Cucsa.159590 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTCGCACCACAAATCAGTGTGTTTCGTCAGAAGGAAGTCAATACTCGATTGAGAGATCAACTCTATAGTCTATACTCTCGTTTTAGAATACAGATTACATCACTTGTACGATAATCTTCTGCTTCTGATTGCGTAATATCAAACCTCCCTTTGATTTCCGACCACCGCCTTCCACTTCTTTAGGGTCCACCGTCGTCTCCAGAAAAGAAAAAAAaTAGGAACAAAGTTGCAGTAAATCCGCCGTTGAAAATTCAGAAGAGAGAGAGAGGGTGATTTTGTAAGTTAATAGATATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGGTAACCTATAATTCGACATCTGTAATTGATGTTTATGTAGCGAAGTAACTAGACTTGTTTTCTTAGTAGGTTTACTTGTTTTCTTGGGCTTTAAATCTTGTGAATTTTGTTGTTTCGAATTGTGACTTTGATCGATGCTTGAATGAATGTGGAAGCAGAACCCTAGATTTTGATTCGTTGTGATTTTGATTCCTTGGGAGGGGCAGCTTGATTTTATAATATGTATTGCCAAAGTTCTTTGACAAATTTTGTTGTGGTAATGTCTTATATCTGTTGTTTGGCCTATTGAATGAGAAGCATAGGGCAGTGAGACtCAGGTTCTCGAAATGCCCCCAAACCATGTTAATCTCTTTATTAGTCTCTATTCTTTACTTGTCGATTTTGTTTTTGTCATAACATTCGTTCTAGATAAGGGGAATGATATTAGTTCGTTTATGTAAGTTCTGAGCTTTGGCCTCAAATTGTGCAAGACGATTGAAGTCCTATTTTGGATCATTTGTTATGAAACTGAAATATAGTTATGAATGTTGTAAAAGATATGACCTTCCTGGATAATGTCTCCATTGGACTTTATAAGTCTTTGTTAGACCATACATACTCATATGTGCACATACATGCAGACATGTATATACACATATATAAATATAGGAAGCAAATAATTTATTTATACATATCCAGCAATAATGAGTGTTTCGTGTGGCTCATTGTTTATCCTTTTTTTTTtGTCTAACTACTGTATTCCCTTGCATGCTTTAAAATGAACCTCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTGAGCTACATGATCCTTATCTGTTGTCAATTCTTTCTTTGACTATGCTGTCACCCTGAATGTAATATGTGAATATTTCTGCCATCTGGAAATGCTTCTTCCTCTATTCTGGATATTGTTTCCTCTGTTATGAACACCAATTTGCACAGATTTATTTTTATTTTAGTGTAATTACATTTGTGTATTTTTTTtACATAAGGAACGAGGATGTTCATTGAAATGAAAAGGGACAGAACTTAGGTGAGGTTTCCCTTTCACCCTTTGCTAAGGAGGTTATAAAAAATCTCCCAATTTTGAACTTATCAAGAATCGGCTGTGGTTACTTATGAAGGATAGACACTTCATGTTGTGCAGAGAATCGGTATCAGAAACGTTCTAATACTAATATGTCCAAATATATATGAGATATGTGGGAGATGTGTGATTCCGTGATTCCCAAGCCATATGCCTCAAGTTGAGTATGGGAGAGTGATCAATTTCCACTTATCCAAATGGGACTGCCTTGAGTGAAATTATCTTTTCCTAAGTGAAATCTCTCTCACTTTTTGGAAACGTTGCCTGGGTTTTTAAATAGAGAGAAATAATAGGTTGGGTTGATGGAGACAATCACTAAACTGAAATATTTAATCTACAGTCCAAACGTTGCCTCACATACGAGAATATTAGTTTGGGTTGATGGACATGACCACCCCCTTAAGCAAAAAATTTAATCTACTGTCCTTTGAGGTTGGGTTATTATTCAAATTTGCAATTTTATTAGTACCTCGTCCAAGAAGGCTCCTGGGAGAGTGCAAGATTTTATATTTTTATCTGTAGGAGGCTAAGGAAATATTAGGGCAATAAATAATACTCACAATCATAGAAGGCAAAAGTAATATTGTTGTCAGTATAATGAATTTGTGAAATATGGATCTGTTGATCATCTTCCCCAAAGCGTTCAACAGGATCTTAAAACATTGGCATGGCTGCAGAGTTAACAACTAAAGTGGACACTAGATAGGAAGCGGGAGAGGGTTCCTGGTGACAAATTCCTCTTGAAGTGTGGATCTTGCTTTCTAGGGCCCTTGTGGACTAGTAGTTGACCGAAGATAGCTATCACCTGATCTAACTTCTCCCTTTGTTACCAAATCCTTTTTTGTTTATGATAGCATTCAATCAGTTCCTTTCACTCTTTTTTTATTAACCTTGATCAAGTTTTAGAACAAAACCTATTTTTTCCATTCACCTCTTATTTATAGTAACATGGATTTTCATCAGAGAGAATCTTCCAATAAAGGCTATTTGGAACGCGTGAAGTGAATCAATCTATGTTTTTTTAGCTTTTTGTTGCAAGTTTTATGTTTCTTTTGATGCAGTTTATATTCTTTGTGGCATGTTCCGATTATGGAAAGCTTTTTGTAATCTCCAGAACAACTTTTCTCAACCTCTTAGTTGGACCCCCTTCCTGTGGAGGGCCCTTTTTTTtAATCCACTATTTCCATAAATGACTTCCACCTGGAGAAGTCTTGAGTTCTTGTCTCCCCTTTTCAGCTTGTCAGCCCATAAATTTATAAACCACAAAAAATTATAATTGTTGTTCTGCATATTTCTTGCCGTTCTAATAACCCAACAAGAAAATTTGTTTGTGGAATTAAGTATTGTTTTTGTTTAACTTCTTCCTTCTTTTGAGTTCAGTAATGCTAGGGTGGACATTTGAACATCTGTTGAGGATAAAGCCTCTACCAATTGAGTTATGCTTGGATTTGTCCTGCAATTTTAGTTTCTTGACTTGATCTACATTTGAAACTATGAACTAATTTAACAAACATCATTAGCTCCTGTTTTCAACTTTATTTTTTTtAATTAGGTGGGGAGGGTTTCCTCTCTTGAGAACTATTTCCGTCAAGTATGGATGAAGATGCATGTATCATAATCAGCTAATGTAGTCGGTGTTTGTTATAGATTTTGTCTCTTTGTAAATTCTTTTGTAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTACATCATCAAGAGCCCTTTTACTTTTATCTAATACTTTACTTTCCTTAAGTCCCACTACTCCATGTTTGCAATTGATTTTACATTTCACAATTTTCTCATGTATTGATAAGGTGATAGACAATGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGTATATCTTTTCTCACCGTTTTCTTTCATCATTCTTGAACTCTTGTGGCAGTATGATTCTATAATCAATCATTTATTGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCTGCTGTATGTCTACTGATCGCTTCCTCATTTATCAACGATTTTTGAAAATATTACTCTTCTTTTCTGTTTCTCTGAAACTGTTGCTAGAGAAGATATTGAATGAGAAGATATAATTTATAGAACCCTCCCGACATACACAACACTAGACACTATACAGCCTTCCCTTCTCTATAACTCTAAAGTTCATCAGAGACCCATACACCCTAGAGATCATAAATTGTTTTGGCTGTCTGTTGCCCGTGTACATAATAATTATTTTTGGTTTGATTTATGTTCCTTATCTTTGCAGCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACACCGGTGGAGAGTAGGTTAGTTTTTGACTGTATCATTATATAGATTCCCTTTTCTTGGGGTAAGGAAATGGTCAGAAATAAATCTGCTAATTTAAGAGGGGAAAAAaTATTTTGCTTTTCCTTTAGTTATATTTTCTTGGGAGGGGAGAGATGGGAGGTTGAAAGAAGTTGGTTTAAATTAATTGCTATAGGTAGCTTTATACTGAAGTAAAACCAAATATGAAATGAAAGTTGCGGGGAGGGAGGGAGTTTTTCTTATGGCAATTACGTGCAAGATCGTCGGAAGTTACAAGATGAATTTGTATAATGAATTTTATGACCATACGAAAATGATGGAAAACAGATTT GGTCGCACCACAAATCAGTGTGTTTCGTCAGAAGGAAGTCAATACTCGATTGAGAGATCAACTCTATAGTCTATACTCTCGTTTTAGAATACAGATTACATCACTTGTACGATAATCTTCTGCTTCTGATTGCGTAATATCAAACCTCCCTTTGATTTCCGACCACCGCCTTCCACTTCTTTAGGGTCCACCGTCGTCTCCAGAAAAGAAAAAAAATAGGAACAAAGTTGCAGTAAATCCGCCGTTGAAAATTCAGAAGAGAGAGAGAGGGTGATTTTGTAAGTTAATAGATATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAATGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGTATATCTTTTCTCACCGTTTTCTTTCATCATTCTTGAACTCTTGTGGCAGTATGATTCTATAATCAATCATTTATTGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCTGCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACACCGGTGGAGAGTAGGTTAGTTTTTGACTGTATCATTATATAGATTCCCTTTTCTTGGGGTAAGGAAATGGTCAGAAATAAATCTGCTAATTTAAGAGGGGAAAAAATATTTTGCTTTTCCTTTAGTTATATTTTCTTGGGAGGGGAGAGATGGGAGGTTGAAAGAAGTTGGTTTAAATTAATTGCTATAGGTAGCTTTATACTGAAGTAAAACCAAATATGAAATGAAAGTTGCGGGGAGGGAGGGAGTTTTTCTTATGGCAATTACGTGCAAGATCGTCGGAAGTTACAAGATGAATTTGTATAATGAATTTTATGACCATACGAAAATGATGGAAAACAGATTT ATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAATGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGTATATCTTTTCTCACCGTTTTCTTTCATCATTCTTGAACTCTTGTGGCAGTATGATTCTATAATCAATCATTTATTGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCTGCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACACCGGTGGAGAGTAG MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE*
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_SCHPO (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfg2 PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.4e-20 Identity = 80/286 (27.97%), Postives = 127/286 (44.41%), Query Frame = 1
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_RAT (General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=1 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.1e-16 Identity = 69/274 (25.18%), Postives = 119/274 (43.43%), Query Frame = 1
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_BOVIN (General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.1e-16 Identity = 69/274 (25.18%), Postives = 119/274 (43.43%), Query Frame = 1
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_DICDI (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum GN=gtf2f2 PE=3 SV=2) HSP 1 Score: 85.9 bits (211), Expect = 7.9e-16 Identity = 69/265 (26.04%), Postives = 114/265 (43.02%), Query Frame = 1
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_MOUSE (General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.0e-15 Identity = 68/274 (24.82%), Postives = 118/274 (43.07%), Query Frame = 1
BLAST of Cucsa.159590 vs. TrEMBL
Match: A0A0A0LRL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G363560 PE=4 SV=1) HSP 1 Score: 512.7 bits (1319), Expect = 2.9e-142 Identity = 260/287 (90.59%), Postives = 260/287 (90.59%), Query Frame = 1
BLAST of Cucsa.159590 vs. TrEMBL
Match: E6NU66_JATCU (JHL18I08.10 protein OS=Jatropha curcas GN=JHL18I08.10 PE=4 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 7.0e-120 Identity = 218/289 (75.43%), Postives = 243/289 (84.08%), Query Frame = 1
BLAST of Cucsa.159590 vs. TrEMBL
Match: A0A061FCW1_THECC (JHL18I08.10 protein isoform 2 OS=Theobroma cacao GN=TCM_034139 PE=4 SV=1) HSP 1 Score: 433.0 bits (1112), Expect = 2.9e-118 Identity = 216/289 (74.74%), Postives = 242/289 (83.74%), Query Frame = 1
BLAST of Cucsa.159590 vs. TrEMBL
Match: E0CPG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13370 PE=4 SV=1) HSP 1 Score: 433.0 bits (1112), Expect = 2.9e-118 Identity = 215/287 (74.91%), Postives = 240/287 (83.62%), Query Frame = 1
BLAST of Cucsa.159590 vs. TrEMBL
Match: B9GRH3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03040g PE=4 SV=1) HSP 1 Score: 431.0 bits (1107), Expect = 1.1e-117 Identity = 217/292 (74.32%), Postives = 241/292 (82.53%), Query Frame = 1
BLAST of Cucsa.159590 vs. TAIR10
Match: AT1G75510.1 (AT1G75510.1 Transcription initiation factor IIF, beta subunit) HSP 1 Score: 344.7 bits (883), Expect = 5.3e-95 Identity = 183/297 (61.62%), Postives = 214/297 (72.05%), Query Frame = 1
BLAST of Cucsa.159590 vs. TAIR10
Match: AT3G52270.1 (AT3G52270.1 Transcription initiation factor IIF, beta subunit) HSP 1 Score: 285.0 bits (728), Expect = 5.0e-77 Identity = 148/278 (53.24%), Postives = 192/278 (69.06%), Query Frame = 1
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|449469921|ref|XP_004152667.1| (PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis sativus]) HSP 1 Score: 512.7 bits (1319), Expect = 4.2e-142 Identity = 260/287 (90.59%), Postives = 260/287 (90.59%), Query Frame = 1
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|659088035|ref|XP_008444765.1| (PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]) HSP 1 Score: 509.6 bits (1311), Expect = 3.6e-141 Identity = 258/287 (89.90%), Postives = 259/287 (90.24%), Query Frame = 1
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|802595915|ref|XP_012071957.1| (PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]) HSP 1 Score: 438.3 bits (1126), Expect = 1.0e-119 Identity = 218/289 (75.43%), Postives = 243/289 (84.08%), Query Frame = 1
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|1009118711|ref|XP_015876002.1| (PREDICTED: transcription initiation factor IIF subunit beta-like [Ziziphus jujuba]) HSP 1 Score: 436.8 bits (1122), Expect = 2.9e-119 Identity = 218/288 (75.69%), Postives = 240/288 (83.33%), Query Frame = 1
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|590593791|ref|XP_007017671.1| (JHL18I08.10 protein isoform 2 [Theobroma cacao]) HSP 1 Score: 433.0 bits (1112), Expect = 4.2e-118 Identity = 216/289 (74.74%), Postives = 242/289 (83.74%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |