cucumis melo]) HSP 1 Score: 445.7 bits (1145), Expect = 5.1e-122 Identity = 221/230 (96.09%), Postives = 222/230 (96.52%), Query Frame = 1
BLAST of Cucsa.291720 vs. NCBI nr
Match: gi|659125508|ref|XP_008462718.1| (PREDICTED: pseudouridylate synthase 7 homolog isoform X2 [Cucumis melo]) HSP 1 Score: 377.9 bits (969), Expect = 1.3e-101 Identity = 187/194 (96.39%), Postives = 188/194 (96.91%), Query Frame = 1
BLAST of Cucsa.291720 vs. NCBI nr
Match: gi|694375900|ref|XP_009364526.1| (PREDICTED: multisubstrate pseudouridine synthase 7 [Pyrus x bretschneideri]) HSP 1 Score: 302.4 bits (773), Expect = 6.9e-79 Identity = 153/229 (66.81%), Postives = 180/229 (78.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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