Cucsa.194280 (gene) Cucumber (Gy14) v1

NameCucsa.194280
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRibosomal protein
Locationscaffold01337 : 624530 .. 625041 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTATGTAGTTTCATTCACCGTTAAGATTCTGCTATTTTTCCGAATGAATTTGATTATTGCTTCGGGCGTTTTTATCTAATTTGTGGATTCATAAAGTTTGTTCCTGTTATTTATATCTGCTAGTAATCAAAATATTTAATTGAGGTAGATTTAGAAGTATGTAGATGGTAGTaCTGGAGTTTTTTTAGGGTTAtAGTTTTtttAGGGTTTATGCTTGTTGGAGGCTTTGGTTGCTGATGGGTTTGTTGGCATTTATTGAATGTAGTTTTGTTGCTTTGTATGTACAACAAACTTTAGAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTTGTTGATAGCAGTGAAAAGAAGTGCAAATTCACTGAGACCATTGAACTTCATATTGGACCGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGTTACATATCCCTCGCCCTAAGATGAAGATGTGCATGCTTGGAGATGCTTCACACGTTGAAGAG

mRNA sequence

ATGAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTTGTTGATAGCAGTGAAAAGAAGTGCAAATTCACTGAGACCATTGAACTTCATATTGGACCGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGTTACATATCCCTCGCCCTAAGATGAAGATGTGCATGCTTGGAGATGCTTCACACGTTGAAGAG

Coding sequence (CDS)

ATGAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTTGTTGATAGCAGTGAAAAGAAGTGCAAATTCACTGAGACCATTGAACTTCATATTGGACCGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGTTACATATCCCTCGCCCTAAGATGAAGATGTGCATGCTTGGAGATGCTTCACACGTTGAAGAG

Protein sequence

MSDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMCMLGDASHVEE
BLAST of Cucsa.194280 vs. Swiss-Prot
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.7e-24
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          S+ L+EAIS +  +S EK  KFTET+EL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

BLAST of Cucsa.194280 vs. Swiss-Prot
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.7e-24
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          S+ L+EAIS +  +S EK  KFTET+EL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

BLAST of Cucsa.194280 vs. Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-23
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          S+A+REAI++I   S EKK  F ET+EL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

BLAST of Cucsa.194280 vs. Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-22
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          S+A+REAI++I   S  KK  F ETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

BLAST of Cucsa.194280 vs. Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-22
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCK-FTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKM 61
          S+A+REAISSI     E K + FTETIEL IG KNYDPQKDKRFSGSVKL H+PRPKMK+
Sbjct: 6  SEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKI 65

Query: 62 CMLGDASHVEE 72
          CMLGDA HVEE
Sbjct: 66 CMLGDAQHVEE 76

BLAST of Cucsa.194280 vs. TrEMBL
Match: A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-26
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAISSIF DS+EKK KFTETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDASH+EE
Sbjct: 66 MLGDASHIEE 75

BLAST of Cucsa.194280 vs. TrEMBL
Match: A0A0A0M0B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629190 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-26
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAISSIF DS EKK KFTETIELHIG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 7  SDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 66

Query: 62 MLGDASHVEE 72
          +LGD SHVEE
Sbjct: 67 ILGDVSHVEE 76

BLAST of Cucsa.194280 vs. TrEMBL
Match: A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-26
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAISSIF DS EKK KFTETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDASHVEE
Sbjct: 66 MLGDASHVEE 75

BLAST of Cucsa.194280 vs. TrEMBL
Match: A0A059D9G4_EUCGR (Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-25
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAIS IF D +EKK KFTETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

BLAST of Cucsa.194280 vs. TrEMBL
Match: A0A059DAY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-25
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAIS IF D +EKK KFTETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

BLAST of Cucsa.194280 vs. TAIR10
Match: AT2G27530.1 (AT2G27530.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-24
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          S+A+REAI++I   S EKK  F ET+EL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

BLAST of Cucsa.194280 vs. TAIR10
Match: AT1G08360.1 (AT1G08360.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 106.7 bits (265), Expect = 6.0e-24
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          S+A+REAI++I   S  KK  F ETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

BLAST of Cucsa.194280 vs. TAIR10
Match: AT5G22440.1 (AT5G22440.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 106.7 bits (265), Expect = 6.0e-24
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCK-FTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKM 61
          S+A+REAISSI     E K + FTETIEL IG KNYDPQKDKRFSGSVKL H+PRPKMK+
Sbjct: 6  SEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKI 65

Query: 62 CMLGDASHVEE 72
          CMLGDA HVEE
Sbjct: 66 CMLGDAQHVEE 76

BLAST of Cucsa.194280 vs. NCBI nr
Match: gi|659117410|ref|XP_008458587.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAISSIF DS EKK KFTETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDASHVEE
Sbjct: 66 MLGDASHVEE 75

BLAST of Cucsa.194280 vs. NCBI nr
Match: gi|700211466|gb|KGN66562.1| (hypothetical protein Csa_1G629190 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAISSIF DS EKK KFTETIELHIG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 7  SDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 66

Query: 62 MLGDASHVEE 72
          +LGD SHVEE
Sbjct: 67 ILGDVSHVEE 76

BLAST of Cucsa.194280 vs. NCBI nr
Match: gi|659071695|ref|XP_008461453.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAISSIF DS+EKK KFTETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDASH+EE
Sbjct: 66 MLGDASHIEE 75

BLAST of Cucsa.194280 vs. NCBI nr
Match: gi|449443440|ref|XP_004139485.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAISSIF DS+EKK KFTETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC 65

Query: 62 MLGDASHVEE 72
          MLGDASH+EE
Sbjct: 66 MLGDASHIEE 75

BLAST of Cucsa.194280 vs. NCBI nr
Match: gi|629122880|gb|KCW87370.1| (hypothetical protein EUGRSUZ_B03850 [Eucalyptus grandis])

HSP 1 Score: 120.9 bits (302), Expect = 8.8e-25
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1

Query: 2  SDALREAISSIFVDSSEKKCKFTETIELHIGPKNYDPQKDKRFSGSVKLLHIPRPKMKMC 61
          SDALREAIS IF D +EKK KFTETIEL IG KNYDPQKDKRFSGSVKL HIPRPKMK+C
Sbjct: 6  SDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVC 65

Query: 62 MLGDASHVEE 72
          MLGDA HVEE
Sbjct: 66 MLGDAQHVEE 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
R10A_ORYSJ9.7e-2475.7160S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1[more]
R10A_ORYSI9.7e-2475.7160S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1[more]
R10A2_ARATH3.7e-2375.7160S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1[more]
R10A1_ARATH1.1e-2275.7160S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1[more]
R10A3_ARATH1.1e-2276.0660S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LVE6_CUCSA1.5e-2688.57Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1[more]
A0A0A0M0B3_CUCSA1.5e-2688.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629190 PE=4 SV=1[more]
A0A0A0KEW8_CUCSA1.5e-2690.00Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1[more]
A0A059D9G4_EUCGR6.1e-2585.71Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=3 SV=1[more]
A0A059DAY2_EUCGR6.1e-2585.71Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G27530.12.1e-2475.71 Ribosomal protein L1p/L10e family[more]
AT1G08360.16.0e-2475.71 Ribosomal protein L1p/L10e family[more]
AT5G22440.16.0e-2476.06 Ribosomal protein L1p/L10e family[more]
Match NameE-valueIdentityDescription
gi|659117410|ref|XP_008458587.1|2.1e-2690.00PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo][more]
gi|700211466|gb|KGN66562.1|2.1e-2688.57hypothetical protein Csa_1G629190 [Cucumis sativus][more]
gi|659071695|ref|XP_008461453.1|2.1e-2688.57PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo][more]
gi|449443440|ref|XP_004139485.1|2.1e-2688.57PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus][more]
gi|629122880|gb|KCW87370.1|8.8e-2585.71hypothetical protein EUGRSUZ_B03850 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
IPR023674Ribosomal_L1-like
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.194280.1Cucsa.194280.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwichGENE3DG3DSA:3.30.190.20coord: 4..67
score: 1.9
IPR023674Ribosomal protein L1-likeunknownSSF56808Ribosomal protein L1coord: 5..71
score: 2.49
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 2..71
score: 7.9
NoneNo IPR availablePANTHERPTHR23105:SF55SUBFAMILY NOT NAMEDcoord: 2..71
score: 7.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.194280Melon (DHL92) v3.6.1cgymedB347
Cucsa.194280Cucumber (Chinese Long) v3cgycucB309
Cucsa.194280Wild cucumber (PI 183967)cgycpiB305
Cucsa.194280Cucumber (Chinese Long) v2cgycuB296
Cucsa.194280Melon (DHL92) v3.5.1cgymeB352