Cucsa.177280 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATCATCTTCTGATTAGGAAATTAGTGATACAGATCTTAGTAGTCTTCCATGTGTCTATGACTTTGAGCATGTTTATTAAGTTTTCCATCTTCATTGATTTGGTCCGTCAGGTTCCAGTTAGGCTAGAAAAATTTAATGCAACTTTGGATTAAATCCATATAGAATTTGATGCACAATCACGCTCAACTTTACATCTATGTGCTTGTCCATATGTAAACGTGTTTATCTTATCTGCATGCTCTTTTTACACACAAGGATCTCATTCACTACCGTTGTAATCCTTTCTCACTTTTCTTGCTTATTCACGTACAATAATTTCGGACTAAATCGTGGTTTCATATTTTTACAAACATATAGTGATAATAAAACCACCGTTATTATGAGGTTAGAGTGTGCTTATAAGCTCTTTCATCCTTGCACGTTACGCATCAATTCTCTACTCAGGAAATCTTTGGATTATTTTGACGTTTTGTAGTTCAATGGAAGATTCGCTTCTATATGTGGATGTGGACCTAGAGGATAGTCATATGGGGAATAATGTAAGAAAAATCCGTTATCTTTTACATTCCTTTTCATTTCCCATCAGTTGAAATTGTTTGAGAAAAGTTGTTAGAACTAGAAGATAGGTTCTTTAGCTTCAGTTGCTTTTCCGTGTTCTTTATTTTGTGATCATTGATCGACCTTTACCAAAGATATTTGCTAATTATGCTTATCTTTTCTTTTATTAATTCTCTAGCTAATTATTTCTTAAATGAGACACGAGGAAGTTACTTTTTCTTCTTTTCTTTGTGCCCTTGGTTCAGGAACCATGTTATTGTTTAGTAAATCTGTCTACCATTTGATAAGCATGTCCTCCAATGTTTTGTACCCTTATTTGTTTGAATGTGAGTTATGATAATTGATTATTACACGTTTTGGTTCAGAAGGAAGATAAACAAAGCTGTTGGAATCTTTTGACATTCAATTCTGTCACTTCAGTTATGGATGATGGTGCCAAAAAGCAGTTGAATTTTGAAGATTTATTGCAGCTTCCAAATGAGATGGATCCTTCTTTCTGCCACAACAAGTTGTCATTCTGCTGGAAAGATCAATGTTCCAGAAATTGCTTAAACCCATCATTTTTTTGGGCAATCTGTTGTGCATATGGTTGGTCATATGTTTCTCTTGGTTTATTGAAGGTATTTCCGTATCTTAAAAGTGCCATGTTTTCTCATTTGATAGATAGTAAAGAAAAAAAAAAAAAACAGAAAGTAAGAATTTTATATTTCAAGGTTTTCATTTCACAGAGATGTAGACGTGATTGAAGCTTCTAATTCCTGCTTCTTTTCTTACATATTATGATATTCTTTTTACCCCAATTTTTGTCCTAACCACATTGGCATTAGCAACTTGCAATAACATCCTATTTTACCAAGGGGAAAGCCATTACTTTGTCCATAGCCTGATCTCAGTCATTGACTAGATATATATTTACCTTGTCCAGGTGCTTAATGACTGTATTAATTTTGTTGGACCAATGCTTCTCAATCGGTTGATTCATTATCTTCAGCAAGGTTTTTACATTACATCCGTGATCTTTTCTTTGTCATCAGTTTATGAATATTGATCATATCATATTTCTCCTTATTATTCCCTTCCCCCCTGCTTATTCATGTTATGCCTTCTCCTCATTTTCCTTTAGTTGAAACTTTGATACTTACGCAGATGGTTTTGTACACTTCTATAAGTCTTTCTATTGTTCCACTGACAAAGTGTTGCTTTATATTTTGTTTCTACATTTTAGTGTTTGCTTCATTAGCAAAGTAGGCACAGAAATATGGGGGCACTTAAAACAACAAACTCTTTATTACTCTGAAAGACCCTTGGCTATTGGTGCTTATCCTCATTGTCAATGCATAGTTACTGGTCTACGAAAGGGATTTCTAGAAAAGAATAGATGTCATACGTAAAACATTGATTTGTTCTAATTTATGTTGTGAGAACTTAACCACCATTGCATAAACTATATATTGACAAGATGATATACTGACATTTATCTTTTTTACTTTTATTTAATCAGGCAGTGGCACATCAGATGGCTATGTTCTCGCAATTTCTTTGGGACTCACCTCTATCTTCAAGTAA ATCATCTTCTGATTAGGAAATTAGTGATACAGATCTTAGTAGTCTTCCATGTGTCTATGACTTTGAGCATGTTTATTAAGTTTTCCATCTTCATTGATTTGAATTTGATGCACAATCACGCTCAACTTTACATCTATGTGCTTGTCCATATTTCAATGGAAGATTCGCTTCTATATGTGGATGTGGACCTAGAGGATAGTCATATGGGGAATAATAAGGAAGATAAACAAAGCTGTTGGAATCTTTTGACATTCAATTCTGTCACTTCAGTTATGGATGATGGTGCCAAAAAGCAGTTGAATTTTGAAGATTTATTGCAGCTTCCAAATGAGATGGATCCTTCTTTCTGCCACAACAAGTTGTCATTCTGCTGGAAAGATCAATGTTCCAGAAATTGCTTAAACCCATCATTTTTTTGGGCAATCTGTTGTGCATATGGTTGGTCATATGTTTCTCTTGGTTTATTGAAGGTGCTTAATGACTGTATTAATTTTGTTGGACCAATGCTTCTCAATCGGTTGATTCATTATCTTCAGCAAGGCAGTGGCACATCAGATGGCTATGTTCTCGCAATTTCTTTGGGACTCACCTCTATCTTCAAGTAA ATCATCTTCTGATTAGGAAATTAGTGATACAGATCTTAGTAGTCTTCCATGTGTCTATGACTTTGAGCATGTTTATTAAGTTTTCCATCTTCATTGATTTGAATTTGATGCACAATCACGCTCAACTTTACATCTATGTGCTTGTCCATATTTCAATGGAAGATTCGCTTCTATATGTGGATGTGGACCTAGAGGATAGTCATATGGGGAATAATAAGGAAGATAAACAAAGCTGTTGGAATCTTTTGACATTCAATTCTGTCACTTCAGTTATGGATGATGGTGCCAAAAAGCAGTTGAATTTTGAAGATTTATTGCAGCTTCCAAATGAGATGGATCCTTCTTTCTGCCACAACAAGTTGTCATTCTGCTGGAAAGATCAATGTTCCAGAAATTGCTTAAACCCATCATTTTTTTGGGCAATCTGTTGTGCATATGGTTGGTCATATGTTTCTCTTGGTTTATTGAAGGTGCTTAATGACTGTATTAATTTTGTTGGACCAATGCTTCTCAATCGGTTGATTCATTATCTTCAGCAAGGCAGTGGCACATCAGATGGCTATGTTCTCGCAATTTCTTTGGGACTCACCTCTATCTTCAAGTAA HLLIRKLVIQILVVFHVSMTLSMFIKFSIFIDLNLMHNHAQLYIYVLVHISMEDSLLYVDVDLEDSHMGNNKEDKQSCWNLLTFNSVTSVMDDGAKKQLNFEDLLQLPNEMDPSFCHNKLSFCWKDQCSRNCLNPSFFWAICCAYGWSYVSLGLLKVLNDCINFVGPMLLNRLIHYLQQGSGTSDGYVLAISLGLTSIFK*
BLAST of Cucsa.177280 vs. Swiss-Prot
Match: AB13C_ARATH (ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3) HSP 1 Score: 112.5 bits (280), Expect = 5.5e-24 Identity = 60/125 (48.00%), Postives = 71/125 (56.80%), Query Frame = 1
BLAST of Cucsa.177280 vs. Swiss-Prot
Match: ABCC8_DICDI (ABC transporter C family member 8 OS=Dictyostelium discoideum GN=abcC8 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.6e-10 Identity = 50/174 (28.74%), Postives = 86/174 (49.43%), Query Frame = 1
BLAST of Cucsa.177280 vs. TrEMBL
Match: A0A0A0LF13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710830 PE=4 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 1.9e-84 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Cucsa.177280 vs. TrEMBL
Match: W9RHK2_9ROSA (ABC transporter C family member 13 OS=Morus notabilis GN=L484_018058 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 2.8e-43 Identity = 91/149 (61.07%), Postives = 109/149 (73.15%), Query Frame = 1
BLAST of Cucsa.177280 vs. TrEMBL
Match: A0A0J8BI00_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223000 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 8.3e-43 Identity = 85/139 (61.15%), Postives = 104/139 (74.82%), Query Frame = 1
BLAST of Cucsa.177280 vs. TrEMBL
Match: A0A067DM07_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0004971mg PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.4e-42 Identity = 93/151 (61.59%), Postives = 113/151 (74.83%), Query Frame = 1
BLAST of Cucsa.177280 vs. TrEMBL
Match: A0A067DZH8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0004971mg PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.4e-42 Identity = 93/151 (61.59%), Postives = 113/151 (74.83%), Query Frame = 1
BLAST of Cucsa.177280 vs. TAIR10
Match: AT2G07680.1 (AT2G07680.1 multidrug resistance-associated protein 11) HSP 1 Score: 112.5 bits (280), Expect = 3.1e-25 Identity = 60/125 (48.00%), Postives = 70/125 (56.00%), Query Frame = 1
BLAST of Cucsa.177280 vs. NCBI nr
Match: gi|778682957|ref|XP_011651817.1| (PREDICTED: ABC transporter C family member 13 isoform X4 [Cucumis sativus]) HSP 1 Score: 320.1 bits (819), Expect = 2.8e-84 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Cucsa.177280 vs. NCBI nr
Match: gi|700203523|gb|KGN58656.1| (hypothetical protein Csa_3G710830 [Cucumis sativus]) HSP 1 Score: 320.1 bits (819), Expect = 2.8e-84 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Cucsa.177280 vs. NCBI nr
Match: gi|778682954|ref|XP_011651816.1| (PREDICTED: ABC transporter C family member 13 isoform X3 [Cucumis sativus]) HSP 1 Score: 320.1 bits (819), Expect = 2.8e-84 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Cucsa.177280 vs. NCBI nr
Match: gi|778682948|ref|XP_011651814.1| (PREDICTED: ABC transporter C family member 13 isoform X1 [Cucumis sativus]) HSP 1 Score: 320.1 bits (819), Expect = 2.8e-84 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
BLAST of Cucsa.177280 vs. NCBI nr
Match: gi|778682960|ref|XP_011651818.1| (PREDICTED: ABC transporter C family member 13 isoform X5 [Cucumis sativus]) HSP 1 Score: 320.1 bits (819), Expect = 2.8e-84 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|