Cucsa.231850 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGAAGAAGGTCAAGTTATTGCATGCCATAAGCAATCTGAATGGGAAGCTCTATTGGCTAAAGCTAAGGAATCTGGAAAATTGGTATAATTTCTTTTGATCTTTCACTTCATTTTCTACATTATCGTCTCAATTGATTCCCGTAGAATTTTCGAATTTTACGTCCTGTTCTTCCTTTTTCCTCTTAGGTGATTGTTTTCATTGTCTTGGTATATAAGTCGTGATGGATTCGCTAGGaTTTCTGATCTCTTATGCTAGTTTATATATTCGATTTATCTAGATTGAATGGTCTTGTGTTGAAATTGATGAGTCTTTTGATCGATTTGTATTCCTTATGATTTCTCAATCCTTCTCTGTTACGCTTTTTGTTAATTAACTCGAACCTTGATTGTGCTATTTTGCGTTAAGCGAACTCTCAGTGATTCTGTATTACTGTTTCTGTTCATTTCTTTGTTCTTgATGTTTCTAGAGTTTTTTCTTGATAGGTTGTGGTGGATTTTACTGCTTCCTGGTGCGGCCCATGCCGTACAATTGCTCCATATTTCTCCGAATTGGCTAAGAATCATTCCGGTGTTATGTTCATTAAAGTGGACGTCGATGAATTGAATGTAACATATTTAACCTTTTTGATTATATCAAAATTTCAATCGTTCTCGTACAAGATAATGTTGCAGTAGTCTCAAGAGAGATTCGTGTTTTCTTTTtGTTTTGATTCCTCTTTTCCTTCCCTAAACAATGGATTCTGTTTCTCTCTGTAGGCTATCGCTAGCGAGTGGAAGATTACTGCAATGCCGACGTTTGTCTTCGTGAAAGGAGGAGAAACAGTTCACAAGATTGTTGGTGCTGATAGAGCGGCACTGTTGAAGAAAATAGAAGAGCTTAAAACTTCAACAACAGCTGCTGCTACTTCTACTGCTTAGAGGAACGTACCCTTATTCTTATTATTATCAGTATGGTGTAATGTTGATTCTGGTTTCTAG ATGGGTGAAGAAGGTCAAGTTATTGCATGCCATAAGCAATCTGAATGGGAAGCTCTATTGGCTAAAGCTAAGGAATCTGGAAAATTGGTTGTGGTGGATTTTACTGCTTCCTGGTGCGGCCCATGCCGTACAATTGCTCCATATTTCTCCGAATTGGCTAAGAATCATTCCGGTGTTATGTTCATTAAAGTGGACGTCGATGAATTGAATGCTATCGCTAGCGAGTGGAAGATTACTGCAATGCCGACGTTTGTCTTCGTGAAAGGAGGAGAAACAGTTCACAAGATTGTTGGTGCTGATAGAGCGGCACTGTTGAAGAAAATAGAAGAGCTTAAAACTTCAACAACAGCTGCTGCTACTTCTACTGCTTAGAGGAACGTACCCTTATTCTTATTATTATCAGTATGGTGTAATGTTGATTCTGGTTTCTAG ATGGGTGAAGAAGGTCAAGTTATTGCATGCCATAAGCAATCTGAATGGGAAGCTCTATTGGCTAAAGCTAAGGAATCTGGAAAATTGGTTGTGGTGGATTTTACTGCTTCCTGGTGCGGCCCATGCCGTACAATTGCTCCATATTTCTCCGAATTGGCTAAGAATCATTCCGGTGTTATGTTCATTAAAGTGGACGTCGATGAATTGAATGCTATCGCTAGCGAGTGGAAGATTACTGCAATGCCGACGTTTGTCTTCGTGAAAGGAGGAGAAACAGTTCACAAGATTGTTGGTGCTGATAGAGCGGCACTGTTGAAGAAAATAGAAGAGCTTAAAACTTCAACAACAGCTGCTGCTACTTCTACTGCTTAG MGEEGQVIACHKQSEWEALLAKAKESGKLVVVDFTASWCGPCRTIAPYFSELAKNHSGVMFIKVDVDELNAIASEWKITAMPTFVFVKGGETVHKIVGADRAALLKKIEELKTSTTAAATSTA*
BLAST of Cucsa.231850 vs. Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31 Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 1
BLAST of Cucsa.231850 vs. Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 2.9e-31 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1
BLAST of Cucsa.231850 vs. Swiss-Prot
Match: TRXH1_ORYSJ (Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30 Identity = 62/119 (52.10%), Postives = 86/119 (72.27%), Query Frame = 1
BLAST of Cucsa.231850 vs. Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30 Identity = 62/119 (52.10%), Postives = 86/119 (72.27%), Query Frame = 1
BLAST of Cucsa.231850 vs. Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2) HSP 1 Score: 133.7 bits (335), Expect = 1.4e-30 Identity = 67/116 (57.76%), Postives = 81/116 (69.83%), Query Frame = 1
BLAST of Cucsa.231850 vs. TrEMBL
Match: A0A0A0LRK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362490 PE=4 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 9.9e-63 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
BLAST of Cucsa.231850 vs. TrEMBL
Match: K7NBX3_SIRGR (Thioredoxin H OS=Siraitia grosvenorii PE=2 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 3.7e-41 Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = 1
BLAST of Cucsa.231850 vs. TrEMBL
Match: C5XB72_SORBI (Thioredoxin OS=Sorghum bicolor GN=Sb02g004850 PE=3 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 3.4e-31 Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 1
BLAST of Cucsa.231850 vs. TrEMBL
Match: Q00P17_EUCGR (Thioredoxin h OS=Eucalyptus grandis PE=2 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 4.5e-31 Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 1
BLAST of Cucsa.231850 vs. TrEMBL
Match: A0A059AS55_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02383 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 4.5e-31 Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 1
BLAST of Cucsa.231850 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3) HSP 1 Score: 136.0 bits (341), Expect = 1.6e-32 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1
BLAST of Cucsa.231850 vs. TAIR10
Match: AT1G19730.1 (AT1G19730.1 Thioredoxin superfamily protein) HSP 1 Score: 133.7 bits (335), Expect = 8.1e-32 Identity = 67/116 (57.76%), Postives = 81/116 (69.83%), Query Frame = 1
BLAST of Cucsa.231850 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1) HSP 1 Score: 133.3 bits (334), Expect = 1.1e-31 Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 1
BLAST of Cucsa.231850 vs. TAIR10
Match: AT1G45145.1 (AT1G45145.1 thioredoxin H-type 5) HSP 1 Score: 125.9 bits (315), Expect = 1.7e-29 Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 1
BLAST of Cucsa.231850 vs. TAIR10
Match: AT3G17880.1 (AT3G17880.1 tetraticopeptide domain-containing thioredoxin) HSP 1 Score: 118.6 bits (296), Expect = 2.7e-27 Identity = 51/111 (45.95%), Postives = 82/111 (73.87%), Query Frame = 1
BLAST of Cucsa.231850 vs. NCBI nr
Match: gi|449469939|ref|XP_004152676.1| (PREDICTED: thioredoxin H-type [Cucumis sativus]) HSP 1 Score: 247.3 bits (630), Expect = 1.4e-62 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
BLAST of Cucsa.231850 vs. NCBI nr
Match: gi|659088023|ref|XP_008444759.1| (PREDICTED: thioredoxin H1-like [Cucumis melo]) HSP 1 Score: 233.8 bits (595), Expect = 1.6e-58 Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 1
BLAST of Cucsa.231850 vs. NCBI nr
Match: gi|343466203|gb|AEM42995.1| (thioredoxin H [Siraitia grosvenorii]) HSP 1 Score: 175.6 bits (444), Expect = 5.2e-41 Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = 1
BLAST of Cucsa.231850 vs. NCBI nr
Match: gi|729367028|ref|XP_010547452.1| (PREDICTED: thioredoxin H1 [Tarenaya hassleriana]) HSP 1 Score: 145.2 bits (365), Expect = 7.6e-32 Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 1
BLAST of Cucsa.231850 vs. NCBI nr
Match: gi|992276007|gb|KXG34557.1| (hypothetical protein SORBI_002G057900 [Sorghum bicolor]) HSP 1 Score: 142.5 bits (358), Expect = 4.9e-31 Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |