Cucsa.040610 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.GGAAACTATTTTACGTCACTTTACCCTCGTGTTGTTGGCTGTGTTACAACTGCACAATGAGTTGTTGAAGAAACCACAATCAGTAACTAAAACATGCACCGATGCATGATGGAGGTGCTTCAAGGTTCGCATATTCTTCAATTTCGTTACTTATGAATCACGAAGTCCAACTATTTGACTGCACTATGTTTCAATATGCATAACTGCCTTGGAGCACTGGATGGGACGTACATCAAGGTGAATGTGCCACAAGACGATAGGCCTAGATATAGAACACGTAAGGAGGAAGTTGCCACAAACATCCTTGGTGTGTGTGACACGAAAGGTAACTTCATGTTCGTCTTGGTTGGCTGGGAAGGGTTCGTAGCTGATTCGCCCATTCTTAGAGATGCTATTGCACGACCAAACGACCTGTAGATTCCTAAGGGTAATAAAAAATTGTATGCCTCCAACAACTATTACCTACTACGTAAATCAAATTAGTTAGATCTGACGCATTCATAACAAGTTATTACTATCTATGCCATGCGGGGTATCCCAACATGAAGGAATTTTTGTCTCCCTATAGAGAACAAACATACCACTTGTAAGAGTGGCAAGGAGCGGAAAATGCACCTACCATTGCGAAAGAGCACTTCAACACGAAACATTCCTGAGCACGAAATTTTATTGAAGGGGCATTTAGTGTGTTGAAGGGTTGATGGGTAATACTTCGCGACAAGTCGTACTACCCCGTGCAAGTTCAATGTCGAACCATTCTAGCATGTTGCCTACTACACAATCTCAACAATCGCGAGATGATGAATGTCAATTTTGTTGGCGACGTGGATGAGGGAGACTCCACCTAAGCCACGACCGGATGTGACGACATTCAATTCATTGAGAACTCAAATGAATGGACGCAATAGAGGGATGATTTGGCCGTTGAGATGTTCAATCAATAGCAGTTGCGTAATCAATAGACTATGTATCAATTTAGTATTCTTGTATTTGTTTTAAGTTGGTATTAGGTGCGTCTTCTTGTATAGTTTAATGTATGCATGCATGAATAAAATGAATGTAATTGTCTCCCTTCACGCAATAGACGCTATAAATTGATTAAATTTTTTTTCCCCTTTGTATGTATTGAAGTTACTGATTTCTATGTCGTCATTTTAATTGTTAGTATGGCAAGTTCGTCACGTGCACCTAAGCATGTGTGGGTGAAGGAGGAGGAGGAAACCCTCGTGGAGTGTATGGTGGAGTTGGTGTCTGCTGGTGGATGGAAGTCTGACAATGGCACGTTCAGATCGAGCATCTGACATAACTTCTTTGAATGATGGCGGCGAAGTTGCCGAAATTCAATGTTCATGTGACTACAGTTATTGACTGTCACATAAAGGCGTCGAAGCGCTCATACCAGGCAATCACAGAAATGCGCAGCCCGTCCTGCAGCGGGTTCGGTTGGAATGACGAGGCCAAGTGCATTGCTGTTGAGAAGAAATTGTTTGACAGCTGGGTCAGGATATGCAAAAAGTATAACTGTACACTGATATAATTTTACTTCAATATGAAACAAGTCTTTTTTTTTTTACATCATGCAGAGTCATCCTGCAGCCAAGGGCCTGCTGAATAAGTCACTTTCATATCACGACAAATTGTCGTATGTCTTTGAAAAAGATAGGGCAATAGAAGCTTGTGCGAAGACCTTTGCCGACATTGGATCGAACATTCCTAGCGGGTTCGAGGAATTTGCACACGTGGTCTGA ggaaactattttacgtcactttaccctcgtgttgttggctgtgttacaactgcacaatgagttgttgaagaaaccacaatcatccaactatttgactgcactatgtttcaatatgcataactgccttggagcactggatgggacgtacatcaaggtgaatgtgccacaagacgataggcctagatatagaacacgtaaggaggaagttgccacaaacatccttggtgtgtgtgacacgaaaggtaacttcatgttcgtcttggttggctgggaagggttcgtagctgattcgcccattcttagagatgctattgcacgaccaaacgacctttattactatctatgccatgcggggtatcccaacatgaaggaatttttgtctccctatagagaacaaacataccacttcgggttcggttggaatgacgaggccaagtgcattgctgttgagaagaaattgtttgacagctggagtcatcctgcagccaagggcctgctgaataagtcactttcatatcacgacaaattgtcgtatgtctttgaaaaagatagggcaatagaagcttgtgcgaagacctttgccgacattggatcgaacattcctagcgggttcgaggaatttgcacacgtggtctga GGAAACTATTTTACGTCACTTTACCCTCGTGTTGTTGGCTGTGTTACAACTGCACAATGAGTTGTTGAAGAAACCACAATCATCCAACTATTTGACTGCACTATGTTTCAATATGCATAACTGCCTTGGAGCACTGGATGGGACGTACATCAAGGTGAATGTGCCACAAGACGATAGGCCTAGATATAGAACACGTAAGGAGGAAGTTGCCACAAACATCCTTGGTGTGTGTGACACGAAAGGTAACTTCATGTTCGTCTTGGTTGGCTGGGAAGGGTTCGTAGCTGATTCGCCCATTCTTAGAGATGCTATTGCACGACCAAACGACCTTTATTACTATCTATGCCATGCGGGGTATCCCAACATGAAGGAATTTTTGTCTCCCTATAGAGAACAAACATACCACTTCGGGTTCGGTTGGAATGACGAGGCCAAGTGCATTGCTGTTGAGAAGAAATTGTTTGACAGCTGGAGTCATCCTGCAGCCAAGGGCCTGCTGAATAAGTCACTTTCATATCACGACAAATTGTCGTATGTCTTTGAAAAAGATAGGGCAATAGAAGCTTGTGCGAAGACCTTTGCCGACATTGGATCGAACATTCCTAGCGGGTTCGAGGAATTTGCACACGTGGTCTGA ETILRHFTLVLLAVLQLHNELLKKPQSSNYLTALCFNMHNCLGALDGTYIKVNVPQDDRPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDLYYYLCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKSLSYHDKLSYVFEKDRAIEACAKTFADIGSNIPSGFEEFAHVV*
BLAST of Cucsa.040610 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.8e-43 Identity = 99/176 (56.25%), Postives = 120/176 (68.18%), Query Frame = 1
BLAST of Cucsa.040610 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19 Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
HSP 2 Score: 177.9 bits (450), Expect = 1.3e-41 Identity = 94/178 (52.81%), Postives = 120/178 (67.42%), Query Frame = 1
BLAST of Cucsa.040610 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 3.1e-16 Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
HSP 2 Score: 155.6 bits (392), Expect = 6.7e-35 Identity = 87/175 (49.71%), Postives = 108/175 (61.71%), Query Frame = 1
BLAST of Cucsa.040610 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1) HSP 1 Score: 29.6 bits (65), Expect = 5.5e+03 Identity = 18/38 (47.37%), Postives = 20/38 (52.63%), Query Frame = 1
HSP 2 Score: 142.5 bits (358), Expect = 5.9e-31 Identity = 83/175 (47.43%), Postives = 104/175 (59.43%), Query Frame = 1
BLAST of Cucsa.040610 vs. TrEMBL
Match: A0A061GDT4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 3.8e-30 Identity = 76/142 (53.52%), Postives = 92/142 (64.79%), Query Frame = 1
BLAST of Cucsa.040610 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)) HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13 Identity = 43/134 (32.09%), Postives = 66/134 (49.25%), Query Frame = 1
BLAST of Cucsa.040610 vs. TAIR10
Match: AT5G28950.1 (AT5G28950.1 unknown protein) HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11 Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|659114872|ref|XP_008457266.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo]) HSP 1 Score: 188.0 bits (476), Expect = 1.7e-44 Identity = 99/177 (55.93%), Postives = 123/177 (69.49%), Query Frame = 1
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|659118458|ref|XP_008459130.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo]) HSP 1 Score: 186.0 bits (471), Expect = 6.6e-44 Identity = 100/176 (56.82%), Postives = 120/176 (68.18%), Query Frame = 1
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo]) HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43 Identity = 98/179 (54.75%), Postives = 121/179 (67.60%), Query Frame = 1
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 184.1 bits (466), Expect = 2.5e-43 Identity = 99/176 (56.25%), Postives = 120/176 (68.18%), Query Frame = 1
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19 Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
HSP 2 Score: 177.9 bits (450), Expect = 1.8e-41 Identity = 94/178 (52.81%), Postives = 120/178 (67.42%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|