Cucsa.123730 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGATCCCAAAACCCTACCCGCATTCGAATCCTCTCATATCCGTTTCTTCTTTCATCCACCATCACTGTACCAAACTTGGAGCCGAGCTTTCCAATCGTCTCGAAGACACCAAACGCTTCGCCGGAACTCTCGCCAGAAGATGGCCGGCCCAGGCGAATTGGCGATCATTTCCTACACCTGCTTTCGCATCCCTTGCGCGCCACACGCATGCCTTGGCTGCCACTCTTAGCCCCGACCAAGTGGCGAAGTCCCTCGTCGGCACGGCGGTATACACTGTTAGCAATTCAAATAATGAGTTTGTGCTCATTTCTGATCCCAATGGTGCCAAGTCAATTGGGTTGCTGTGCTTTCGCAAGGAAGATGCCGAGACCTTTTTGGCTCAGGTTTGTTTTGCCCCTGGTTTTCCTCCCATTTGTGTAGAGTGAAATGATAATGAAGAAGTGAGGAAAACTTGTCGCAATCTATTTTGTGCTTCCCCTATTTAGTGGAATTTGTGTTTGATGTTTTCGATAATTTAATGAACTAGAAGTAGGTTTACCATTCTAATTCTTTTGTTCAAATCTGATGTTTTTATTGCAATATGATATCTGATTATAGTGAATTTCAGGTCCGATCGAGGAAAAGAGAACTAAGAAGTAATGCCAAGGTTGTACCTATTACCCTTGACCAGGTACCTTACTTGTATTATCAAATTTTTACTTCTTGAGTACCGAACTTTTTCCCTGCTGCAGTTATTTTGTTTTCCCCACTTAACGTTCAACCGTTTAGTGGAATTCCATAGTGAAGGTTAGTGTGGCCGGTAGGTAACTGCATTTATAGGCTTGTGCTAGTACTCCTGATCAATGATATGACAATGAGAGCCGAGAGGATCATTTACCTGGTGAGATAACTCCGTTTTATTTTtAGTCATCTGGCTGGTGAAAATTTTCAAATCTAAGGCCTATTAATTTGAATGTATCTAAATTTGTTGGGTTGGAAGATTTCAAATAAATAGGTTGAACTTATAAAACACAGAATTTAAATATGATGGTGAAGTGAAGTATCTGTTTTGCCTTTTCTTTTTCTTCCTTTATTAGGGGGGCGTGGGGCAGGGTTTGAAATGTAATAATTTTGTGAGAAGGTACTCAATTAGAATTCAACTTGATTTTTCTATTGCCCGTGTATTATCTATTGCCAATAACCGGGACCTCCTTCAGTTTCTCTCTTTCTTCTGTACTTCAGTAGATTTATTTGTTTCTGTTCGTTTTTtATGATTCACAGGTATATTTGTTGAAAGTTGAAGGTATTGCATTCCGCTTTTTGCCAGATCCTATTCAGCTTAAGAATGCGTTAGAGGCAA ATGGAGATCCCAAAACCCTACCCGCATTCGAATCCTCTCATATCCGTTTCTTCTTTCATCCACCATCACTGTACCAAACTTGGAGCCGAGCTTTCCAATCGTCTCGAAGACACCAAACGCTTCGCCGGAACTCTCGCCAGAAGATGGCCGGCCCAGGCGAATTGGCGATCATTTCCTACACCTGCTTTCGCATCCCTTGCGCGCCACACGCATGCCTTGGCTGCCACTCTTAGCCCCGACCAAGTGGCGAAGTCCCTCGTCGGCACGGCGGTATACACTGTTAGCAATTCAAATAATGAGTTTGTGCTCATTTCTGATCCCAATGGTGCCAAGTCAATTGGGTTGCTGTGCTTTCGCAAGGAAGATGCCGAGACCTTTTTGGCTCAGGTCCGATCGAGGAAAAGAGAACTAAGAAGTAATGCCAAGGTTGTACCTATTACCCTTGACCAGGTATATTTGTTGAAAGTTGAAGGTATTGCATTCCGCTTTTTGCCAGATCCTATTCAGCTTAAGAATGCGTTAGAGGCAA ATGGAGATCCCAAAACCCTACCCGCATTCGAATCCTCTCATATCCGTTTCTTCTTTCATCCACCATCACTGTACCAAACTTGGAGCCGAGCTTTCCAATCGTCTCGAAGACACCAAACGCTTCGCCGGAACTCTCGCCAGAAGATGGCCGGCCCAGGCGAATTGGCGATCATTTCCTACACCTGCTTTCGCATCCCTTGCGCGCCACACGCATGCCTTGGCTGCCACTCTTAGCCCCGACCAAGTGGCGAAGTCCCTCGTCGGCACGGCGGTATACACTGTTAGCAATTCAAATAATGAGTTTGTGCTCATTTCTGATCCCAATGGTGCCAAGTCAATTGGGTTGCTGTGCTTTCGCAAGGAAGATGCCGAGACCTTTTTGGCTCAGGTCCGATCGAGGAAAAGAGAACTAAGAAGTAATGCCAAGGTTGTACCTATTACCCTTGACCAGGTATATTTGTTGAAAGTTGAAGGTATTGCATTCCGCTTTTTGCCAGATCCTATTCAGCTTAAGAATGCGTTAGAGGCAA MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPTPAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRKEDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALEAX
BLAST of Cucsa.123730 vs. Swiss-Prot
Match: TIC22_ARATH (Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.2e-54 Identity = 114/167 (68.26%), Postives = 132/167 (79.04%), Query Frame = 1
BLAST of Cucsa.123730 vs. Swiss-Prot
Match: TIC22_PEA (Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 2.0e-49 Identity = 108/165 (65.45%), Postives = 125/165 (75.76%), Query Frame = 1
BLAST of Cucsa.123730 vs. Swiss-Prot
Match: TI22L_ARATH (Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 4.0e-18 Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 1
BLAST of Cucsa.123730 vs. TrEMBL
Match: A0A0A0L097_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639760 PE=4 SV=1) HSP 1 Score: 351.3 bits (900), Expect = 6.9e-94 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of Cucsa.123730 vs. TrEMBL
Match: M5XL62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009744mg PE=4 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 2.4e-62 Identity = 134/178 (75.28%), Postives = 147/178 (82.58%), Query Frame = 1
BLAST of Cucsa.123730 vs. TrEMBL
Match: F6GZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10590 PE=4 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 6.8e-57 Identity = 123/181 (67.96%), Postives = 141/181 (77.90%), Query Frame = 1
BLAST of Cucsa.123730 vs. TrEMBL
Match: B9GNW7_POPTR (Chloroplast inner membrane import protein Tic22 OS=Populus trichocarpa GN=POPTR_0002s12830g PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 3.4e-56 Identity = 119/172 (69.19%), Postives = 135/172 (78.49%), Query Frame = 1
BLAST of Cucsa.123730 vs. TrEMBL
Match: V4T4B1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002150mg PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55 Identity = 120/175 (68.57%), Postives = 141/175 (80.57%), Query Frame = 1
BLAST of Cucsa.123730 vs. TAIR10
Match: AT4G33350.1 (AT4G33350.1 Tic22-like family protein) HSP 1 Score: 214.2 bits (544), Expect = 6.7e-56 Identity = 114/167 (68.26%), Postives = 132/167 (79.04%), Query Frame = 1
BLAST of Cucsa.123730 vs. TAIR10
Match: AT3G23710.1 (AT3G23710.1 Tic22-like family protein) HSP 1 Score: 92.8 bits (229), Expect = 2.3e-19 Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 1
BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|449446989|ref|XP_004141252.1| (PREDICTED: protein TIC 22, chloroplastic [Cucumis sativus]) HSP 1 Score: 351.3 bits (900), Expect = 1.0e-93 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|659103247|ref|XP_008452542.1| (PREDICTED: protein TIC 22, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 342.0 bits (876), Expect = 6.0e-91 Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 1
BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|659103244|ref|XP_008452540.1| (PREDICTED: protein TIC 22, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 342.0 bits (876), Expect = 6.0e-91 Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 1
BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|1009134167|ref|XP_015884297.1| (PREDICTED: protein TIC 22, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 264.6 bits (675), Expect = 1.2e-67 Identity = 135/178 (75.84%), Postives = 148/178 (83.15%), Query Frame = 1
BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|694450570|ref|XP_009350661.1| (PREDICTED: protein TIC 22, chloroplastic-like [Pyrus x bretschneideri]) HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65 Identity = 138/178 (77.53%), Postives = 150/178 (84.27%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |