Cucsa.118310 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATTACTACCTATGTGATGTTGGGTATCCAAACGTTGAGGGTTTATTGGCTCCATACAGAGGAGAAAGATATCATCTTTTAGAGTGGCATGGTGGAGGTAATGTACCAACAACAGCAAGGGAGTTCTTCAATATGAAACATTCTTCTACTCGAAATGTCATCGAAAGAGCGCTCAGGTTGTTGAACGACCGTTGGGTAATCCTTAGAGAGTCATACTACCCAGTCCAAATCCAATGTCGCAATAATGGCTTTGTTGTCTCCTACACAATCTTATAAACAGGGAGATGACTAAAACAATGAAGTCCCCAACGATTTGGATGAAGGTGATTCCACCTGCGCTACAACTGGGGGTGACAAGATTAATTATATCGAGACCTCAAACGAATGGAGTCAATGGAGGGATGAATTGGCTCATTAGATGTTCAATGATTGAGAGTTACATAATCAGTAGAACTCTTATG atgtattactacctatgtgatgttgggtatccaaacgttgagggtttattggctccatacagaggagaaagatatcatcttttagagtggcatggtggaggtaatgtaccaacaacagcaagggagttcttcaatatgaaacattcttctactcgaaatgtcatcgaaagagcgctcaggttgttgaacgaccgttgggtaatccttagagagtcatactacccagtccaaatccaatggatgaattggctcattagatgttcaatgattgagagttacataatcagtagaACTCTTATG ATGTATTACTACCTATGTGATGTTGGGTATCCAAACGTTGAGGGTTTATTGGCTCCATACAGAGGAGAAAGATATCATCTTTTAGAGTGGCATGGTGGAGGTAATGTACCAACAACAGCAAGGGAGTTCTTCAATATGAAACATTCTTCTACTCGAAATGTCATCGAAAGAGCGCTCAGGTTGTTGAACGACCGTTGGGTAATCCTTAGAGAGTCATACTACCCAGTCCAAATCCAATGGATGAATTGGCTCATTAGATGTTCAATGATTGAGAGTTACATAATCAGTAGAACTCTTATG MYYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRLLNDRWVILRESYYPVQIQWMNWLIRCSMIESYIISRTLM
BLAST of Cucsa.118310 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 5.4e-27 Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1
BLAST of Cucsa.118310 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.3e-25 Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1
BLAST of Cucsa.118310 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19 Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 1
BLAST of Cucsa.118310 vs. TrEMBL
Match: S8CZP1_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_02213 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 2.4e-19 Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 1
BLAST of Cucsa.118310 vs. TrEMBL
Match: S8DIU0_9LAMI (Retrotransposon protein (Fragment) OS=Genlisea aurea GN=M569_12006 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 9.2e-19 Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
BLAST of Cucsa.118310 vs. TAIR10
Match: AT5G35695.1 (AT5G35695.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)) HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11 Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1
BLAST of Cucsa.118310 vs. TAIR10
Match: AT1G43722.1 (AT1G43722.1 unknown protein) HSP 1 Score: 60.5 bits (145), Expect = 7.0e-10 Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo]) HSP 1 Score: 133.3 bits (334), Expect = 2.4e-28 Identity = 63/94 (67.02%), Postives = 70/94 (74.47%), Query Frame = 1
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 128.3 bits (321), Expect = 7.7e-27 Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|659123898|ref|XP_008461892.1| (PREDICTED: uncharacterized protein LOC103500386 [Cucumis melo]) HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26 Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 1
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 122.9 bits (307), Expect = 3.3e-25 Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|659131061|ref|XP_008465488.1| (PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo]) HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24 Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |