Cucsa.195000 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCTAGAATTCTTTCGGCAAGCAGAGAAGAAACGAGGCAGCCAAATTCTCAGAAACTCATCAATGGCGCCGAAGACAGCAAGAGTTAGCCGAAACCCCGATCTCATTCGAGGGGTTGGCAAATACTCGAGGTCCAAGATGTACCACAAGCGAGGTCTCTGGGCAATCAAGGCCAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCAAGCCTAAGGCCGAAGCTCCAGCTGAAAAGCCGCCGAAATTTTACCCTGCCGACGATGTTAAGAAACCCATTGTCAACAAACGTAAAGCTAAGCCCACCAAACTTAGGTAGATATTTCGCAATGTTCTTTCTTTACATCTGATATATAGTTCCCTGTTTTCGAACCTATATTGTATGCTATGGTTGGGAAATTGGGGAATTGGTGTTAACTGTGGAATGAATTAAGTAAAATGTCTTGTGTATTTGTGTTTTCTTTTTCTGGGTAAGGATTATTTTTTTtATTAATCGAGGAAAATTTGAGTTCATGCTGTAGCTGCGAATAAAGGGGGAATTTTTACACATAGGTGACTGCCATAATAGATGGATTTATTTCACACTTGATTTGAGTTTTCGGTTTTAAATTGCGTGAAGTGAATTAATGTTGCTCATTTTCCAAATAATAAACATTTGGTCCATTTCGATTAATTATTCTGCTTGCAGGTCTAGTATTACTCCTGGAACTGTGCTTATCATTCTTACTGGAAGATTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTTTTAGTGACTGGTGAGTTTTCAGCATTCCCTGTAATTGCCTGTCTTCATAATTTTTTATGTAGTAGCACATCGTGTTGGGGTTTGGGAGGTTTTATTATTTATACATGGGGATTAGGTTTTCTCTTCTTTACATTCATTGTGTACTTTGGATTAGATTTGCATTTGGCAGTGTCATTTTTTATGGCTTAGCGTCTTAGCAATTGTTGGCTTAAGCTTTACAAACTGATATTATCTTAATGTGTTGCCGGCATAGTGTTTACCATTGAGAAATTAGAAGTAGGATTCCTTGGGATTTAGATTTTGGTAGTATTAATAGCTTAACCTCGGAACCAATTAATATTGAAATGTCTCGTGCCTTGCATTCTGATTTCTGCCCATATCCCTTGCAATGGTCTTTACATACTACTGAAAATTTTCATGCCTCCAATTTGGCCCCAGAGACGAACATCAACGTTATAATGGGTGATTTCCTATTGCGTCTGGTCTTTTGTGAGAAAGGTTGCTTCTTGTGGTTGGCGAGGGTGTGTACTCTCATATGGAATCTTTGTGGGTAAAAAAaCAATCTAGTGTTTGGTGGGCTGGATAAGGAGTCTAGTGATGTTTGGGCCCTTTTTAGGTTTTCCCTTTAGACTTCAAATTTGATTTATTTGTTTATCTACTATATGCACTATTTTGATCAATTGGGCCTTGTTTCTTTAATGAGTCTTTTGTGCTTGATTTTTTtGTTTTtCCTTGTATGCTTTCATTTTTTCCCTCAATTGGGCCTTGTTTTTTAATGAGCCTTGTTTCCTCAATTGAGCCTTAAGTGGTTTCTTGATCAAAGACATGTCTTAATTTCCTAAGCTTCATGTGCAATATCTGGGAGGGATTGGCTTGATGATGCGGATTGTATTGTATGTTTGGGAGAAGGGTTGCATATAAACTAATGATTAGATGTGGTCTGGGATTTTAGATCCGAAATTCTTGAACCTGCCGACTATCTGAATTTAACGGTTGTCATTTTAGGTCCATTCAAAGTCAATGGCGTTCCTTTAAGACGTGTGAATCAGTCATACGTGATTGCAACCTCCACCAAGGTGGACATTACAGGGGTCAGCGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAAAAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTTGAGGCAGAGAAGGAGGTTCATAGTTTTTtCATTTTTTTtCCACTGTTCAAATATTTCAAATTTTATCATTTCTTTACCCTAATTTTTGGTCTCCGTTGTTGCAATATAGGAAAAAAGTGCACTTCCACAGGACAAAAAAGATGACCAGAAGGCAGTGGACTCAGCTCTGCTGAAGTCCATCGAGGCAGTCTCAGACTTAAAGACATACTTAGCTGCAAGGTTTTCTCTGAAGGCAGGCATGAAACCACATGAACTTGTTTTCTAAATATTTCTCTCTTGGGTGCTGAAACTTCTCGTGGAAGTTGATCCCTACAATCTTCTTGTTCATGTTTTGTTACAAGGATTCTAGATTTGATGTTATGTGTCTTGACGAATTTTGCAGTGAACTTTTATTCATCAATTTTTGCGTTATGTAGCTTCCTTTGACTACTGATAGTGATAAGATATGTACTTTTTTTtCAATTGTATCATTGTTTTCTAGTTGATGAAATACTTGAGAGAATCATTTGGAAAGAAGCCATGGTGGATAGCCAAATTGAGTTGGGCCATTTCTTCAATTGTATGCTTGAGTCTAAAAAGTATTCGTGGTTTCTTTTTCCATTTGGTAAA CCCTAGAATTCTTTCGGCAAGCAGAGAAGAAACGAGGCAGCCAAATTCTCAGAAACTCATCAATGGCGCCGAAGACAGCAAGAGTTAGCCGAAACCCCGATCTCATTCGAGGGGTTGGCAAATACTCGAGGTCCAAGATGTACCACAAGCGAGGTCTCTGGGCAATCAAGGCCAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCAAGCCTAAGGCCGAAGCTCCAGCTGAAAAGCCGCCGAAATTTTACCCTGCCGACGATGTTAAGAAACCCATTGTCAACAAACGTAAAGCTAAGCCCACCAAACTTAGGTCTAGTATTACTCCTGGAACTGTGCTTATCATTCTTACTGGAAGATTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTTTTAGTGACTGGTCCATTCAAAGTCAATGGCGTTCCTTTAAGACGTGTGAATCAGTCATACGTGATTGCAACCTCCACCAAGGTGGACATTACAGGGGTCAGCGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAAAAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTTGAGGCAGAGAAGGAGGAAAAAAGTGCACTTCCACAGGACAAAAAAGATGACCAGAAGGCAGTGGACTCAGCTCTGCTGAAGTCCATCGAGGCAGTCTCAGACTTAAAGACATACTTAGCTGCAAGGTTTTCTCTGAAGGCAGGCATGAAACCACATGAACTTGTTTTCTAAATATTTCTCTCTTGGGTGCTGAAACTTCTCGTGGAAGTTGATCCCTACAATCTTCTTGTTCATGTTTTGTTACAAGGATTCTAGATTTGATGTTATGTGTCTTGACGAATTTTGCAGTGAACTTTTATTCATCAATTTTTGCGTTATGTAGCTTCCTTTGACTACTGATAGTGATAAGATATGTACTTTTTTTTCAATTGTATCATTGTTTTCTAGTTGATGAAATACTTGAGAGAATCATTTGGAAAGAAGCCATGGTGGATAGCCAAATTGAGTTGGGCCATTTCTTCAATTGTATGCTTGAGTCTAAAAAGTATTCGTGGTTTCTTTTTCCATTTGGTAAA ATGGCGCCGAAGACAGCAAGAGTTAGCCGAAACCCCGATCTCATTCGAGGGGTTGGCAAATACTCGAGGTCCAAGATGTACCACAAGCGAGGTCTCTGGGCAATCAAGGCCAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCAAGCCTAAGGCCGAAGCTCCAGCTGAAAAGCCGCCGAAATTTTACCCTGCCGACGATGTTAAGAAACCCATTGTCAACAAACGTAAAGCTAAGCCCACCAAACTTAGGTCTAGTATTACTCCTGGAACTGTGCTTATCATTCTTACTGGAAGATTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTTTTAGTGACTGGTCCATTCAAAGTCAATGGCGTTCCTTTAAGACGTGTGAATCAGTCATACGTGATTGCAACCTCCACCAAGGTGGACATTACAGGGGTCAGCGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTCAAAAGAAGAAAAAGAAGGGAGAAGGAGAATTTTTTGAGGCAGAGAAGGAGGAAAAAAGTGCACTTCCACAGGACAAAAAAGATGACCAGAAGGCAGTGGACTCAGCTCTGCTGAAGTCCATCGAGGCAGTCTCAGACTTAAAGACATACTTAGCTGCAAGGTTTTCTCTGAAGGCAGGCATGAAACCACATGAACTTGTTTTCTAA MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPPKFYPADDVKKPIVNKRKAKPTKLRSSITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF*
BLAST of Cucsa.195000 vs. Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 7.9e-107 Identity = 188/228 (82.46%), Postives = 209/228 (91.67%), Query Frame = 1
BLAST of Cucsa.195000 vs. Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 1.3e-106 Identity = 188/228 (82.46%), Postives = 209/228 (91.67%), Query Frame = 1
BLAST of Cucsa.195000 vs. Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 6.7e-106 Identity = 185/230 (80.43%), Postives = 208/230 (90.43%), Query Frame = 1
BLAST of Cucsa.195000 vs. Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 6.2e-104 Identity = 185/224 (82.59%), Postives = 202/224 (90.18%), Query Frame = 1
BLAST of Cucsa.195000 vs. Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 204.1 bits (518), Expect = 1.6e-51 Identity = 124/257 (48.25%), Postives = 160/257 (62.26%), Query Frame = 1
BLAST of Cucsa.195000 vs. TrEMBL
Match: A0A0A0L9J7_CUCSA (60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_3G698560 PE=3 SV=1) HSP 1 Score: 457.6 bits (1176), Expect = 9.0e-126 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1
BLAST of Cucsa.195000 vs. TrEMBL
Match: A0A0A0KYA4_CUCSA (60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_4G153800 PE=3 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 1.5e-120 Identity = 220/231 (95.24%), Postives = 227/231 (98.27%), Query Frame = 1
BLAST of Cucsa.195000 vs. TrEMBL
Match: A0A0A0K9V0_CUCSA (60S ribosomal protein L6 OS=Cucumis sativus GN=Csa_7G428940 PE=3 SV=1) HSP 1 Score: 421.4 bits (1082), Expect = 7.2e-115 Identity = 209/231 (90.48%), Postives = 220/231 (95.24%), Query Frame = 1
BLAST of Cucsa.195000 vs. TrEMBL
Match: F6HB97_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01390 PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 1.1e-110 Identity = 201/233 (86.27%), Postives = 219/233 (93.99%), Query Frame = 1
BLAST of Cucsa.195000 vs. TrEMBL
Match: A0A067JCI0_JATCU (60S ribosomal protein L6 OS=Jatropha curcas GN=JCGZ_21983 PE=3 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 6.9e-110 Identity = 194/231 (83.98%), Postives = 215/231 (93.07%), Query Frame = 1
BLAST of Cucsa.195000 vs. TAIR10
Match: AT1G74060.1 (AT1G74060.1 Ribosomal protein L6 family protein) HSP 1 Score: 387.9 bits (995), Expect = 4.4e-108 Identity = 188/228 (82.46%), Postives = 209/228 (91.67%), Query Frame = 1
BLAST of Cucsa.195000 vs. TAIR10
Match: AT1G74050.1 (AT1G74050.1 Ribosomal protein L6 family protein) HSP 1 Score: 387.1 bits (993), Expect = 7.6e-108 Identity = 188/228 (82.46%), Postives = 209/228 (91.67%), Query Frame = 1
BLAST of Cucsa.195000 vs. TAIR10
Match: AT1G18540.1 (AT1G18540.1 Ribosomal protein L6 family protein) HSP 1 Score: 384.8 bits (987), Expect = 3.8e-107 Identity = 185/230 (80.43%), Postives = 208/230 (90.43%), Query Frame = 1
BLAST of Cucsa.195000 vs. NCBI nr
Match: gi|449463779|ref|XP_004149609.1| (PREDICTED: 60S ribosomal protein L6-2-like [Cucumis sativus]) HSP 1 Score: 457.6 bits (1176), Expect = 1.3e-125 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1
BLAST of Cucsa.195000 vs. NCBI nr
Match: gi|659123670|ref|XP_008461779.1| (PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo]) HSP 1 Score: 451.1 bits (1159), Expect = 1.2e-123 Identity = 226/231 (97.84%), Postives = 229/231 (99.13%), Query Frame = 1
BLAST of Cucsa.195000 vs. NCBI nr
Match: gi|700198671|gb|KGN53829.1| (hypothetical protein Csa_4G153800 [Cucumis sativus]) HSP 1 Score: 440.3 bits (1131), Expect = 2.1e-120 Identity = 220/231 (95.24%), Postives = 227/231 (98.27%), Query Frame = 1
BLAST of Cucsa.195000 vs. NCBI nr
Match: gi|778692213|ref|XP_004150161.2| (PREDICTED: 60S ribosomal protein L6-1-like [Cucumis sativus]) HSP 1 Score: 440.3 bits (1131), Expect = 2.1e-120 Identity = 220/231 (95.24%), Postives = 227/231 (98.27%), Query Frame = 1
BLAST of Cucsa.195000 vs. NCBI nr
Match: gi|659121739|ref|XP_008460790.1| (PREDICTED: 60S ribosomal protein L6-1-like [Cucumis melo]) HSP 1 Score: 438.0 bits (1125), Expect = 1.1e-119 Identity = 220/231 (95.24%), Postives = 226/231 (97.84%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |