Cucsa.234200 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTGGTAGAGAAAAGAGTATAATTATTTATAATTTTGGGAGGGATCTTGTGCAATTCTTCTCCCTTCTTCCCAAAACGCGAAGAGGAATCTATTCCCTTCTTCTCCTTCTTCTTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCTTCTACGTGTTCTAACCCAAGCGGAAAAACCTAGGCTTCAGGTACTGTTCTGTAGCTCTCTTTTAGCACCACTCGTTCTTTTATTACTTTTCTCATAGTTTCCTATGCTTGCTTTTCCTTGAATTTCTGTTTTGCATCGCAAGATTTGACTGGAAGTAGCGATTGTTTTCATGCTGCTATTTCTGTTTTTTTTtCTTGCTTGTTCGCTTTCCGGGAATACGAACAATAAAAAGGATTGTTGTTTCCCCCACTTTTTGGGTCTGTTTTTCTGGATGTTTTAGTGGACTCAATCCTGTGTTATGTTGCTGTTCTTCGCTTCTTTTCCCCGGAAGTTGAATTGTTCTAGTTGGTGCAGGAATTTATTTTGGAACATATAAAGGCATATGTAAAAGAATCAATTTTCCATCGAATAATTGCGTTGGTTCGATAAATTCGGTTGATTTAACAAGATTCAGTTGGAAATTTGAATGTTTTTTTTttCTTGTTTGATTGATCATGTAATGCGACCATTGCATTCAATGATGCCCTTTTACGGTTGTTTTGTTTATGGGTTTAAGAGCCCATAATCCTTTTATAAGATTTTTGAGCTCCATTTAATTGTGTCTCTATTTGCAGTGTATTATTGGAGTAAGATAAGTTGTTGCAGAGATGTCTGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAATTGAAAGCCCGGAGTCAGAAAAACGAGCCAGGTTTTGTAGCATACTGCAATGTCTTTGCAGTTACCTTGAGCATCATAACTTTCTCTAATTGTCATCACTGCTTACCCTTTTATCGAATTATTAACGCCCTCTTCGATTTACTTACTTCTTCAAAATTGGCTCTATAAATTGCTTAATCGTCTTTGATTCCCTCCACCCTTCAGTTTTCTGATTATGTCATTAGTTACCTTTTCCTTCTCATTTAATTTTTTCTTGTGAATTGCGATCACAGTTCCCACTTCATCAGAAACTGTACAAGCTGGTCGAAGTAGTGGTTCTTCCAGTTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAAAAGCCTGATGAAGAAGGGCACAGTGATGGTGATCTTGACAAATTTAGTGGCGAGGAAAATGTGGAAGGAGACTTCACAAAGCTCACGGGGAGGAAGAAGAAATTGTTTGAAATTAGGCTTAAGATGGTAATTTTCTATAATTTTTTtAAAAAaTAACGATCAATTATTATTGAGTAGTCATTGACTTAGGAATGGTGGATGCAGAATGAGGCTCGGAAAGCTAATCAAACAGCAATTGCTGCTGAGAAAAAGAAAaTGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCAGCAGAAAACAAATATAAGAAATGGGAGAAGGATCCAGCTCCCTATGGATGGGATGGTGAGTCTCTATTCTTTTGTGCACATGGGCTCTTTTGAATACATGCAACTGCACCTATAATTCCCTTTGACATAAAATTATACTATGCTGATTTTAGCTTTGTGTGTATAGACAGATGCATCTTTTAGTAATTTGATAAGGAACCCTATTATACTGGTTGATGATGGAAACATGATCTGATTCTAGGATATAGATATTATGTGGTGAGATGTCTAGGATACGTATGCATACTCCTGCACTAATTGGTGTGAACTCTTGCCATTGCTGATATCTTCTTTCTTATTCATGTAGTATGGTTTTTCATAGCTATAGTCCTCCATGTTTCTCTCTGGTACAGAGCCAATTAAATTGATGGTTTAATTTTGATTTGTATCATATTCCAATGTAATTACTTTTCTTTAGGGATGGGGGATGGCTTGGGTATAAAGTTTACTTAACTGGTTGTATTTGACCTATTTCTTGCACTATGTTAACACTTGTATTACAAAAAGGTTAAACTACGTTTGTTTTGACAGTCTTTAACCAGAAAACGTTGTATAATGCATACAAAAAGAGGACGAAGAATGTAAATATTGACCTTGAGGAATATAATAAAATGAAAGAATCTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAGTATGGAAAGGTAATATTAGTTCCACTGTATAATTTCCAGTCTCGACCGTAGATGCAATTACTAGATTTCTTAGGATGTAGCTTTCCCCTCTACACTGCAGGCACCTAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAAGACCGAGATGAGAAGCGAAAGTCGTTTAGCCGTAGGAGGAAGTTCCATGAAGACAAGGATATCGATTCCATCAATGACCGTAATGAGCATTTCAACAAAAAGATTGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCCTTACCTGATTAAGGTATTGTTTAGAAGTGGCTCTGGTTCATAAGTCAAGTTAGTTCCTTCATGCAACTTTTTCTCTCTCCATATGCTTGATGCATGTTTTCCTCCTTTTATTGTTTTTtACTCCCTGCTAAGGAAGACGTTCTTCTACGTACGTGCAACCTAAATGCACCCATATTCATGTATCTCTTTCAATCTCAAAGTGAAAAAGTACTTTTAAAAAaGAAATTTTTGTGATGTGGCAACTTGGAATTAGGCACTTGGGTGGGTGGGCTGCGAAAAGATGGTGCAACCAAGTGTTTTACTCCTTTTtACCCTTGCTCCCCTTTCTCTGTTGTAACAAAGTGTATCTGTTTGGCTGAAATTATGTTTTTTTTTtAATTtCTAACCATGGTTTCCTTTGCTTGATTGAATTTTATATTCTTTTtCGTTTTGTGTAGGATTTTCAAGGAAGATCGGAATTCTAGTAGTTGGGAGTATCTAAAGCCTTTCTTCTTTAGTTTCGAAAAGAAGTTATTTCTGTAAAAGATTTCTGGCAAAGCTACATAATTCTCCTTTTAAGTGAAGAGAAAATTGTAAGGTCACATGTCTTAGATTGCAATGTACCATGTAGCAATATATTTGACAATAGCAACTTACTTTGATTGTGTTTCTTTCATTGTGAATACCTTTGTTTCAACAAGTACGAATTAACCCAAACAAAGGATATCATTTTTTC AGTGGTAGAGAAAAGAGTATAATTATTTATAATTTTGGGAGGGATCTTGTGCAATTCTTCTCCCTTCTTCCCAAAACGCGAAGAGGAATCTATTCCcttcttctccttcttcttcttcctcttcctcttcctcctcctcctcctcctcttctACGTGTTCTAACCCAAGCGGAAAAACCTAGGCTTCAGTGTATTATTGGAGTAAGATAAGTTGTTGCAGAGATGTCTGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAATTGAAAGCCCGGAGTCAGAAAAACGAGCCAGTTCCCACTTCATCAGAAACTGTACAAGCTGGTCGAAGTAGTGGTTCTTCCAGTTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAAAAGCCTGATGAAGAAGGGCACAGTGATGGTGATCTTGACAAATTTAGTGGCGAGGAAAATGTGGAAGGAGACTTCACAAAGCTCACGGGGAGGAAGAAGAAATTGTTTGAAATTAGGCTTAAGATGAATGAGGCTCGGAAAGCTAATCAAACAGCAATTGCTGCTGAGAAAAAGAAAATGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCAGCAGAAAACAAATATAAGAAATGGGAGAAGGATCCAGCTCCCTATGGATGGGATGTCTTTAACCAGAAAACGTTGTATAATGCATACAAAAAGAGGACGAAGAATGTAAATATTGACCTTGAGGAATATAATAAAATGAAAGAATCTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAGTATGGAAAGGCACCTAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAAGACCGAGATGAGAAGCGAAAGTCGTTTAGCCGTAGGAGGAAGTTCCATGAAGACAAGGATATCGATTCCATCAATGACCGTAATGAGCATTTCAACAAAAAGATTGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCCTTACCTGATTAAGGTATTGTTTAGAAGTGGCTCTGGTTCATAAGTCAAGATTTTCAAGGAAGATCGGAATTCTAGTAGTTGGGAGTATCTAAAGCCTTTCTTCTTTAGTTTCGAAAAGAAGTTATTTCTGTAAAAGATTTCTGGCAAAGCTACATAATTCTCCTTTTAAGTGAAGAGAAAATTGTAAGGTCACATGTCTTAGATTGCAATGTACCATGTAGCAATATATTTGACAATAGCAACTTACTTTGATTGTGTTTCTTTCATTGTGAATACCTTTGTTTCAACAAGTACGAATTAACCCAAACAAAGGATATCATTTTTTC ATGTCTGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAATTGAAAGCCCGGAGTCAGAAAAACGAGCCAGTTCCCACTTCATCAGAAACTGTACAAGCTGGTCGAAGTAGTGGTTCTTCCAGTTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAAAAGCCTGATGAAGAAGGGCACAGTGATGGTGATCTTGACAAATTTAGTGGCGAGGAAAATGTGGAAGGAGACTTCACAAAGCTCACGGGGAGGAAGAAGAAATTGTTTGAAATTAGGCTTAAGATGAATGAGGCTCGGAAAGCTAATCAAACAGCAATTGCTGCTGAGAAAAAGAAAaTGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCAGCAGAAAACAAATATAAGAAATGGGAGAAGGATCCAGCTCCCTATGGATGGGATGTCTTTAACCAGAAAACGTTGTATAATGCATACAAAAAGAGGACGAAGAATGTAAATATTGACCTTGAGGAATATAATAAAATGAAAGAATCTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAGTATGGAAAGGCACCTAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAAGACCGAGATGAGAAGCGAAAGTCGTTTAGCCGTAGGAGGAAGTTCCATGAAGACAAGGATATCGATTCCATCAATGACCGTAATGAGCATTTCAACAAAAAGATTGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCCTTACCTGATTAA MSDEGRVHPDCRNASNPYHECSEYCFKVIAELKARSQKNEPVPTSSETVQAGRSSGSSSFVPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAENKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEEYNKMKESDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTLEIKNNLERGTALPD*
BLAST of Cucsa.234200 vs. Swiss-Prot
Match: SYF2_XENLA (Pre-mRNA-splicing factor syf2 OS=Xenopus laevis GN=syf2 PE=2 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 3.3e-31 Identity = 85/218 (38.99%), Postives = 124/218 (56.88%), Query Frame = 1
BLAST of Cucsa.234200 vs. Swiss-Prot
Match: SYF2_XENTR (Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 9.6e-31 Identity = 84/218 (38.53%), Postives = 124/218 (56.88%), Query Frame = 1
BLAST of Cucsa.234200 vs. Swiss-Prot
Match: SYF2_DANRE (Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 9.0e-29 Identity = 81/215 (37.67%), Postives = 123/215 (57.21%), Query Frame = 1
BLAST of Cucsa.234200 vs. Swiss-Prot
Match: SYF2_RAT (Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 9.0e-29 Identity = 83/215 (38.60%), Postives = 125/215 (58.14%), Query Frame = 1
BLAST of Cucsa.234200 vs. Swiss-Prot
Match: SYF2_MOUSE (Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 9.0e-29 Identity = 83/215 (38.60%), Postives = 125/215 (58.14%), Query Frame = 1
BLAST of Cucsa.234200 vs. TrEMBL
Match: A0A0A0LJ81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270830 PE=4 SV=1) HSP 1 Score: 646.4 bits (1666), Expect = 1.9e-182 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 1
BLAST of Cucsa.234200 vs. TrEMBL
Match: M5VKL0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009052mg PE=4 SV=1) HSP 1 Score: 503.1 bits (1294), Expect = 2.5e-139 Identity = 247/315 (78.41%), Postives = 273/315 (86.67%), Query Frame = 1
BLAST of Cucsa.234200 vs. TrEMBL
Match: A0A067FL15_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021740mg PE=4 SV=1) HSP 1 Score: 501.1 bits (1289), Expect = 9.7e-139 Identity = 247/313 (78.91%), Postives = 272/313 (86.90%), Query Frame = 1
BLAST of Cucsa.234200 vs. TrEMBL
Match: V4S615_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028903mg PE=4 SV=1) HSP 1 Score: 500.7 bits (1288), Expect = 1.3e-138 Identity = 247/313 (78.91%), Postives = 272/313 (86.90%), Query Frame = 1
BLAST of Cucsa.234200 vs. TrEMBL
Match: M5VXJ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009052mg PE=4 SV=1) HSP 1 Score: 499.2 bits (1284), Expect = 3.7e-138 Identity = 245/315 (77.78%), Postives = 271/315 (86.03%), Query Frame = 1
BLAST of Cucsa.234200 vs. TAIR10
Match: AT2G16860.1 (AT2G16860.1 GCIP-interacting family protein) HSP 1 Score: 439.5 bits (1129), Expect = 1.7e-123 Identity = 219/315 (69.52%), Postives = 256/315 (81.27%), Query Frame = 1
BLAST of Cucsa.234200 vs. NCBI nr
Match: gi|778669761|ref|XP_011649295.1| (PREDICTED: pre-mRNA-splicing factor syf2 [Cucumis sativus]) HSP 1 Score: 646.4 bits (1666), Expect = 2.7e-182 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 1
BLAST of Cucsa.234200 vs. NCBI nr
Match: gi|659115727|ref|XP_008457705.1| (PREDICTED: pre-mRNA-splicing factor syf2 [Cucumis melo]) HSP 1 Score: 635.2 bits (1637), Expect = 6.2e-179 Identity = 309/315 (98.10%), Postives = 313/315 (99.37%), Query Frame = 1
BLAST of Cucsa.234200 vs. NCBI nr
Match: gi|595793463|ref|XP_007200480.1| (hypothetical protein PRUPE_ppa009052mg [Prunus persica]) HSP 1 Score: 503.1 bits (1294), Expect = 3.7e-139 Identity = 247/315 (78.41%), Postives = 273/315 (86.67%), Query Frame = 1
BLAST of Cucsa.234200 vs. NCBI nr
Match: gi|568866771|ref|XP_006486722.1| (PREDICTED: pre-mRNA-splicing factor syf2 [Citrus sinensis]) HSP 1 Score: 502.3 bits (1292), Expect = 6.2e-139 Identity = 248/313 (79.23%), Postives = 272/313 (86.90%), Query Frame = 1
BLAST of Cucsa.234200 vs. NCBI nr
Match: gi|764535191|ref|XP_011458676.1| (PREDICTED: pre-mRNA-splicing factor syf2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 501.5 bits (1290), Expect = 1.1e-138 Identity = 244/315 (77.46%), Postives = 269/315 (85.40%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |