Cucsa.194370 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.194370
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrotransposon protein
Locationscaffold01337 : 796272 .. 797070 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAACAGGAAATGTTTTACCATTCTATGCCATCTACTTAGGACGCCTGGTGGATTAATGTCAACGAAAGTCATGGATGTCGAGGAGATGGTTGTCATGTTCCTCCACATACTAGCACAAGACGTGTAGAATCAAATAATTCAAATGGAGCTTGTGCAGTCTGGTGAGACAATTTTGTGGCATTTCAACATAATCTTATTAGTAGTTCTACGCTTGCATGACGAGTTATGTTGTTGAAAAAACTACAGCCAGTAATGAATACATGCACAGATCCTCAATGAAAGTGGTTTGAGGTAGGCTACTTTATCTATGGTCTATAGTTGGATATGTCCCATTTACGGTCTGCATATTTACAGTTTTCCTACAATGCAAAATTGCCTTTGTGCATTAGATGACACATACATAAAGGTAAACGTGATCGCAACTCGTGCAAGATATAGGACATGAAAGGGCAAGGTTACCACAAACAACCTAGGTGTATGTGATACAAAAGGTAATTTTGTGTTTGTCTTAGCTGATTGGGAAGGATCCGCAACCGATTCCCGCATCCGTAGAGATGCTATTTTAATACCTAATAGATTAAAAGTTCTTAAGGGTAATTATGTACACATCCTTTTTTGCAAATTTATGTTCTATTTCCACAATTAGGCCTTTGAAACATTCAATATATCAACATGGTATTACTACCTATGCAATGTTGGGTACCCCAACGCTGAGGGTTTTCTGACTCTATACAGAAGACAAAGATACCATCTGCAAGAGTTGTGTGGTGCGAGTAATGCACCTAGAACAGCATGA

mRNA sequence

aataaacaggaaatgttttaccattctatgccatctacttaggacgcctggtggattaatgtcaacgaaagtcatggatgtcgaggagatggttgtcatgttcctccacatactagcacaagacatcctcaatgaaagtggtttgagttttcctacaatgcaaaattgcctttgtgcattagatgacacatacataaaggtaaacggcaaggttaccacaaacaacctaggtgtatgtgatacaaaaggtaattttgtgtttgtcttagctgattgggaaggatccgcaaccgattcccgcatccgtagagatgctattttaatacctaatagattaaaagttcttaagggtaattatgcctttgaaacattcaatatatcaacatggtattactacctatgcaatgttgggtaccccaacgctgagggttttctgactctatacagaagacaaagataccatctgcaagagttgtgtggtgcgagtaatgcacctagaacagcatga

Coding sequence (CDS)

AATAAACAGGAAATGTTTTACCATTCTATGCCATCTACTTAGGACGCCTGGTGGATTAATGTCAACGAAAGTCATGGATGTCGAGGAGATGGTTGTCATGTTCCTCCACATACTAGCACAAGACATCCTCAATGAAAGTGGTTTGAGTTTTCCTACAATGCAAAATTGCCTTTGTGCATTAGATGACACATACATAAAGGTAAACGGCAAGGTTACCACAAACAACCTAGGTGTATGTGATACAAAAGGTAATTTTGTGTTTGTCTTAGCTGATTGGGAAGGATCCGCAACCGATTCCCGCATCCGTAGAGATGCTATTTTAATACCTAATAGATTAAAAGTTCTTAAGGGTAATTATGCCTTTGAAACATTCAATATATCAACATGGTATTACTACCTATGCAATGTTGGGTACCCCAACGCTGAGGGTTTTCTGACTCTATACAGAAGACAAAGATACCATCTGCAAGAGTTGTGTGGTGCGAGTAATGCACCTAGAACAGCATGA

Protein sequence

INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFLHILAQDILNESGLSFPTMQNCLCALDDTYIKVNGKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFNISTWYYYLCNVGYPNAEGFLTLYRRQRYHLQELCGASNAPRTA*
Homology
[Close]
BLAST of Cucsa.194370 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.0e-39
Identity = 102/223 (45.74%), Postives = 121/223 (54.26%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFLHILAQDILN--------ESGLS--- 60
           ++R+ F ILCHLLR   GL ST+++DVEEMV MFLH+LA D+ N         SG +   
Sbjct: 15  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQQEFVRSGETVSR 74

Query: 61  -------------------------------FPTMQNCLCALDDTYIKVN---------- 120
                                          +   +NCL ALD TYIKVN          
Sbjct: 75  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFR 134

Query: 121 ---GKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFN 169
              G++ TN LGVCD KG+FV+VLA WEGSA DSRI RDAI   N L+V KG        
Sbjct: 135 TRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG-------- 194

[Close]
BLAST of Cucsa.194370 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.0e-30
Identity = 77/128 (60.16%), Postives = 84/128 (65.62%), Query Frame = 1 

Query: 54  QNCLCALDDTYIKVN-------------GKVTTNNLGVCDTKGNFVFVLADWEGSATDSR 113
           +NCL ALD TYIKVN             G+V TN LGVCDTKG+FV+VLA WEGSA DSR
Sbjct: 138 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 197

Query: 114 IRRDAILIPNRLKVLKGNYAFETFNISTWYYYLCNVGYPNAEGFLTLYRRQRYHLQELCG 169
           I RDA+  PNRLKV KG            YYYL +VGYPNAEGFL  YR QRYHLQE  G
Sbjct: 198 ILRDALSRPNRLKVPKG------------YYYLVDVGYPNAEGFLAPYRGQRYHLQEWRG 253

[Close]
BLAST of Cucsa.194370 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 5.0e-01
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1 

Query: 15 TPGGLMSTKVMDVEEMVVMFLHILAQDI 43
          T  GL ST+V+DVEEMV MFLHILA D+
Sbjct: 57 TIAGLTSTEVVDVEEMVAMFLHILAHDV 84


HSP 2 Score: 105.5 bits (262), Expect = 6.3e-20
Identity = 79/212 (37.26%), Postives = 92/212 (43.40%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFLH------------------------ 60
           +NR  F  LC +L + GGL STK M V+E V +FLH                        
Sbjct: 81  MNRVTFLKLCEMLESIGGLKSTKNMLVDEQVAIFLHIIAHHVKNRVISLNFRRSGESISR 140

Query: 61  ----ILA-----QDILNESGLSFPT---------MQNCLCALDDTYIKV----------- 120
               +LA     Q+ L       PT          +NCL ALD TYI+V           
Sbjct: 141 HFHNVLAAVLKLQEHLFRKPEPIPTNSTDNQWKWFKNCLGALDGTYIRVKVPSADKPRYR 200

Query: 121 --NGKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFN 158
              G + TN LGVC     FVFVL  WEGS  D R+ RDA+   N LKV  G        
Sbjct: 201 TRKGNIATNMLGVCTPDMQFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNG-------- 260

[Close]
BLAST of Cucsa.194370 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 75/212 (35.38%), Postives = 95/212 (44.81%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMV----------------------------- 60
           ++R  FT LC +LRT G L  +K +DVEEMV                             
Sbjct: 74  MDRHTFTTLCSMLRTIGKLKDSKYIDVEEMVALFLHILAHHVKNRVIKFRFLRSGETISR 133

Query: 61  ----VMFLHILAQDIL---------NESGLSFPTMQNCLCALDDTYIKVN---------- 120
               V+   I  Q +L         N +   +   +NCL ALD TYIKVN          
Sbjct: 134 HFNAVLNAVIRLQGVLLKKPEPVSENSTDERWKWFKNCLGALDGTYIKVNVREGDKPRYR 193

Query: 121 ---GKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFN 158
               ++ TN LGVC     F++VL  WEGS +DSR+ RDA+   N L V  G        
Sbjct: 194 TRKNEIATNVLGVCSQDMQFIYVLPGWEGSTSDSRVLRDAVSRRNGLTVPHG-------- 253

[Close]
BLAST of Cucsa.194370 vs. TrEMBL
Match: A0A061GDT4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-19
Identity = 78/212 (36.79%), Postives = 92/212 (43.40%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFLH------------------------ 60
           +NR  F  LC +L + GGL STK M V+E V +FLH                        
Sbjct: 81  MNRVTFFKLCEMLESIGGLKSTKNMLVDEQVAIFLHIIAHHVKNRVISLNFRKSGESISR 140

Query: 61  ----ILA-----QDILNESGLSFPT---------MQNCLCALDDTYIKV----------- 120
               +LA     Q+ L       PT          +NCL ALD TYI+V           
Sbjct: 141 HFHNVLAAVLKLQEYLFRKPEPIPTNSTDNRWKWFKNCLGALDGTYIRVKVPSADKPRYR 200

Query: 121 --NGKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFN 158
              G + TN LGVC     FVFVL  WEGS  D R+ RDA+   N LKV  G        
Sbjct: 201 TRKGDIATNMLGVCTLDMQFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNG-------- 260

[Close]
BLAST of Cucsa.194370 vs. TAIR10
Match: AT5G35695.1 (AT5G35695.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 50.8 bits (120), Expect = 9.4e-07
Identity = 29/83 (34.94%), Postives = 38/83 (45.78%), Query Frame = 1 

Query: 85  FVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFNISTWYYYLCNVGYPNAEGF 144
           F++VL+ WEGSA DSR+  DA+                        +YL + G+ N   F
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALR----------------------KFYLVDCGFANRLNF 84

Query: 145 LTLYRRQRYHLQELCGASNAPRT 168
           L  +R  RYHLQE  G    P T
Sbjct: 85  LAPFRGVRYHLQEFAGQRRDPET 85

[Close]
BLAST of Cucsa.194370 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 33/111 (29.73%), Postives = 50/111 (45.05%), Query Frame = 1 

Query: 51  PTMQNCLCALDDTYIKV-------------NGKVTTNNLGVCDTKGNFVFVLADWEGSAT 110
           P  ++C+  +D  +I V             NG +T N L        F +VLA WEGSA+
Sbjct: 138 PYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSAS 197

Query: 111 DSRIRRDAILIPNRLKVLKGNYAFETFNISTWYYYLCNVGYPNAEGFLTLY 149
           D ++   A+   N+L+V +G             YY+ +  YPN  GF+  Y
Sbjct: 198 DQQVLNAALTRRNKLQVPQGK------------YYIVDNKYPNLPGFIAPY 236

[Close]
BLAST of Cucsa.194370 vs. TAIR10
Match: AT5G28950.1 (AT5G28950.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.7e-06
Identity = 29/86 (33.72%), Postives = 45/86 (52.33%), Query Frame = 1 

Query: 43  LNESGLSFPTMQNCLCALDDTYIKV-------------NGKVTTNNLGVCDTKGNFVFVL 102
           + ES   +P  ++C+ A+DDT+I                G ++ N L  C+    F++VL
Sbjct: 12  IRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVL 71

Query: 103 ADWEGSATDSRIRRDAIL-IPNRLKV 115
           + WEGSA DS++  DA+    NRL V
Sbjct: 72  SGWEGSAHDSKVLNDALTRNSNRLPV 97

[Close]
BLAST of Cucsa.194370 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 105/191 (54.97%), Postives = 118/191 (61.78%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFLHILAQDILNE--------SG--LSF 60
           ++R+CF ILCHLLRT  GL  TKV+DVEEMV MFLHIL  D+ N         SG  +S 
Sbjct: 131 MDRRCFAILCHLLRTIAGLTLTKVVDVEEMVAMFLHILEHDVKNRVIQREFMRSGETISR 190

Query: 61  PTMQNCLCALDDTYIKVN-------------GKVTTNNLGVCDTKGNFVFVLADWEGSAT 120
               NCL ALD TYIKVN             G+V TN LGVCDTKG+FV+VLA W+GSA 
Sbjct: 191 HFNMNCLGALDGTYIKVNVPASDRARYRTCKGEVATNVLGVCDTKGDFVYVLAGWKGSAA 250

Query: 121 DSRIRRDAILIPNRLKVLKGNYAFETFNISTWYYYLCNVGYPNAEGFLTLYRRQRYHLQE 169
           DS I RDA+  PN LKV K             YYYL +VGYPNAEGFL  YR QRYHLQE
Sbjct: 251 DSCILRDALSRPNGLKVPKD------------YYYLVDVGYPNAEGFLAPYRGQRYHLQE 309

[Close]
BLAST of Cucsa.194370 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 107/223 (47.98%), Postives = 121/223 (54.26%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFLHILAQDILNE--------SGLS--- 60
           ++R+CF ILCHLLRT  GL+ T+V+DVEEMV MFLHILA D+ N         SG +   
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSR 60

Query: 61  -------------------------------FPTMQNCLCALDDTYIKVN---------- 120
                                          +   +NCL ALD TYIKVN          
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYR 120

Query: 121 ---GKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFN 169
              G+V TN LG CDTKG+FVFVL  WEGSA DSRI RDAI   N LKV KG        
Sbjct: 121 TRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKG-------- 180

[Close]
BLAST of Cucsa.194370 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-38
Identity = 102/223 (45.74%), Postives = 121/223 (54.26%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFLHILAQDILN--------ESGLS--- 60
           ++R+ F ILCHLLR   GL ST+++DVEEMV MFLH+LA D+ N         SG +   
Sbjct: 15  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQQEFVRSGETVSR 74

Query: 61  -------------------------------FPTMQNCLCALDDTYIKVN---------- 120
                                          +   +NCL ALD TYIKVN          
Sbjct: 75  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFR 134

Query: 121 ---GKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFN 169
              G++ TN LGVCD KG+FV+VLA WEGSA DSRI RDAI   N L+V KG        
Sbjct: 135 TRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG-------- 194

[Close]
BLAST of Cucsa.194370 vs. NCBI nr
Match: gi|659118458|ref|XP_008459130.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 5.7e-38
Identity = 106/223 (47.53%), Postives = 122/223 (54.71%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFL----H-------------------- 60
           ++R+CF ILCHLLRT  GL ST+V+DVEEMV MFL    H                    
Sbjct: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLNILAHDVKNRVIQREFMRLGETISR 60

Query: 61  -----ILAQDILNESGLSFPT-------------MQNCLCALDDTYIKVN---------- 120
                +LA   L++  L  P               +NCL ALD TYIKVN          
Sbjct: 61  HFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTYIKVNVPVSDRARYR 120

Query: 121 ---GKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAILIPNRLKVLKGNYAFETFN 169
              G+V TN LGVCDTKG+F++VLA WEGSA DSRI RDA+  PN LKV KG        
Sbjct: 121 TRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNGLKVPKG-------- 180

[Close]
BLAST of Cucsa.194370 vs. NCBI nr
Match: gi|659074567|ref|XP_008437673.1| (PREDICTED: uncharacterized protein LOC103483014 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 2.2e-34
Identity = 91/178 (51.12%), Postives = 107/178 (60.11%), Query Frame = 1 

Query: 1   INRKCFTILCHLLRTPGGLMSTKVMDVEEMVVMFLHILAQDILNESGLSFPTMQNCLCAL 60
           ++R+ F ILCHLLR  G L ST+ ++VEEMV M LH+L  D+ N          N L AL
Sbjct: 1   MDRRTFAILCHLLRNVG-LSSTESVNVEEMVAMLLHVLVHDVKNH---------NFLEAL 60

Query: 61  DDTYIKVN-------------GKVTTNNLGVCDTKGNFVFVLADWEGSATDSRIRRDAIL 120
           D TYIKVN             GK+ TN LGVCDTKG+FV+VL  W+GS  DS+I RDA  
Sbjct: 61  DGTYIKVNVLVADRPTFRKRKGKIVTNVLGVCDTKGDFVYVLVGWKGSTADSQILRDARA 120

Query: 121 IPNRLKVLKGNYAFETFNISTWYYYLCNVGYPNAEGFLTLYRRQRYHLQELCGASNAP 166
             N L V K   A +T    T YY+LC+ GY NAE FL  YR QRYHLQE  GA N P
Sbjct: 121 QQNELHVSK---AIKTLVFVTNYYHLCDAGYSNAERFLAPYRGQRYHLQEWRGAGNVP 165

The following BLAST results are available for this feature:
BLAST of Cucsa.194370 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME8.0e-3945.74Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME4.0e-3060.16Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME5.0e-0171.43Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5BND9_VITVI1.1e-1935.38Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1[more]
A0A061GDT4_THECC1.8e-1936.79Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1[more]
BLAST of Cucsa.194370 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35695.19.4e-0734.94 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT5G41980.12.1e-0629.73 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT5G28950.12.7e-0633.72 unknown protein[more]
BLAST of Cucsa.194370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126986|ref|XP_008463462.1|1.1e-4154.97PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
gi|659111563|ref|XP_008455792.1|1.6e-4047.98PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|1.1e-3845.74retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659118458|ref|XP_008459130.1|5.7e-3847.53PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659074567|ref|XP_008437673.1|2.2e-3451.12PREDICTED: uncharacterized protein LOC103483014 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.194370.1Cucsa.194370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 61..150
score: 1.
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..157
score: 3.0
NoneNo IPR availablePANTHERPTHR22930:SF27SUBFAMILY NOT NAMEDcoord: 1..157
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.194370Melon (DHL92) v3.6.1cgymedB347
Cucsa.194370Cucumber (Chinese Long) v3cgycucB309
Cucsa.194370Wild cucumber (PI 183967)cgycpiB305
Cucsa.194370Cucumber (Chinese Long) v2cgycuB296
Cucsa.194370Melon (DHL92) v3.5.1cgymeB352