Cucsa.088710 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTTTAGGACGTTTCCGATGGCAACAAGTAGTCGAGAATTCACTGTCGACGACAACGACGACGACGACGTAAATGCCGTTCCCGTCCTTCCTCTTTCTTGTTAACTTACCTCATATGTCTGAGTCCTTTGACCTTTCTCTCCCATCCCATTTTCAGGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCAGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCGCTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGAACTTCTCGCCAGTCTACACTTCACAGATTTATCGTGAATGCCAAGTTTCGAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCTAAGACCTGGATATATCCAGGTCGTATTTGAATTCCGGACTAATTTTGATTTCCATTGTTTTGGGATTGTTATCTACGGACTCAATTTCTTCTATTCTCACCATGATCTTCTGTGAAACGTACTCCTCACTTACCCCAAGTAACTAGAACATGTAAAATACAAAAGATAACCTAAATTTGTCAACTGACTGTTTAGATCAACTACAAGCTTCTTCAGGCGGCATATGTTTTACTGCAAGAGTTGTGCTCCTATTTTGGAATGCAACGAATCTAATTTACTTCCTCAAACCATATAGTTTTTGGTAGCCTTTCTTTTGTTTCAACTCTAAGTTTGTTTAACATGCCAATATATTCCTTGGAATTTCTAGAGTTCACTGTTTGATATGTAGGTTATAAATTTCATGAAGTCAGAAGATAAGGAGATTTGTTTCGTATTATGATACAATATTTTGCATCATTGACTGCTTGATGGATTATTCCTATTCTTAGAAGTTAGGTGTTTATAGAAATTATAATCTGATGTGATGTCAGTTAAATCATGTAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACATTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGG ATGGCGTTTAGGACGTTTCCGATGGCAACAAGTAGTCGAGAATTCACTGTcgacgacaacgacgacgacgacGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCAGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCGCTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGAACTTCTCGCCAGTCTACACTTCACAGATTTATCGTGAATGCCAAGTTTCGAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCTAAGACCTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACATTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGG ATGGCGTTTAGGACGTTTCCGATGGCAACAAGTAGTCGAGAATTCACTGTCGACGACAACGACGACGACGACGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCAGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCGCTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGAACTTCTCGCCAGTCTACACTTCACAGATTTATCGTGAATGCCAAGTTTCGAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCTAAGACCTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACATTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGG MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEX
BLAST of Cucsa.088710 vs. Swiss-Prot
Match: MPH1_SCHPO (ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fml1 PE=1 SV=2) HSP 1 Score: 92.8 bits (229), Expect = 4.1e-18 Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1
BLAST of Cucsa.088710 vs. Swiss-Prot
Match: FANCM_MOUSE (Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3) HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1
BLAST of Cucsa.088710 vs. Swiss-Prot
Match: FANCM_HUMAN (Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2) HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17 Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
BLAST of Cucsa.088710 vs. Swiss-Prot
Match: MPH1_MAGO7 (ATP-dependent DNA helicase MPH1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MPH1 PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 3.5e-17 Identity = 63/177 (35.59%), Postives = 88/177 (49.72%), Query Frame = 1
BLAST of Cucsa.088710 vs. Swiss-Prot
Match: MPH1_NEUCR (ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mph1 PE=3 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 3.8e-16 Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
BLAST of Cucsa.088710 vs. TrEMBL
Match: A0A0A0LPX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G395690 PE=4 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 1.5e-96 Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 1
BLAST of Cucsa.088710 vs. TrEMBL
Match: B9SLE2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0685890 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.2e-39 Identity = 96/179 (53.63%), Postives = 118/179 (65.92%), Query Frame = 1
BLAST of Cucsa.088710 vs. TrEMBL
Match: A0A061FRW8_THECC (DEAD/DEAH box RNA helicase family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_036398 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 2.5e-38 Identity = 101/177 (57.06%), Postives = 118/177 (66.67%), Query Frame = 1
BLAST of Cucsa.088710 vs. TrEMBL
Match: M4F023_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 6.1e-37 Identity = 91/170 (53.53%), Postives = 107/170 (62.94%), Query Frame = 1
BLAST of Cucsa.088710 vs. TrEMBL
Match: A0A078K3I2_BRANA (BnaAnng41230D protein (Fragment) OS=Brassica napus GN=BnaAnng41230D PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 8.0e-37 Identity = 91/170 (53.53%), Postives = 105/170 (61.76%), Query Frame = 1
BLAST of Cucsa.088710 vs. TAIR10
Match: AT1G35530.2 (AT1G35530.2 DEAD/DEAH box RNA helicase family protein ) HSP 1 Score: 155.6 bits (392), Expect = 2.9e-38 Identity = 91/166 (54.82%), Postives = 112/166 (67.47%), Query Frame = 1
BLAST of Cucsa.088710 vs. TAIR10
Match: AT1G36020.1 (AT1G36020.1 BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1)) HSP 1 Score: 58.9 bits (141), Expect = 3.7e-09 Identity = 41/115 (35.65%), Postives = 58/115 (50.43%), Query Frame = 1
BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|778672811|ref|XP_011649876.1| (PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis sativus]) HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96 Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 1
BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|700207935|gb|KGN63054.1| (hypothetical protein Csa_2G395690 [Cucumis sativus]) HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96 Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 1
BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|778672808|ref|XP_011649875.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus]) HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96 Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 1
BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|659081087|ref|XP_008441145.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]) HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92 Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 1
BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|659081089|ref|XP_008441146.1| (PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis melo]) HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92 Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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