Cucsa.105190 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGTTCATCTCTTCCCTTCAGCGGGTTTAAATTCCACCGCCGTGGGGTAATTCCGACCGCCGTCTGATAAATAACCTAGCCGAATAAATTTCCTTTAAAGGTTCTTGTATTCTTCTTTTGTTTGATTGAGGCGATAAACTTGAGAAATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGAAAACGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTATTCATTTCTCCTCCATCGATCCTAATATAATTTTAGGTTTTATGCTTATTTACGTTGGACGATAACATGTTTGATTGTTTGATTAATTAGTTTCGAGTTACTGCTTCTGGATCCACTTGTAATTTAGTAAAGAATTGAAAATCGTTATTGCTTCTAGGAATGTGATGTGATTAGTAGGCTGTTGAGTTACTTCTAATACTAGATTTTTCTATTTGAATTTTGTATGGTTCTATCGAACATTTCTGTTGTTTAAAGTGTGTAAATTTCTTGCAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGGTATTTTTGCTAATAGTTGTTTTTTCTAAAATTTAGAACTGATATCTCCCTTTCTATCCACGACACATCCAAGTATTCTGAATATGATTGTGGAGACTATAATAGGCTACCAGGGAAAAGGTGTACAAAATCTGTATTGGCTTTGTATGCTTCCCGTAGTTCTTGGGTTACCTTTTTTACTTCTTCTTTACTCACTATATGTGGGTGGGGAAATCAACCTCGAACCTGAAAATGAATTATTTTTTtGGTTACTTTTTTGTGTTCCTTTCGAAATTTATTAGATTTATATGCTTTCCTGAAATCTGAATTCTGATTTGTATTCTCTCCTTATTTCCCTTAAATGAATTATTTCTTGCTGGTATTTCGTGAGTGATTTCGTGCAGAGAGCTTTTATGCTACAATTTTTTCTAATAGCTTCCAAAACGATTCTTTTGAGTCAAGTACTTGTGGGGAAAGTAGAGCTAGGGGACCTTTTGTCTGCTCTGCTAAGGAAATTTGTTTATGTCTGGTTACAAGGGAACTAGCTCTGGCTCCTTGACCTTTGAAGCTTTTGCTGCTCTTTTAAGAGTTTTGTCATAATTCTGTATAACAAGACATGACACAATCCTAAACCCTAAGCCCCAAAATCCTATAGGCATTTCTTAGTTGGATTCCCTTCCTGTAGAGGGAGTTCGTACGTGTATTTTTCCAATATTTTCTCAATGAAGGTTACTTTTTATTAAAAAGAAAAAGAAGAAAAAGAAAGTTTTGACATAATACTGTGTAACAAGGCATTGAAATGTCAAGATTGACGGTTCCTTACAGCTCACAATTTCAATCCCATGCAACATTTTGATATCTTTTTTTtGTTCTTGTACGTTTCATGTTTAGAAGATTAACATTCATAAGTATGTCATTAATTGATTTCATTGTAAGTTGGCTCACAGGCCTATTTAGAGGTCAACTTGAACAATTGAAAATAACCAACCGTTACTACTATTCAACTGTAACTTGTGTCAATGTTACTACGAATTTTTCTTGGAGGCAAAACCGTGAAATATATGGATGGTTTGTGCAAAATATATGTTTTTCAGTGCCTCCTACTTAGTTTGCTGTTTCTCTTCTGTTGTGTGTATTTTACACCGTGCATCATTCATTGGTATTACACCCTCTAGAGATTTCTTGTGTTGCACCATTTTTTATGGAACTTGGTTATTGTATTATGATAATATAGCCTGTCATGTTAAGATAAATATGGCAGGCTGCTTGTTCATGAGTTCTTGAAACTTTCATTAATTTTGTTATTTTAACATGTTTGGCATAATCACATTAACTATAGATATTCAACTTAAAAGGATTGGATGTCAATTGTGTGTTGTCAAACTGCATTTTAGATTTGCGCAAGCGTATTGAATTCCAGATAAAGATATAATTTGTTCTTTGTTTGCAGCTCAAACCTTATGTATCTCAATGCCCCATAGAACTTAAGACCAGTGACAACAATGAATCAGCTAAATCATAAGCAAAGAGGTATAACATCTTGTAACGCTCTGTGTTCTTTTCCCCTCAAATTAATTTGATTACAGTGGTATTCGATTCAAACCCTAAATTTTCTTTTACTTCAGATTTGAGTAATTATTAAGGCAAGTGAGCCTTAATTAGCTTAAATTAGAATGTTCTTTTAGGTAAACAAATTTAGTAGTTTAATTTTGAACTCTCTTCTGCCGAGTAGGTTTGTACTGACCCATCAACATATATTGCAGCATACGCGAATGATGTTGGTGATGGCATCGAGGGGACTTGAAGCAAAAGACCTAGGATTCTTTTACTAGTTGTTAGCAAGTTCAGGCTCCGTTTTGGTCTTGAGTTGAAAAACTTGTTTCAAAGAACAAATAACCGAGGAGAAAAACGGAAACGGAACTCTTATTTTCACTATATATGAAAACAAGTTGAATCCGAGATTTGAAGTTAAAATTTGGAAGCTGTGTTTGGTTTTGAATTTTTAAGTATTAAGGTTATCGTGCTTTTTGCCTTGTTGGCGATTTGGTTTCAATGGAGGGAAATGATGCACTAAATTTATGCCAAAGAAAAGCATA CTGTTCATCTCTTCCCTTCAGCGGGTTTAAATTCCACCGCCGTGGGGTAATTCCGACCGCCGTCTGATAAATAACCTAGCCGAATAAATTTCCTTTAAAGGTTCTTGTATTCTTCTTTTGTTTGATTGAGGCGATAAACTTGAGAAATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGAAAACGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGCTCAAACCTTATGTATCTCAATGCCCCATAGAACTTAAGACCAGTGACAACAATGAATCAGCTAAATCATAAGCAAAGAGGTTTGTACTGACCCATCAACATATATTGCAGCATACGCGAATGATGTTGGTGATGGCATCGAGGGGACTTGAAGCAAAAGACCTAGGATTCTTTTACTAGTTGTTAGCAAGTTCAGGCTCCGTTTTGGTCTTGAGTTGAAAAACTTGTTTCAAAGAACAAATAACCGAGGAGAAAAACGGAAACGGAACTCTTATTTTCACTATATATGAAAACAAGTTGAATCCGAGATTTGAAGTTAAAATTTGGAAGCTGTGTTTGGTTTTGAATTTTTAAGTATTAAGGTTATCGTGCTTTTTGCCTTGTTGGCGATTTGGTTTCAATGGAGGGAAATGATGCACTAAATTTATGCCAAAGAAAAGCATA ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGAAAACGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGCTCAAACCTTATGTATCTCAATGCCCCATAGAACTTAAGACCAGTGACAACAATGAATCAGCTAAATCATAA MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS*
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41A_XENLA (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis GN=mrpl41-a PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 3.4e-08 Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 1
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41B_XENLA (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis GN=mrpl41-b PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 5.8e-08 Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 1
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41_MOUSE (39S ribosomal protein L41, mitochondrial OS=Mus musculus GN=Mrpl41 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41_RAT (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus GN=Mrpl41 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41_HUMAN (39S ribosomal protein L41, mitochondrial OS=Homo sapiens GN=MRPL41 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06 Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 1
BLAST of Cucsa.105190 vs. TrEMBL
Match: A0A0A0KBX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433300 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 3.7e-46 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of Cucsa.105190 vs. TrEMBL
Match: B9HAL7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07000g PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 9.9e-39 Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 1
BLAST of Cucsa.105190 vs. TrEMBL
Match: A5AXC0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06410 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 1.7e-38 Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1
BLAST of Cucsa.105190 vs. TrEMBL
Match: A0A0J8CA70_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132170 PE=4 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 6.4e-38 Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1
BLAST of Cucsa.105190 vs. TrEMBL
Match: A0A0B0MP49_GOSAR (39S ribosomal L41-A, mitochondrial OS=Gossypium arboreum GN=F383_07772 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 1.1e-37 Identity = 78/92 (84.78%), Postives = 84/92 (91.30%), Query Frame = 1
BLAST of Cucsa.105190 vs. TAIR10
Match: AT5G39800.1 (AT5G39800.1 Mitochondrial ribosomal protein L27) HSP 1 Score: 152.9 bits (385), Expect = 9.7e-38 Identity = 68/89 (76.40%), Postives = 82/89 (92.13%), Query Frame = 1
BLAST of Cucsa.105190 vs. TAIR10
Match: AT5G40080.1 (AT5G40080.1 Mitochondrial ribosomal protein L27) HSP 1 Score: 151.8 bits (382), Expect = 2.2e-37 Identity = 67/89 (75.28%), Postives = 81/89 (91.01%), Query Frame = 1
BLAST of Cucsa.105190 vs. TAIR10
Match: AT4G09012.1 (AT4G09012.1 Mitochondrial ribosomal protein L27) HSP 1 Score: 143.3 bits (360), Expect = 7.7e-35 Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 1
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|449436114|ref|XP_004135839.1| (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis sativus]) HSP 1 Score: 191.8 bits (486), Expect = 5.4e-46 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|659122314|ref|XP_008461075.1| (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo]) HSP 1 Score: 187.6 bits (475), Expect = 1.0e-44 Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 1
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|1009146224|ref|XP_015890766.1| (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Ziziphus jujuba]) HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39 Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 1
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|224090469|ref|XP_002308991.1| (hypothetical protein POPTR_0006s07000g [Populus trichocarpa]) HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38 Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 1
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|225459215|ref|XP_002285745.1| (PREDICTED: 39S ribosomal protein L41-A, mitochondrial [Vitis vinifera]) HSP 1 Score: 166.4 bits (420), Expect = 2.4e-38 Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |